RNA–Protein interactions for RNA: ENST00000380445.7

VPS16-202, Transcript of VPS16, CORVET/HOPS core subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS16, Length 2,750 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS16-202ENST00000380445 NISCHQ9Y2I1 1504 aa27.2■■□□□ 1.95
VPS16-202ENST00000380445 CCDC180Q9P1Z9 1646 aa23.46■■□□□ 1.35
VPS16-202ENST00000380445 ZCCHC6Q5VYS8 1495 aaKnown RBP22.94■■□□□ 1.26
VPS16-202ENST00000380445 SHROOM4Q9ULL8 1493 aa22.6■■□□□ 1.21
VPS16-202ENST00000380445 DCAF1Q9Y4B6 1507 aa22.49■■□□□ 1.19
VPS16-202ENST00000380445 DCAF8L2P0C7V8 631 aa22.42■■□□□ 1.18
VPS16-202ENST00000380445 SUPT5HO00267 1087 aaKnown RBP22.04■■□□□ 1.12
VPS16-202ENST00000380445 MYO15BQ96JP2 1530 aa22.03■■□□□ 1.12
VPS16-202ENST00000380445 ABCC9O60706 1549 aa21.85■■□□□ 1.09
VPS16-202ENST00000380445 NACADO15069 1562 aa21.76■■□□□ 1.07
VPS16-202ENST00000380445 SCRIBQ14160 1630 aa21.67■■□□□ 1.06
VPS16-202ENST00000380445 RB1CC1Q8TDY2 1594 aa21.46■■□□□ 1.03
VPS16-202ENST00000380445 CHIC1Q5VXU3 224 aa21.33■■□□□ 1.01
VPS16-202ENST00000380445 RSF1Q96T23 1441 aaPredicted RBP21.31■■□□□ 1
VPS16-202ENST00000380445 CECR2Q9BXF3 1484 aa21.09■□□□□ 0.97
VPS16-202ENST00000380445 MROH2BQ7Z745 1585 aa21.03■□□□□ 0.96
VPS16-202ENST00000380445 UNC13AQ9UPW8 1703 aa20.99■□□□□ 0.95
VPS16-202ENST00000380445 BAZ1AQ9NRL2 1556 aaPredicted RBP20.98■□□□□ 0.95
VPS16-202ENST00000380445 WIZO95785 1651 aa20.89■□□□□ 0.93
VPS16-202ENST00000380445 SMARCA4P51532 1647 aa20.8■□□□□ 0.92
VPS16-202ENST00000380445 BICRAQ9NZM4 1560 aa20.76■□□□□ 0.91
VPS16-202ENST00000380445 TRIM41Q8WV44 630 aa20.69■□□□□ 0.9
VPS16-202ENST00000380445 TOP2AP11388 1531 aaKnown RBP20.68■□□□□ 0.9
VPS16-202ENST00000380445 PABPN1Q86U42 306 aaKnown RBP eCLIP20.67■□□□□ 0.96e-7■■■■□ 25.5
VPS16-202ENST00000380445 LOC105371045A0A1W2PR82 267 aa20.55■□□□□ 0.88
VPS16-202ENST00000380445 PEG3Q9GZU2 1588 aa20.51■□□□□ 0.87
VPS16-202ENST00000380445 SMARCA2P51531 1590 aa20.5■□□□□ 0.87
VPS16-202ENST00000380445 CCDC88BA6NC98 1476 aa20.5■□□□□ 0.87
VPS16-202ENST00000380445 EIF4G1Q04637 1599 aaKnown RBP20.49■□□□□ 0.87
VPS16-202ENST00000380445 ATAD2BQ9ULI0 1458 aa20.34■□□□□ 0.85
VPS16-202ENST00000380445 FAM9AQ8IZU1 332 aaPredicted RBP20.32■□□□□ 0.84
VPS16-202ENST00000380445 BAZ1BQ9UIG0 1483 aaKnown RBP20.28■□□□□ 0.84
VPS16-202ENST00000380445 ABCC8Q09428 1581 aa20.23■□□□□ 0.83
VPS16-202ENST00000380445 PCGF6Q9BYE7 350 aa20.18■□□□□ 0.82
VPS16-202ENST00000380445 NCAPD3P42695 1498 aa20.09■□□□□ 0.81
VPS16-202ENST00000380445 HMGXB3Q12766 1538 aa20.09■□□□□ 0.81
VPS16-202ENST00000380445 EEA1Q15075 1411 aa20.07■□□□□ 0.8
VPS16-202ENST00000380445 WRNQ14191 1432 aaPredicted RBP eCLIP20.07■□□□□ 0.8
VPS16-202ENST00000380445 TRIM26Q12899 539 aaPredicted RBP20.06■□□□□ 0.8
VPS16-202ENST00000380445 HRCP23327 699 aa20.02■□□□□ 0.8
VPS16-202ENST00000380445 EHMT2Q96KQ7 1210 aa20.02■□□□□ 0.8
VPS16-202ENST00000380445 SOGA1O94964 1423 aa19.97■□□□□ 0.79
VPS16-202ENST00000380445 CSRNP3Q8WYN3 585 aa19.93■□□□□ 0.78
VPS16-202ENST00000380445 SYNJ1O43426 1573 aa19.91■□□□□ 0.78
VPS16-202ENST00000380445 TNIKQ9UKE5 1360 aa19.85■□□□□ 0.77
VPS16-202ENST00000380445 RUSC2Q8N2Y8 1516 aa19.84■□□□□ 0.77
VPS16-202ENST00000380445 TOP2BQ02880 1626 aa19.81■□□□□ 0.76
VPS16-202ENST00000380445 DNAJC5BQ9UF47 199 aa19.81■□□□□ 0.76
VPS16-202ENST00000380445 GOLGA3Q08378 1498 aa19.8■□□□□ 0.76
VPS16-202ENST00000380445 CFTRP13569 1480 aa19.78■□□□□ 0.76
VPS16-202ENST00000380445 BIVM-ERCC5R4GMW8 1640 aa19.77■□□□□ 0.76
VPS16-202ENST00000380445 CEP162Q5TB80 1403 aa19.76■□□□□ 0.75
VPS16-202ENST00000380445 CC2D2AQ9P2K1 1620 aa19.76■□□□□ 0.75
VPS16-202ENST00000380445 CEP164Q9UPV0 1460 aa19.75■□□□□ 0.75
VPS16-202ENST00000380445 UBTFP17480 764 aaKnown RBP19.75■□□□□ 0.75
VPS16-202ENST00000380445 KIF21BO75037 1637 aa19.73■□□□□ 0.75
VPS16-202ENST00000380445 PRDM2Q13029 1718 aa19.67■□□□□ 0.74
VPS16-202ENST00000380445 CADPSQ9ULU8 1353 aa19.63■□□□□ 0.73
VPS16-202ENST00000380445 CUX1P39880 1505 aa19.63■□□□□ 0.73
VPS16-202ENST00000380445 ZEB1P37275 1124 aaPredicted RBP19.56■□□□□ 0.72
VPS16-202ENST00000380445 PPARGC1BQ86YN6 1023 aaKnown RBP19.54■□□□□ 0.72
VPS16-202ENST00000380445 RAPGEF2Q9Y4G8 1499 aa19.54■□□□□ 0.72
VPS16-202ENST00000380445 KIF27Q86VH2 1401 aa19.53■□□□□ 0.72
VPS16-202ENST00000380445 ERICH3Q5RHP9 1530 aa19.52■□□□□ 0.72
VPS16-202ENST00000380445 PELP1Q8IZL8 1130 aaKnown RBP19.52■□□□□ 0.72
VPS16-202ENST00000380445 CLIP1P30622 1438 aa19.51■□□□□ 0.71
VPS16-202ENST00000380445 PRXQ9BXM0 1461 aa19.49■□□□□ 0.71
VPS16-202ENST00000380445 FANCD2Q9BXW9 1451 aa19.41■□□□□ 0.7
VPS16-202ENST00000380445 VPS8Q8N3P4 1428 aa19.4■□□□□ 0.7
VPS16-202ENST00000380445 FGD5Q6ZNL6 1462 aa19.35■□□□□ 0.69
VPS16-202ENST00000380445 CUX2O14529 1486 aa19.35■□□□□ 0.69
VPS16-202ENST00000380445 APLP2Q06481 763 aa19.32■□□□□ 0.68
VPS16-202ENST00000380445 LAMC3Q9Y6N6 1575 aa19.32■□□□□ 0.68
VPS16-202ENST00000380445 DNMBPQ6XZF7 1577 aa19.31■□□□□ 0.68
VPS16-202ENST00000380445 TTBK1Q5TCY1 1321 aaPredicted RBP19.3■□□□□ 0.68
VPS16-202ENST00000380445 IGF1RP08069 1367 aa19.28■□□□□ 0.68
VPS16-202ENST00000380445 NESP48681 1621 aa19.26■□□□□ 0.67
VPS16-202ENST00000380445 RANGAP1P46060 587 aaPredicted RBP19.26■□□□□ 0.67
VPS16-202ENST00000380445 TOPBP1Q92547 1522 aa19.24■□□□□ 0.67
VPS16-202ENST00000380445 CARMIL1Q5VZK9 1371 aa19.22■□□□□ 0.67
VPS16-202ENST00000380445 ARAP1Q96P48 1450 aa19.21■□□□□ 0.67
VPS16-202ENST00000380445 CCER1Q8TC90 406 aaPredicted RBP19.2■□□□□ 0.66
VPS16-202ENST00000380445 ABCA10Q8WWZ4 1543 aa19.2■□□□□ 0.66
VPS16-202ENST00000380445 PDS5BQ9NTI5 1447 aa19.19■□□□□ 0.66
VPS16-202ENST00000380445 POLA1P09884 1462 aaPredicted RBP19.19■□□□□ 0.66
VPS16-202ENST00000380445 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP19.17■□□□□ 0.66
VPS16-202ENST00000380445 RAD54L2Q9Y4B4 1467 aa19.13■□□□□ 0.65
VPS16-202ENST00000380445 ARHGAP35Q9NRY4 1499 aa19.12■□□□□ 0.65
VPS16-202ENST00000380445 URB2Q14146 1524 aaKnown RBP19.11■□□□□ 0.65
VPS16-202ENST00000380445 CUL7Q14999 1698 aa19.07■□□□□ 0.64
VPS16-202ENST00000380445 WDR97A6NE52 1622 aa19.04■□□□□ 0.64
VPS16-202ENST00000380445 KIF21AQ7Z4S6 1674 aa19.01■□□□□ 0.63
VPS16-202ENST00000380445 HNRNPUL2Q1KMD3 747 aaKnown RBP18.98■□□□□ 0.63
VPS16-202ENST00000380445 MAP3K1Q13233 1512 aa18.97■□□□□ 0.63
VPS16-202ENST00000380445 FHAD1B1AJZ9 1412 aa18.97■□□□□ 0.63
VPS16-202ENST00000380445 MYT1Q01538 1121 aa18.97■□□□□ 0.63
VPS16-202ENST00000380445 ABCA5Q8WWZ7 1642 aa18.97■□□□□ 0.63
VPS16-202ENST00000380445 KANK4Q5T7N3 995 aaPredicted RBP18.96■□□□□ 0.63
VPS16-202ENST00000380445 GAPVD1Q14C86 1478 aa18.95■□□□□ 0.62
VPS16-202ENST00000380445 EFCAB5A4FU69 1503 aa18.93■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 102.3 ms