Protein–RNA interactions for Protein: P41235

HNF4A, Hepatocyte nuclear factor 4-alpha, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HNF4AP41235 LRCH1-201ENST00000311191 4710 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.4
HNF4AP41235 TMSB4Y-201ENST00000284856 1669 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
HNF4AP41235 DACT2-201ENST00000366795 2942 ntAPPRIS P3 TSL 2 BASIC17.58■□□□□ 0.4
HNF4AP41235 PGLYRP2-202ENST00000340880 2230 ntAPPRIS P2 TSL 1 (best) BASIC17.57■□□□□ 0.4
HNF4AP41235 C18orf21-205ENST00000592875 1581 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
HNF4AP41235 PXK-206ENST00000463280 2825 ntTSL 2 BASIC17.57■□□□□ 0.4
HNF4AP41235 ZNF487-202ENST00000437590 2111 ntTSL 2 BASIC17.57■□□□□ 0.4
HNF4AP41235 FZD10-202ENST00000539839 3282 ntBASIC17.57■□□□□ 0.4
HNF4AP41235 AC022916.1-201ENST00000590478 2658 ntTSL 2 BASIC17.57■□□□□ 0.4
HNF4AP41235 RAB29-205ENST00000446390 1441 ntTSL 2 BASIC17.57■□□□□ 0.4
HNF4AP41235 ARSI-203ENST00000515301 1429 ntTSL 4 BASIC17.57■□□□□ 0.4
HNF4AP41235 PLD3-205ENST00000409419 1966 ntAPPRIS P1 TSL 5 BASIC17.57■□□□□ 0.4
HNF4AP41235 CAB39-203ENST00000410084 1324 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
HNF4AP41235 PLCB3-204ENST00000540288 4469 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
HNF4AP41235 MYBPH-201ENST00000255416 1805 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
HNF4AP41235 GPS1-201ENST00000306823 1842 ntAPPRIS P3 TSL 1 (best) BASIC17.57■□□□□ 0.4
HNF4AP41235 MRPL52-201ENST00000311892 1042 ntTSL 3 BASIC17.57■□□□□ 0.4
HNF4AP41235 BEX3-204ENST00000372645 913 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
HNF4AP41235 MIEN1-201ENST00000394231 1006 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
HNF4AP41235 AC003075.1-204ENST00000433005 540 ntTSL 2 BASIC17.57■□□□□ 0.4
HNF4AP41235 AL136307.1-201ENST00000454882 411 ntTSL 2 BASIC17.57■□□□□ 0.4
HNF4AP41235 WDR45-218ENST00000473974 1077 ntTSL 5 BASIC17.57■□□□□ 0.4
HNF4AP41235 AC126696.3-202ENST00000570159 553 ntTSL 5 BASIC17.57■□□□□ 0.4
HNF4AP41235 UBA52-210ENST00000598780 668 ntAPPRIS P1 TSL 3 BASIC17.57■□□□□ 0.4
HNF4AP41235 AL157888.1-201ENST00000631930 593 ntBASIC17.57■□□□□ 0.4
HNF4AP41235 AL031432.5-201ENST00000641059 760 ntBASIC17.57■□□□□ 0.4
HNF4AP41235 ISOC2-201ENST00000085068 1122 ntTSL 2 BASIC17.57■□□□□ 0.4
HNF4AP41235 CAPN15-201ENST00000219611 4744 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
HNF4AP41235 FDXR-203ENST00000420580 1705 ntTSL 2 BASIC17.57■□□□□ 0.4
HNF4AP41235 ASPRV1-201ENST00000320256 2177 ntAPPRIS P1 BASIC17.57■□□□□ 0.4
HNF4AP41235 NRBP1-203ENST00000379852 2163 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
HNF4AP41235 TMEM59L-201ENST00000262817 1613 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
HNF4AP41235 WRB-201ENST00000333781 1616 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
HNF4AP41235 AC020661.1-201ENST00000503052 1584 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
HNF4AP41235 SDC2-202ENST00000518385 1583 ntTSL 5 BASIC17.57■□□□□ 0.4
HNF4AP41235 SNAPC3-207ENST00000610884 2453 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
HNF4AP41235 FCMR-201ENST00000367091 1950 ntAPPRIS P3 TSL 1 (best) BASIC17.57■□□□□ 0.4
HNF4AP41235 MAP3K7CL-206ENST00000399928 1904 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
HNF4AP41235 SKOR1-203ENST00000554054 3620 ntAPPRIS ALT2 TSL 5 BASIC17.57■□□□□ 0.4
HNF4AP41235 NOMO3-201ENST00000263012 3911 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
HNF4AP41235 COPS7A-210ENST00000539735 1832 ntAPPRIS P1 TSL 5 BASIC17.56■□□□□ 0.4
HNF4AP41235 REEP4-201ENST00000306306 1710 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
HNF4AP41235 MEST-201ENST00000223215 2465 ntAPPRIS P4 TSL 1 (best) BASIC17.56■□□□□ 0.4
HNF4AP41235 AC008764.6-201ENST00000595909 2069 ntBASIC17.56■□□□□ 0.4
HNF4AP41235 FMR1-205ENST00000370475 4308 ntAPPRIS P3 TSL 1 (best) BASIC17.56■□□□□ 0.4
HNF4AP41235 MLLT10-205ENST00000377100 1136 ntTSL 2 BASIC17.56■□□□□ 0.4
HNF4AP41235 TMA7-201ENST00000438607 561 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
HNF4AP41235 CDKN2AIPNL-202ENST00000458198 1223 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
HNF4AP41235 AC019068.1-202ENST00000483218 768 ntTSL 3 BASIC17.56■□□□□ 0.4
HNF4AP41235 C16orf74-206ENST00000602766 832 ntAPPRIS ALT2 TSL 3 BASIC17.56■□□□□ 0.4
HNF4AP41235 C16orf74-207ENST00000602914 761 ntAPPRIS ALT2 TSL 2 BASIC17.56■□□□□ 0.4
HNF4AP41235 BDKRB1-204ENST00000611804 1085 ntAPPRIS P1 BASIC17.56■□□□□ 0.4
HNF4AP41235 PPP1R9B-202ENST00000612501 4167 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
HNF4AP41235 JMJD6-202ENST00000397625 1603 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
HNF4AP41235 PCDHA5-202ENST00000529859 5218 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
HNF4AP41235 NPFFR2-201ENST00000308744 1922 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
HNF4AP41235 PCDH7-201ENST00000361762 6403 ntAPPRIS P3 TSL 1 (best) BASIC17.56■□□□□ 0.4
HNF4AP41235 GATA2-203ENST00000487848 1878 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
HNF4AP41235 TFCP2-204ENST00000548115 1862 ntTSL 5 BASIC17.56■□□□□ 0.4
HNF4AP41235 FAM3A-204ENST00000369643 1521 ntAPPRIS P1 TSL 2 BASIC17.56■□□□□ 0.4
HNF4AP41235 PHRF1-205ENST00000533464 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
HNF4AP41235 HGFAC-201ENST00000382774 2159 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
HNF4AP41235 AGFG1-201ENST00000310078 8668 ntAPPRIS P3 TSL 1 (best) BASIC17.56■□□□□ 0.4
HNF4AP41235 PARD3-205ENST00000374773 3420 ntTSL 5 BASIC17.56■□□□□ 0.4
HNF4AP41235 DLC1-203ENST00000358919 4392 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
HNF4AP41235 ATRIP-203ENST00000357105 2403 ntTSL 2 BASIC17.56■□□□□ 0.4
HNF4AP41235 EDA-203ENST00000374552 5278 ntAPPRIS P3 TSL 1 (best) BASIC17.56■□□□□ 0.4
HNF4AP41235 BAZ1A-203ENST00000382422 5775 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
HNF4AP41235 ZDHHC20-201ENST00000320220 1351 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
HNF4AP41235 ZNF133-211ENST00000538547 2245 ntTSL 2 BASIC17.55■□□□□ 0.4
HNF4AP41235 CD14-201ENST00000302014 1886 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
HNF4AP41235 FIBCD1-201ENST00000372337 1868 ntTSL 5 BASIC17.55■□□□□ 0.4
HNF4AP41235 TEFM-205ENST00000581216 1891 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
HNF4AP41235 CASKIN2-201ENST00000321617 5015 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
HNF4AP41235 HRAS-201ENST00000311189 894 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
HNF4AP41235 RNF152P1-201ENST00000397754 604 ntBASIC17.55■□□□□ 0.4
HNF4AP41235 IMP3-202ENST00000403490 1237 ntAPPRIS P1 BASIC17.55■□□□□ 0.4
HNF4AP41235 TSPY5P-201ENST00000426936 936 ntBASIC17.55■□□□□ 0.4
HNF4AP41235 PVRIG2P-201ENST00000435460 978 ntBASIC17.55■□□□□ 0.4
HNF4AP41235 AC012618.3-202ENST00000440004 472 ntTSL 4 BASIC17.55■□□□□ 0.4
HNF4AP41235 AC034232.1-201ENST00000506026 1064 ntBASIC17.55■□□□□ 0.4
HNF4AP41235 ULK4P3-205ENST00000568486 1158 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
HNF4AP41235 MNT-208ENST00000575394 606 ntTSL 4 BASIC17.55■□□□□ 0.4
HNF4AP41235 AC004076.1-201ENST00000596831 664 ntAPPRIS P1 TSL 2 BASIC17.55■□□□□ 0.4
HNF4AP41235 C16orf74-203ENST00000602675 744 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
HNF4AP41235 IL17RC-201ENST00000295981 2621 ntAPPRIS P4 TSL 2 BASIC17.55■□□□□ 0.4
HNF4AP41235 LINC00574-201ENST00000420557 2318 ntTSL 2 BASIC17.55■□□□□ 0.4
HNF4AP41235 LPAR2-201ENST00000407877 1791 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
HNF4AP41235 PCDHA13-201ENST00000289272 5260 ntAPPRIS P2 TSL 1 (best) BASIC17.55■□□□□ 0.4
HNF4AP41235 SLC23A3-203ENST00000409878 2010 ntAPPRIS P1 TSL 2 BASIC17.55■□□□□ 0.4
HNF4AP41235 RAI1-201ENST00000353383 7662 ntAPPRIS P2 TSL 1 (best) BASIC17.55■□□□□ 0.4
HNF4AP41235 MCRS1-202ENST00000357123 1428 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
HNF4AP41235 TNFAIP1-202ENST00000544907 1656 ntTSL 2 BASIC17.55■□□□□ 0.4
HNF4AP41235 RHOBTB1-201ENST00000337910 4473 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
HNF4AP41235 FAM213B-202ENST00000378425 2665 ntAPPRIS ALT2 TSL 2 BASIC17.55■□□□□ 0.4
HNF4AP41235 CRMP1-202ENST00000397890 2911 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
HNF4AP41235 STXBP2-202ENST00000414284 1859 ntAPPRIS ALT1 TSL 1 (best) BASIC17.54■□□□□ 0.4
HNF4AP41235 AL360181.3-201ENST00000468317 1605 ntAPPRIS P1 TSL 5 BASIC17.54■□□□□ 0.4
HNF4AP41235 PCDHB18P-201ENST00000524813 2368 ntBASIC17.54■□□□□ 0.4
HNF4AP41235 RNF169-201ENST00000299563 7823 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 52 ms