Protein–RNA interactions for Protein: Q9NY93

DDX56, Probable ATP-dependent RNA helicase DDX56, humanhuman

Known RBP Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX56Q9NY93 ZFAND2B-221ENST00000621130 1070 ntTSL 5 BASIC25.75■■□□□ 1.71
DDX56Q9NY93 ANKS3-203ENST00000450067 2272 ntTSL 5 BASIC25.75■■□□□ 1.71
DDX56Q9NY93 ATP8B2-201ENST00000368487 1523 ntTSL 1 (best) BASIC25.74■■□□□ 1.71
DDX56Q9NY93 CFAP99-207ENST00000635017 2298 ntTSL 5 BASIC25.74■■□□□ 1.71
DDX56Q9NY93 LAGE3-201ENST00000357360 949 ntAPPRIS P1 TSL 1 (best) BASIC25.74■■□□□ 1.71
DDX56Q9NY93 RANBP1-202ENST00000402752 1132 ntAPPRIS ALT1 TSL 1 (best) BASIC25.74■■□□□ 1.71
DDX56Q9NY93 ECHDC3-201ENST00000379215 1649 ntAPPRIS P1 TSL 1 (best) BASIC25.74■■□□□ 1.71
DDX56Q9NY93 CTF1-202ENST00000395019 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC25.74■■□□□ 1.71
DDX56Q9NY93 KAZN-207ENST00000503743 1475 ntTSL 1 (best) BASIC25.73■■□□□ 1.71
DDX56Q9NY93 TXNRD2-205ENST00000400525 1874 ntTSL 5 BASIC25.73■■□□□ 1.71
DDX56Q9NY93 PDK1-202ENST00000392571 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC25.73■■□□□ 1.71
DDX56Q9NY93 MRPL4-201ENST00000253099 1455 ntAPPRIS P2 TSL 1 (best) BASIC25.72■■□□□ 1.71
DDX56Q9NY93 STOML1-202ENST00000316911 1891 ntTSL 1 (best) BASIC25.72■■□□□ 1.71
DDX56Q9NY93 BAMBI-201ENST00000375533 1877 ntAPPRIS P1 TSL 1 (best) BASIC25.72■■□□□ 1.71
DDX56Q9NY93 CIB2-202ENST00000539011 1511 ntTSL 1 (best) BASIC25.72■■□□□ 1.71
DDX56Q9NY93 SLC25A23-203ENST00000334510 1424 ntTSL 1 (best) BASIC25.71■■□□□ 1.71
DDX56Q9NY93 POU2F2-208ENST00000529952 1716 ntAPPRIS ALT2 TSL 1 (best) BASIC25.71■■□□□ 1.71
DDX56Q9NY93 AC145676.1-201ENST00000514988 2004 ntBASIC25.71■■□□□ 1.71
DDX56Q9NY93 C9orf50-201ENST00000372478 1620 ntAPPRIS P2 TSL 2 BASIC25.71■■□□□ 1.71
DDX56Q9NY93 FKBP1A-204ENST00000400137 1622 ntAPPRIS P1 TSL 1 (best) BASIC25.71■■□□□ 1.71
DDX56Q9NY93 DLX2-202ENST00000466293 1852 ntTSL 2 BASIC25.71■■□□□ 1.71
DDX56Q9NY93 GATA2-AS1-202ENST00000468377 1578 ntTSL 2 BASIC25.71■■□□□ 1.71
DDX56Q9NY93 ALG2-203ENST00000476832 1880 ntAPPRIS P1 TSL 1 (best) BASIC25.7■■□□□ 1.71
DDX56Q9NY93 PLBD2-202ENST00000545182 2321 ntTSL 2 BASIC25.7■■□□□ 1.71
DDX56Q9NY93 DHRS13-203ENST00000426464 1569 ntTSL 2 BASIC25.7■■□□□ 1.71
DDX56Q9NY93 LACTBL1-202ENST00000618559 1500 ntAPPRIS ALT2 TSL 5 BASIC25.7■■□□□ 1.7
DDX56Q9NY93 AURKAIP1-203ENST00000338370 1072 ntAPPRIS P1 TSL 1 (best) BASIC25.7■■□□□ 1.7
DDX56Q9NY93 SURF1-201ENST00000371974 1093 ntAPPRIS P1 TSL 1 (best) BASIC25.7■■□□□ 1.7
DDX56Q9NY93 HES6-205ENST00000409356 528 ntTSL 2 BASIC25.7■■□□□ 1.7
DDX56Q9NY93 SURF1-205ENST00000615505 991 ntTSL 1 (best) BASIC25.7■■□□□ 1.7
DDX56Q9NY93 AC148477.6-201ENST00000623746 465 ntBASIC25.7■■□□□ 1.7
DDX56Q9NY93 KIAA2013-201ENST00000376572 2815 ntAPPRIS P1 TSL 1 (best) BASIC25.7■■□□□ 1.7
DDX56Q9NY93 TAZ-205ENST00000475699 1862 ntTSL 1 (best) BASIC25.7■■□□□ 1.7
DDX56Q9NY93 RP9-201ENST00000297157 1121 ntAPPRIS P2 TSL 1 (best) BASIC25.69■■□□□ 1.7
DDX56Q9NY93 P2RY2-202ENST00000393596 2174 ntAPPRIS P1 TSL 1 (best) BASIC25.69■■□□□ 1.7
DDX56Q9NY93 GNPTAB-201ENST00000299314 5701 ntAPPRIS P1 TSL 1 (best) BASIC25.69■■□□□ 1.7
DDX56Q9NY93 DEDD-212ENST00000545495 2329 ntAPPRIS P1 TSL 3 BASIC25.69■■□□□ 1.7
DDX56Q9NY93 PPM1B-202ENST00000345249 1713 ntTSL 1 (best) BASIC25.68■■□□□ 1.7
DDX56Q9NY93 MIR219A2-201ENST00000608502 1504 ntBASIC25.68■■□□□ 1.7
DDX56Q9NY93 DPY19L1-209ENST00000638088 5075 ntAPPRIS ALT2 TSL 5 BASIC25.68■■□□□ 1.7
DDX56Q9NY93 TTC3-225ENST00000540756 2025 ntTSL 2 BASIC25.68■■□□□ 1.7
DDX56Q9NY93 EBF4-210ENST00000609451 2012 ntAPPRIS ALT1 TSL 5 BASIC25.68■■□□□ 1.7
DDX56Q9NY93 CTXN1-201ENST00000318978 1274 ntAPPRIS P1 TSL 1 (best) BASIC25.68■■□□□ 1.7
DDX56Q9NY93 AGPS-202ENST00000409888 815 ntTSL 4 BASIC25.68■■□□□ 1.7
DDX56Q9NY93 GNPTG-204ENST00000527137 386 ntTSL 2 BASIC25.68■■□□□ 1.7
DDX56Q9NY93 C12orf75-201ENST00000443585 1366 ntAPPRIS P1 TSL 2 BASIC25.68■■□□□ 1.7
DDX56Q9NY93 TP53I3-201ENST00000238721 1998 ntAPPRIS P1 TSL 1 (best) BASIC25.67■■□□□ 1.7
DDX56Q9NY93 EMC10-206ENST00000598585 1610 ntAPPRIS ALT2 TSL 5 BASIC25.67■■□□□ 1.7
DDX56Q9NY93 ING2-201ENST00000302327 1189 ntAPPRIS P1 TSL 1 (best) BASIC25.67■■□□□ 1.7
DDX56Q9NY93 CRELD2-203ENST00000404488 1577 ntAPPRIS ALT2 TSL 1 (best) BASIC25.67■■□□□ 1.7
DDX56Q9NY93 BCL7C-202ENST00000380317 2409 ntTSL 1 (best) BASIC25.67■■□□□ 1.7
DDX56Q9NY93 ADAMTSL5-202ENST00000395467 1533 ntTSL 5 BASIC25.67■■□□□ 1.7
DDX56Q9NY93 R3HCC1-201ENST00000265806 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC25.67■■□□□ 1.7
DDX56Q9NY93 AC092803.2-201ENST00000564287 1899 ntBASIC25.66■■□□□ 1.7
DDX56Q9NY93 KDM4C-203ENST00000401787 1406 ntTSL 1 (best) BASIC25.66■■□□□ 1.7
DDX56Q9NY93 ST7L-206ENST00000369666 1815 ntTSL 1 (best) BASIC25.66■■□□□ 1.7
DDX56Q9NY93 GADD45G-201ENST00000252506 1065 ntAPPRIS P1 TSL 1 (best) BASIC25.66■■□□□ 1.7
DDX56Q9NY93 HS3ST6-201ENST00000454677 1273 ntAPPRIS P1 TSL 1 (best) BASIC25.66■■□□□ 1.7
DDX56Q9NY93 TRIM52-AS1-203ENST00000509252 529 ntTSL 3 BASIC25.66■■□□□ 1.7
DDX56Q9NY93 LSM6-202ENST00000502781 1352 ntAPPRIS P1 TSL 1 (best) BASIC25.66■■□□□ 1.7
DDX56Q9NY93 POLR3H-201ENST00000337566 1330 ntTSL 1 (best) BASIC25.65■■□□□ 1.7
DDX56Q9NY93 NRG2-203ENST00000340391 1944 ntTSL 5 BASIC25.65■■□□□ 1.7
DDX56Q9NY93 RNF166-209ENST00000567844 633 ntTSL 5 BASIC25.65■■□□□ 1.7
DDX56Q9NY93 LINC01896-206ENST00000575722 1256 ntTSL 2 BASIC25.65■■□□□ 1.7
DDX56Q9NY93 ACSS1-202ENST00000376726 2244 ntTSL 2 BASIC25.65■■□□□ 1.7
DDX56Q9NY93 CLEC3B-202ENST00000428034 752 ntTSL 2 BASIC25.64■■□□□ 1.7
DDX56Q9NY93 CHST11-203ENST00000547956 936 ntTSL 2 BASIC25.64■■□□□ 1.7
DDX56Q9NY93 AC092902.2-221ENST00000628476 965 ntTSL 5 BASIC25.64■■□□□ 1.7
DDX56Q9NY93 TSGA13-204ENST00000456951 2046 ntAPPRIS P2 TSL 2 BASIC25.64■■□□□ 1.69
DDX56Q9NY93 CAPN10-204ENST00000354082 1999 ntTSL 1 (best) BASIC25.64■■□□□ 1.69
DDX56Q9NY93 OTUD5-202ENST00000376488 2692 ntAPPRIS ALT1 TSL 1 (best) BASIC25.63■■□□□ 1.69
DDX56Q9NY93 LDLRAD3-203ENST00000528989 1879 ntTSL 1 (best) BASIC25.63■■□□□ 1.69
DDX56Q9NY93 GPR150-201ENST00000380007 2065 ntAPPRIS P1 BASIC25.62■■□□□ 1.69
DDX56Q9NY93 U2AF1-204ENST00000459639 1675 ntTSL 1 (best) BASIC25.62■■□□□ 1.69
DDX56Q9NY93 U2AF1L5-204ENST00000623375 1675 ntTSL 1 (best) BASIC25.62■■□□□ 1.69
DDX56Q9NY93 SPOCK3-221ENST00000512648 1456 ntTSL 1 (best) BASIC25.62■■□□□ 1.69
DDX56Q9NY93 ABHD17AP4-201ENST00000411545 909 ntBASIC25.62■■□□□ 1.69
DDX56Q9NY93 STARD10-220ENST00000545082 1085 ntTSL 3 BASIC25.62■■□□□ 1.69
DDX56Q9NY93 P2RX2-203ENST00000350048 1344 ntTSL 1 (best) BASIC25.62■■□□□ 1.69
DDX56Q9NY93 DUSP8P4-201ENST00000399538 1761 ntBASIC25.61■■□□□ 1.69
DDX56Q9NY93 CABP1-202ENST00000316803 1658 ntTSL 1 (best) BASIC25.61■■□□□ 1.69
DDX56Q9NY93 HLA-V-202ENST00000446817 847 ntBASIC25.61■■□□□ 1.69
DDX56Q9NY93 NRM-201ENST00000259953 1755 ntAPPRIS P2 TSL 2 BASIC25.61■■□□□ 1.69
DDX56Q9NY93 CDC34-201ENST00000215574 1471 ntAPPRIS P1 TSL 1 (best) BASIC25.6■■□□□ 1.69
DDX56Q9NY93 UBE2J2-202ENST00000349431 1733 ntAPPRIS P1 TSL 1 (best) BASIC25.6■■□□□ 1.69
DDX56Q9NY93 CAMK1D-203ENST00000615792 1725 ntTSL 5 BASIC25.6■■□□□ 1.69
DDX56Q9NY93 GTF2E2-201ENST00000355904 1762 ntAPPRIS P1 TSL 1 (best) BASIC25.6■■□□□ 1.69
DDX56Q9NY93 PPP1R3F-205ENST00000495799 1537 ntTSL 1 (best) BASIC25.6■■□□□ 1.69
DDX56Q9NY93 PTPA-202ENST00000347048 1989 ntTSL 1 (best) BASIC25.6■■□□□ 1.69
DDX56Q9NY93 BICDL2-203ENST00000572449 1984 ntAPPRIS P1 TSL 5 BASIC25.6■■□□□ 1.69
DDX56Q9NY93 CASP9-202ENST00000348549 1621 ntTSL 1 (best) BASIC25.59■■□□□ 1.69
DDX56Q9NY93 TSPAN10-203ENST00000574882 1837 ntAPPRIS P2 TSL 1 (best) BASIC25.59■■□□□ 1.69
DDX56Q9NY93 RINL-208ENST00000598904 1846 ntAPPRIS P3 TSL 5 BASIC25.59■■□□□ 1.69
DDX56Q9NY93 VSTM2L-202ENST00000373461 1959 ntAPPRIS P1 TSL 1 (best) BASIC25.59■■□□□ 1.69
DDX56Q9NY93 U2AF2-206ENST00000590551 1104 ntTSL 3 BASIC25.59■■□□□ 1.69
DDX56Q9NY93 ARMC10-205ENST00000428183 2445 ntTSL 1 (best) BASIC25.59■■□□□ 1.69
DDX56Q9NY93 SERF1A-202ENST00000354833 1889 ntTSL 1 (best) BASIC25.59■■□□□ 1.69
DDX56Q9NY93 SERF1B-201ENST00000380750 1889 ntTSL 1 (best) BASIC25.59■■□□□ 1.69
DDX56Q9NY93 SRP68-202ENST00000539137 2386 ntTSL 2 BASIC25.59■■□□□ 1.69
DDX56Q9NY93 AQP1-203ENST00000409899 1009 ntTSL 1 (best) BASIC25.58■■□□□ 1.69
Retrieved 100 of 98,524 protein–RNA pairs in 102 ms