Protein–RNA interactions for Protein: Q9NY93

DDX56, Probable ATP-dependent RNA helicase DDX56, humanhuman

Known RBP Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX56Q9NY93 TCF15-201ENST00000246080 1555 ntAPPRIS P1 TSL 1 (best) BASIC35.2■■■■□ 3.23
DDX56Q9NY93 FBLL1-201ENST00000338333 1519 ntAPPRIS P1 BASIC35.11■■■■□ 3.21
DDX56Q9NY93 AL356512.1-201ENST00000607453 1739 ntBASIC34.53■■■■□ 3.12
DDX56Q9NY93 HES6-203ENST00000409160 1600 ntTSL 2 BASIC34.4■■■■□ 3.1
DDX56Q9NY93 CSNK1E-204ENST00000403904 1580 ntAPPRIS P1 TSL 5 BASIC34.36■■■■□ 3.09
DDX56Q9NY93 SEPT3-204ENST00000406029 1866 ntTSL 5 BASIC34.35■■■■□ 3.09
DDX56Q9NY93 PRR5-217ENST00000617066 1726 ntTSL 5 BASIC34.04■■■■□ 3.04
DDX56Q9NY93 AES-202ENST00000327141 1608 ntAPPRIS P1 TSL 1 (best) BASIC34.02■■■■□ 3.04
DDX56Q9NY93 PPP1CA-203ENST00000376745 1476 ntAPPRIS P1 TSL 1 (best) BASIC33.85■■■■□ 3.01
DDX56Q9NY93 PRR5-216ENST00000611394 1843 ntTSL 2 BASIC33.7■■■□□ 2.99
DDX56Q9NY93 PHF10-201ENST00000339209 1719 ntAPPRIS P4 TSL 1 (best) BASIC33.54■■■□□ 2.96
DDX56Q9NY93 AC116565.1-201ENST00000610212 2421 ntAPPRIS P1 BASIC33.49■■■□□ 2.95
DDX56Q9NY93 SSSCA1-205ENST00000527920 806 ntTSL 3 BASIC33.16■■■□□ 2.9
DDX56Q9NY93 PTF1A-201ENST00000376504 1537 ntAPPRIS P1 TSL 1 (best) BASIC33.1■■■□□ 2.89
DDX56Q9NY93 ZFYVE21-201ENST00000216602 1521 ntAPPRIS ALT2 TSL 2 BASIC32.9■■■□□ 2.86
DDX56Q9NY93 CYHR1-209ENST00000530374 1870 ntTSL 3 BASIC32.87■■■□□ 2.85
DDX56Q9NY93 FAM149A-205ENST00000502970 1990 ntAPPRIS P2 TSL 5 BASIC32.86■■■□□ 2.85
DDX56Q9NY93 RAB12-201ENST00000329286 2137 ntAPPRIS P1 TSL 1 (best) BASIC32.81■■■□□ 2.84
DDX56Q9NY93 NECTIN3-201ENST00000319792 1549 ntAPPRIS ALT2 TSL 1 (best) BASIC32.79■■■□□ 2.84
DDX56Q9NY93 FBRSL1-201ENST00000434748 5568 ntAPPRIS P2 TSL 1 (best) BASIC32.61■■■□□ 2.81
DDX56Q9NY93 ZNF358-202ENST00000597229 1954 ntAPPRIS P1 TSL 2 BASIC32.59■■■□□ 2.81
DDX56Q9NY93 CAPNS1-206ENST00000588815 1471 ntAPPRIS P2 TSL 1 (best) BASIC32.48■■■□□ 2.79
DDX56Q9NY93 PPP2CB-201ENST00000221138 2006 ntAPPRIS P1 TSL 1 (best) BASIC32.39■■■□□ 2.78
DDX56Q9NY93 HRAS-203ENST00000397596 1100 ntAPPRIS P1 TSL 3 BASIC32.38■■■□□ 2.77
DDX56Q9NY93 OLFM1-208ENST00000392991 1057 ntTSL 2 BASIC32.29■■■□□ 2.76
DDX56Q9NY93 GIPC1-205ENST00000586027 1386 ntAPPRIS P1 TSL 2 BASIC32.19■■■□□ 2.74
DDX56Q9NY93 MPND-201ENST00000262966 1567 ntAPPRIS P3 TSL 1 (best) BASIC32.19■■■□□ 2.74
DDX56Q9NY93 ACOT7-209ENST00000545482 1804 ntAPPRIS ALT2 TSL 1 (best) BASIC32.19■■■□□ 2.74
DDX56Q9NY93 MPND-207ENST00000599840 1611 ntAPPRIS ALT2 TSL 5 BASIC32.18■■■□□ 2.74
DDX56Q9NY93 TRIP10-202ENST00000313285 2035 ntAPPRIS P1 TSL 1 (best) BASIC32.16■■■□□ 2.74
DDX56Q9NY93 NT5DC2-203ENST00000459839 1639 ntTSL 1 (best) BASIC32.11■■■□□ 2.73
DDX56Q9NY93 FOXD1-202ENST00000615637 2272 ntAPPRIS P1 BASIC32.07■■■□□ 2.73
DDX56Q9NY93 TGIF1-202ENST00000343820 2076 ntAPPRIS P1 TSL 1 (best) BASIC32.01■■■□□ 2.71
DDX56Q9NY93 TAF5L-202ENST00000366674 492 ntTSL 3 BASIC32■■■□□ 2.71
DDX56Q9NY93 SLC25A28-201ENST00000370495 1451 ntAPPRIS P1 TSL 1 (best) BASIC31.97■■■□□ 2.71
DDX56Q9NY93 ANKRD60-201ENST00000457363 1038 ntAPPRIS P1 TSL 5 BASIC31.96■■■□□ 2.71
DDX56Q9NY93 FAM149A-215ENST00000514153 2070 ntAPPRIS P2 TSL 5 BASIC31.93■■■□□ 2.7
DDX56Q9NY93 CCM2-219ENST00000544363 1620 ntTSL 3 BASIC31.86■■■□□ 2.69
DDX56Q9NY93 METRNL-201ENST00000320095 1605 ntAPPRIS P1 TSL 1 (best) BASIC31.78■■■□□ 2.68
DDX56Q9NY93 PPP2CB-204ENST00000518564 691 ntTSL 3 BASIC31.64■■■□□ 2.66
DDX56Q9NY93 C11orf63-202ENST00000307257 1964 ntTSL 2 BASIC31.64■■■□□ 2.66
DDX56Q9NY93 KHSRP-213ENST00000619396 2226 ntAPPRIS ALT2 TSL 5 BASIC31.61■■■□□ 2.65
DDX56Q9NY93 UBE2M-201ENST00000253023 1508 ntAPPRIS P1 TSL 1 (best) BASIC31.53■■■□□ 2.64
DDX56Q9NY93 CSNK1E-206ENST00000413574 1631 ntTSL 5 BASIC31.41■■■□□ 2.62
DDX56Q9NY93 PABPN1-201ENST00000216727 2001 ntAPPRIS P2 TSL 1 (best) BASIC31.35■■■□□ 2.61
DDX56Q9NY93 INO80B-WBP1-202ENST00000452361 2040 ntAPPRIS P5 TSL 2 BASIC31.34■■■□□ 2.61
DDX56Q9NY93 MAPK3-201ENST00000263025 1861 ntAPPRIS P3 TSL 1 (best) BASIC31.33■■■□□ 2.61
DDX56Q9NY93 NT5DC2-202ENST00000422318 1795 ntAPPRIS ALT2 TSL 5 BASIC31.3■■■□□ 2.6
DDX56Q9NY93 ILK-212ENST00000532063 1617 ntTSL 2 BASIC31.24■■■□□ 2.59
DDX56Q9NY93 B4GALT2-203ENST00000372324 2203 ntAPPRIS P1 TSL 1 (best) BASIC31.24■■■□□ 2.59
DDX56Q9NY93 PWWP2B-202ENST00000631148 2013 ntTSL 5 BASIC31.24■■■□□ 2.59
DDX56Q9NY93 NKAIN4-203ENST00000370316 1430 ntAPPRIS P1 TSL 1 (best) BASIC31.21■■■□□ 2.59
DDX56Q9NY93 HAPLN2-201ENST00000255039 1771 ntAPPRIS P1 TSL 1 (best) BASIC31.12■■■□□ 2.57
DDX56Q9NY93 CRIP2-201ENST00000329146 1857 ntAPPRIS P1 TSL 1 (best) BASIC31.1■■■□□ 2.57
DDX56Q9NY93 MAPK3-202ENST00000322266 1743 ntTSL 5 BASIC31.02■■■□□ 2.56
DDX56Q9NY93 C11orf68-202ENST00000449692 1559 ntAPPRIS P3 TSL 1 (best) BASIC30.99■■■□□ 2.55
DDX56Q9NY93 CMTM4-202ENST00000394106 1187 ntAPPRIS P1 TSL 1 (best) BASIC30.92■■■□□ 2.54
DDX56Q9NY93 CMTM4-204ENST00000563952 1023 ntTSL 1 (best) BASIC30.92■■■□□ 2.54
DDX56Q9NY93 LMO2-202ENST00000395833 1687 ntAPPRIS P1 TSL 1 (best) BASIC30.9■■■□□ 2.54
DDX56Q9NY93 INO80B-201ENST00000233331 1261 ntAPPRIS P1 TSL 1 (best) BASIC30.89■■■□□ 2.54
DDX56Q9NY93 GALR3-201ENST00000249041 1157 ntAPPRIS P1 TSL 1 (best) BASIC30.88■■■□□ 2.53
DDX56Q9NY93 SLC25A10-203ENST00000545862 1911 ntTSL 1 (best) BASIC30.86■■■□□ 2.53
DDX56Q9NY93 NT5M-207ENST00000616989 1635 ntTSL 1 (best) BASIC30.84■■■□□ 2.53
DDX56Q9NY93 FEZF2-203ENST00000486811 2001 ntAPPRIS P1 TSL 5 BASIC30.74■■■□□ 2.51
DDX56Q9NY93 KIAA2013-203ENST00000616327 2170 ntAPPRIS P1 TSL 5 BASIC30.73■■■□□ 2.51
DDX56Q9NY93 AL357033.3-201ENST00000620143 614 ntTSL 3 BASIC30.72■■■□□ 2.51
DDX56Q9NY93 C11orf84-201ENST00000294244 2024 ntAPPRIS P1 TSL 1 (best) BASIC30.69■■■□□ 2.5
DDX56Q9NY93 RAN-202ENST00000392369 1530 ntAPPRIS P1 TSL 1 (best) BASIC30.68■■■□□ 2.5
DDX56Q9NY93 CTDNEP1-208ENST00000573600 1724 ntAPPRIS P1 TSL 5 BASIC30.67■■■□□ 2.5
DDX56Q9NY93 INO80B-203ENST00000409917 796 ntTSL 2 BASIC30.66■■■□□ 2.5
DDX56Q9NY93 CDV3-203ENST00000431519 955 ntTSL 1 (best) BASIC30.58■■■□□ 2.49
DDX56Q9NY93 SSBP3-204ENST00000371320 2077 ntAPPRIS P3 TSL 1 (best) BASIC30.57■■■□□ 2.48
DDX56Q9NY93 AGAP1-204ENST00000409457 2165 ntTSL 1 (best) BASIC30.56■■■□□ 2.48
DDX56Q9NY93 ECHS1-201ENST00000368547 1617 ntAPPRIS P1 TSL 1 (best) BASIC30.52■■■□□ 2.48
DDX56Q9NY93 CACNG8-202ENST00000638874 1278 ntAPPRIS P2 TSL 1 (best) BASIC30.52■■■□□ 2.48
DDX56Q9NY93 GRASP-206ENST00000552049 1688 ntTSL 1 (best) BASIC30.49■■■□□ 2.47
DDX56Q9NY93 LIMCH1-211ENST00000509638 1570 ntTSL 1 (best) BASIC30.48■■■□□ 2.47
DDX56Q9NY93 CSNK1E-205ENST00000405675 2127 ntTSL 5 BASIC30.47■■■□□ 2.47
DDX56Q9NY93 FAM89B-203ENST00000530349 1263 ntAPPRIS P1 TSL 2 BASIC30.47■■■□□ 2.47
DDX56Q9NY93 AC015813.7-201ENST00000623294 581 ntBASIC30.44■■■□□ 2.46
DDX56Q9NY93 Z97634.1-201ENST00000412293 1715 ntTSL 1 (best) BASIC30.42■■■□□ 2.46
DDX56Q9NY93 TPRG1L-201ENST00000344579 2189 ntTSL 1 (best) BASIC30.41■■■□□ 2.46
DDX56Q9NY93 AC145285.7-201ENST00000614819 1539 ntBASIC30.38■■■□□ 2.45
DDX56Q9NY93 AL136373.1-201ENST00000634804 1449 ntAPPRIS P1 BASIC30.36■■■□□ 2.45
DDX56Q9NY93 HAGHL-201ENST00000341413 1701 ntTSL 2 BASIC30.32■■■□□ 2.44
DDX56Q9NY93 FEZF2-201ENST00000283268 2074 ntAPPRIS P1 TSL 1 (best) BASIC30.29■■■□□ 2.44
DDX56Q9NY93 GPI-201ENST00000356487 2210 ntAPPRIS P1 TSL 1 (best) BASIC30.29■■■□□ 2.44
DDX56Q9NY93 HOXB3-208ENST00000476342 1420 ntAPPRIS P1 TSL 1 (best) BASIC30.28■■■□□ 2.44
DDX56Q9NY93 NT5M-201ENST00000389022 1617 ntAPPRIS P1 TSL 1 (best) BASIC30.21■■■□□ 2.43
DDX56Q9NY93 SULT4A1-201ENST00000330884 2468 ntAPPRIS P1 TSL 1 (best) BASIC30.16■■■□□ 2.42
DDX56Q9NY93 ADRA2C-201ENST00000330055 2129 ntAPPRIS P1 BASIC30.15■■■□□ 2.42
DDX56Q9NY93 FAM19A5-203ENST00000402357 1508 ntTSL 1 (best) BASIC30.13■■■□□ 2.41
DDX56Q9NY93 RAB43-207ENST00000476465 1627 ntTSL 3 BASIC30.11■■■□□ 2.41
DDX56Q9NY93 SFRP5-201ENST00000266066 1836 ntAPPRIS P1 TSL 1 (best) BASIC30.08■■■□□ 2.41
DDX56Q9NY93 DRD4-201ENST00000176183 1375 ntAPPRIS P1 TSL 1 (best) BASIC30.05■■■□□ 2.4
DDX56Q9NY93 SATB1-AS1-216ENST00000598149 1119 ntTSL 2 BASIC30.04■■■□□ 2.4
DDX56Q9NY93 NADK2-202ENST00000381937 2243 ntAPPRIS P1 TSL 2 BASIC30.04■■■□□ 2.4
DDX56Q9NY93 SERINC2-201ENST00000373709 1997 ntAPPRIS P1 TSL 1 (best) BASIC30.04■■■□□ 2.4
DDX56Q9NY93 CHCHD4-202ENST00000396914 1405 ntAPPRIS P1 TSL 1 (best) BASIC30.04■■■□□ 2.4
DDX56Q9NY93 SDCCAG3-202ENST00000357365 2304 ntAPPRIS P4 TSL 5 BASIC30.03■■■□□ 2.4
Retrieved 100 of 98,524 protein–RNA pairs in 8.5 ms