Protein–RNA interactions for Protein: Q9H211

CDT1, DNA replication factor Cdt1, humanhuman

Predictions only

Length 546 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDT1Q9H211 ANKRD65-205ENST00000537107 2190 ntAPPRIS P1 TSL 5 BASIC27.05■■□□□ 1.92
CDT1Q9H211 TTC36-201ENST00000302783 874 ntAPPRIS P1 TSL 1 (best) BASIC27.04■■□□□ 1.92
CDT1Q9H211 FCGRT-217ENST00000599988 660 ntTSL 5 BASIC27.04■■□□□ 1.92
CDT1Q9H211 PTGER1-201ENST00000292513 1421 ntAPPRIS P1 TSL 1 (best) BASIC27.04■■□□□ 1.92
CDT1Q9H211 SHOX2-201ENST00000389589 2072 ntAPPRIS P3 TSL 1 (best) BASIC27.04■■□□□ 1.92
CDT1Q9H211 HDHD5-202ENST00000336737 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC27.03■■□□□ 1.92
CDT1Q9H211 MAPK3-205ENST00000395202 1008 ntTSL 1 (best) BASIC27.03■■□□□ 1.92
CDT1Q9H211 CAPNS1-215ENST00000628018 1509 ntAPPRIS ALT2 TSL 5 BASIC27.03■■□□□ 1.92
CDT1Q9H211 ACTG1-210ENST00000575842 2256 ntAPPRIS P1 TSL 1 (best) BASIC27.02■■□□□ 1.92
CDT1Q9H211 MFSD12-201ENST00000355415 2124 ntAPPRIS P3 TSL 1 (best) BASIC27.02■■□□□ 1.92
CDT1Q9H211 TMEM9-201ENST00000367330 1959 ntAPPRIS P3 TSL 1 (best) BASIC27.02■■□□□ 1.92
CDT1Q9H211 PQLC3-201ENST00000295083 1830 ntAPPRIS P1 TSL 1 (best) BASIC27.02■■□□□ 1.92
CDT1Q9H211 ANKRD53-203ENST00000441349 1797 ntTSL 5 BASIC27.02■■□□□ 1.92
CDT1Q9H211 PDK1-202ENST00000392571 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC27.01■■□□□ 1.91
CDT1Q9H211 PXDC1-202ENST00000380283 2190 ntAPPRIS P1 TSL 1 (best) BASIC27.01■■□□□ 1.91
CDT1Q9H211 EFEMP2-201ENST00000307998 2034 ntAPPRIS P1 TSL 1 (best) BASIC27.01■■□□□ 1.91
CDT1Q9H211 LOR-201ENST00000368742 1230 ntAPPRIS P1 TSL 1 (best) BASIC27.01■■□□□ 1.91
CDT1Q9H211 ENDOG-201ENST00000372642 1172 ntAPPRIS P1 TSL 1 (best) BASIC27.01■■□□□ 1.91
CDT1Q9H211 AC018755.3-201ENST00000598755 664 ntTSL 2 BASIC27.01■■□□□ 1.91
CDT1Q9H211 ABHD12-202ENST00000376542 1725 ntTSL 1 (best) BASIC27■■□□□ 1.91
CDT1Q9H211 PPAN-202ENST00000393793 1575 ntTSL 5 BASIC27■■□□□ 1.91
CDT1Q9H211 AC009690.3-201ENST00000569547 1902 ntAPPRIS P1 TSL 2 BASIC27■■□□□ 1.91
CDT1Q9H211 C8orf58-202ENST00000409586 2021 ntAPPRIS ALT2 TSL 2 BASIC26.99■■□□□ 1.91
CDT1Q9H211 ARL6IP4-208ENST00000439686 796 ntAPPRIS ALT2 TSL 3 BASIC26.99■■□□□ 1.91
CDT1Q9H211 C14orf80-205ENST00000392523 1845 ntAPPRIS ALT2 TSL 1 (best) BASIC26.99■■□□□ 1.91
CDT1Q9H211 MEN1-204ENST00000377313 1871 ntAPPRIS P3 TSL 2 BASIC26.98■■□□□ 1.91
CDT1Q9H211 LIME1-206ENST00000487026 805 ntAPPRIS ALT2 TSL 5 BASIC26.97■■□□□ 1.91
CDT1Q9H211 AC025884.2-201ENST00000553429 711 ntBASIC26.97■■□□□ 1.91
CDT1Q9H211 LDLRAD3-203ENST00000528989 1879 ntTSL 1 (best) BASIC26.97■■□□□ 1.91
CDT1Q9H211 CCND3-205ENST00000415497 1843 ntTSL 2 BASIC26.97■■□□□ 1.91
CDT1Q9H211 AL449106.1-201ENST00000608517 1980 ntBASIC26.96■■□□□ 1.91
CDT1Q9H211 SMPD5-203ENST00000639008 1464 ntBASIC26.95■■□□□ 1.91
CDT1Q9H211 FLVCR1-AS1-203ENST00000426161 892 ntTSL 1 (best) BASIC26.95■■□□□ 1.9
CDT1Q9H211 C16orf52-207ENST00000569656 1257 ntTSL 5 BASIC26.95■■□□□ 1.9
CDT1Q9H211 REST-210ENST00000638187 1334 ntTSL 5 BASIC26.94■■□□□ 1.9
CDT1Q9H211 NKIRAS2-208ENST00000462043 585 ntTSL 4 BASIC26.94■■□□□ 1.9
CDT1Q9H211 AC007029.1-201ENST00000604183 313 ntBASIC26.94■■□□□ 1.9
CDT1Q9H211 OPRD1-202ENST00000621425 1217 ntTSL 1 (best) BASIC26.94■■□□□ 1.9
CDT1Q9H211 RAD51-208ENST00000532743 1515 ntTSL 2 BASIC26.94■■□□□ 1.9
CDT1Q9H211 PBX1-202ENST00000367897 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC26.93■■□□□ 1.9
CDT1Q9H211 HYI-213ENST00000583037 1322 ntTSL 5 BASIC26.93■■□□□ 1.9
CDT1Q9H211 BBC3-204ENST00000449228 1827 ntTSL 1 (best) BASIC26.93■■□□□ 1.9
CDT1Q9H211 BTBD19-201ENST00000409335 1214 ntTSL 5 BASIC26.93■■□□□ 1.9
CDT1Q9H211 ADAMTSL5-202ENST00000395467 1533 ntTSL 5 BASIC26.93■■□□□ 1.9
CDT1Q9H211 PHYH-201ENST00000263038 1577 ntAPPRIS P1 TSL 1 (best) BASIC26.92■■□□□ 1.9
CDT1Q9H211 GGA1-204ENST00000381756 2107 ntTSL 1 (best) BASIC26.92■■□□□ 1.9
CDT1Q9H211 AL359504.2-201ENST00000605506 1601 ntBASIC26.92■■□□□ 1.9
CDT1Q9H211 PTCH1-210ENST00000468211 1254 ntTSL 1 (best) BASIC26.92■■□□□ 1.9
CDT1Q9H211 ELOC-207ENST00000522337 816 ntAPPRIS P1 TSL 2 BASIC26.92■■□□□ 1.9
CDT1Q9H211 GADD45A-205ENST00000617962 1142 ntTSL 1 (best) BASIC26.92■■□□□ 1.9
CDT1Q9H211 VIPR2-204ENST00000421760 717 ntTSL 3 BASIC26.91■■□□□ 1.9
CDT1Q9H211 PXMP2-205ENST00000543589 632 ntTSL 3 BASIC26.91■■□□□ 1.9
CDT1Q9H211 C16orf95-206ENST00000618367 974 ntAPPRIS ALT2 TSL 2 BASIC26.91■■□□□ 1.9
CDT1Q9H211 KAZN-207ENST00000503743 1475 ntTSL 1 (best) BASIC26.91■■□□□ 1.9
CDT1Q9H211 CABP1-202ENST00000316803 1658 ntTSL 1 (best) BASIC26.91■■□□□ 1.9
CDT1Q9H211 CRTAP-202ENST00000449224 1811 ntAPPRIS ALT2 TSL 2 BASIC26.9■■□□□ 1.9
CDT1Q9H211 MDFIC-206ENST00000448022 484 ntTSL 2 BASIC26.9■■□□□ 1.9
CDT1Q9H211 RBPMS-209ENST00000520161 842 ntTSL 2 BASIC26.9■■□□□ 1.9
CDT1Q9H211 U85056.1-201ENST00000616429 682 ntBASIC26.9■■□□□ 1.9
CDT1Q9H211 NTF6A-201ENST00000591175 560 ntBASIC26.89■■□□□ 1.9
CDT1Q9H211 CLEC11A-201ENST00000250340 1419 ntAPPRIS P1 TSL 1 (best) BASIC26.89■■□□□ 1.89
CDT1Q9H211 VSIG8-201ENST00000368100 1818 ntAPPRIS P1 TSL 1 (best) BASIC26.88■■□□□ 1.89
CDT1Q9H211 AP003068.2-202ENST00000526623 1662 ntTSL 2 BASIC26.88■■□□□ 1.89
CDT1Q9H211 APLP1-201ENST00000221891 2495 ntAPPRIS P1 TSL 1 (best) BASIC26.88■■□□□ 1.89
CDT1Q9H211 MXRA7-202ENST00000375036 1950 ntAPPRIS ALT2 TSL 2 BASIC26.88■■□□□ 1.89
CDT1Q9H211 PLEKHF1-201ENST00000436066 2084 ntAPPRIS P1 TSL 1 (best) BASIC26.87■■□□□ 1.89
CDT1Q9H211 ZMYND19-201ENST00000298585 1375 ntAPPRIS P1 TSL 1 (best) BASIC26.86■■□□□ 1.89
CDT1Q9H211 CDPF1-201ENST00000314567 1875 ntAPPRIS P2 TSL 1 (best) BASIC26.86■■□□□ 1.89
CDT1Q9H211 SHF-208ENST00000560734 1731 ntTSL 3 BASIC26.86■■□□□ 1.89
CDT1Q9H211 UCK1-204ENST00000372215 2167 ntAPPRIS P1 TSL 1 (best) BASIC26.85■■□□□ 1.89
CDT1Q9H211 DEXI-202ENST00000469379 1393 ntAPPRIS P1 TSL 2 BASIC26.85■■□□□ 1.89
CDT1Q9H211 SCCPDH-201ENST00000366510 2503 ntAPPRIS P1 TSL 1 (best) BASIC26.85■■□□□ 1.89
CDT1Q9H211 ACAA1-220ENST00000627515 1862 ntTSL 5 BASIC26.85■■□□□ 1.89
CDT1Q9H211 RTN2-202ENST00000344680 2063 ntAPPRIS P1 TSL 1 (best) BASIC26.85■■□□□ 1.89
CDT1Q9H211 CAMK1D-203ENST00000615792 1725 ntTSL 5 BASIC26.85■■□□□ 1.89
CDT1Q9H211 PFN2-211ENST00000489155 636 ntTSL 4 BASIC26.84■■□□□ 1.89
CDT1Q9H211 TRIM52-AS1-202ENST00000507434 672 ntTSL 1 (best) BASIC26.84■■□□□ 1.89
CDT1Q9H211 C19orf12-207ENST00000592153 1504 ntTSL 1 (best) BASIC26.84■■□□□ 1.89
CDT1Q9H211 WBP1-202ENST00000393972 1325 ntTSL 2 BASIC26.84■■□□□ 1.89
CDT1Q9H211 TIGD3-201ENST00000309880 2012 ntAPPRIS P1 TSL 2 BASIC26.83■■□□□ 1.89
CDT1Q9H211 ZNF775-201ENST00000329630 2257 ntAPPRIS P1 TSL 1 (best) BASIC26.83■■□□□ 1.89
CDT1Q9H211 VEGFA-209ENST00000425836 1575 ntAPPRIS ALT2 TSL 1 (best) BASIC26.83■■□□□ 1.89
CDT1Q9H211 PKIG-205ENST00000372891 1443 ntAPPRIS P1 TSL 2 BASIC26.82■■□□□ 1.88
CDT1Q9H211 PQLC3-204ENST00000441908 1784 ntTSL 2 BASIC26.82■■□□□ 1.88
CDT1Q9H211 POTEF-201ENST00000361163 1586 ntTSL 5 BASIC26.82■■□□□ 1.88
CDT1Q9H211 SP8-202ENST00000418710 1618 ntAPPRIS ALT2 TSL 1 (best) BASIC26.82■■□□□ 1.88
CDT1Q9H211 CTSA-203ENST00000372459 1972 ntTSL 1 (best) BASIC26.82■■□□□ 1.88
CDT1Q9H211 RHEB-201ENST00000262187 2075 ntAPPRIS P1 TSL 1 (best) BASIC26.81■■□□□ 1.88
CDT1Q9H211 PLPPR3-204ENST00000520876 2328 ntAPPRIS ALT2 TSL 1 (best) BASIC26.81■■□□□ 1.88
CDT1Q9H211 RNF175-201ENST00000347063 1604 ntAPPRIS P1 TSL 1 (best) BASIC26.81■■□□□ 1.88
CDT1Q9H211 AL590677.1-201ENST00000438431 380 ntTSL 5 BASIC26.81■■□□□ 1.88
CDT1Q9H211 RP9P-202ENST00000450133 1212 ntBASIC26.81■■□□□ 1.88
CDT1Q9H211 AC107214.1-201ENST00000457303 559 ntTSL 1 (best) BASIC26.81■■□□□ 1.88
CDT1Q9H211 FAAH-201ENST00000243167 2094 ntAPPRIS P1 TSL 1 (best) BASIC26.81■■□□□ 1.88
CDT1Q9H211 C1QTNF5-202ENST00000528368 1356 ntAPPRIS P1 TSL 1 (best) BASIC26.81■■□□□ 1.88
CDT1Q9H211 SLC9A3-AS1-207ENST00000607286 1357 ntTSL 5 BASIC26.81■■□□□ 1.88
CDT1Q9H211 RSPH1-201ENST00000291536 1430 ntAPPRIS P1 TSL 1 (best) BASIC26.81■■□□□ 1.88
CDT1Q9H211 RAB40C-201ENST00000248139 2699 ntAPPRIS P1 TSL 1 (best) BASIC26.81■■□□□ 1.88
CDT1Q9H211 TMEM55B-201ENST00000250489 1961 ntAPPRIS P3 TSL 1 (best) BASIC26.8■■□□□ 1.88
CDT1Q9H211 AC009831.1-201ENST00000580420 1582 ntBASIC26.8■■□□□ 1.88
Retrieved 100 of 98,524 protein–RNA pairs in 19.9 ms