Protein–RNA interactions for Protein: Q8NHQ9

DDX55, ATP-dependent RNA helicase DDX55, humanhuman

Known RBP eCLIP

Length 600 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55Q8NHQ9 GRAMD4-203ENST00000408031 2834 ntTSL 1 (best) BASIC16.31■□□□□ 0.21e-6■■■■■ 29.6
DDX55Q8NHQ9 PUF60-209ENST00000527197 1559 ntTSL 5 BASIC16.06■□□□□ 0.162e-26■■■■■ 29.6
DDX55Q8NHQ9 SYMPK-215ENST00000600237 5164 ntTSL 515.95■□□□□ 0.146e-7■■■■■ 29.6
DDX55Q8NHQ9 SYMPK-202ENST00000593504 5107 ntTSL 215.95■□□□□ 0.146e-7■■■■■ 29.6
DDX55Q8NHQ9 GRAMD4-202ENST00000406902 4484 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.131e-6■■■■■ 29.6
DDX55Q8NHQ9 NPLOC4-213ENST00000573519 654 ntTSL 1 (best)15.64■□□□□ 0.091e-6■■■■■ 29.6
DDX55Q8NHQ9 NPLOC4-214ENST00000573876 560 ntTSL 4 BASIC15.36■□□□□ 0.051e-6■■■■■ 29.6
DDX55Q8NHQ9 GOLGA2-212ENST00000609374 2973 ntTSL 1 (best) BASIC15.26■□□□□ 0.031e-7■■■■■ 29.6
DDX55Q8NHQ9 NOC2L-201ENST00000327044 2790 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.032e-7■■■■■ 29.6
DDX55Q8NHQ9 SYMPK-207ENST00000596824 653 ntTSL 314.38□□□□□ -0.116e-7■■■■■ 29.6
DDX55Q8NHQ9 GRAMD4-201ENST00000361034 4315 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.151e-6■■■■■ 29.6
DDX55Q8NHQ9 NPLOC4-206ENST00000571714 676 ntTSL 514.1□□□□□ -0.151e-6■■■■■ 29.6
DDX55Q8NHQ9 ZNF410-201ENST00000324593 2293 ntTSL 1 (best) BASIC13.85□□□□□ -0.191e-6■■■■■ 29.6
DDX55Q8NHQ9 SYMPK-201ENST00000245934 4195 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.26e-7■■■■■ 29.6
DDX55Q8NHQ9 NPLOC4-202ENST00000374747 5538 ntTSL 2 BASIC13.63□□□□□ -0.231e-6■■■■■ 29.6
DDX55Q8NHQ9 COA1-208ENST00000431651 720 ntAPPRIS ALT2 TSL 313.53□□□□□ -0.241e-6■■■■■ 29.6
DDX55Q8NHQ9 NPLOC4-220ENST00000576940 216 ntTSL 512.88□□□□□ -0.351e-6■■■■■ 29.6
DDX55Q8NHQ9 COA1-202ENST00000310564 1085 ntAPPRIS P3 TSL 2 BASIC12.09□□□□□ -0.471e-6■■■■■ 29.6
DDX55Q8NHQ9 COA1-205ENST00000415798 524 ntAPPRIS ALT2 TSL 412.04□□□□□ -0.481e-6■■■■■ 29.6
DDX55Q8NHQ9 NOC2L-203ENST00000477976 4201 ntTSL 511.95□□□□□ -0.52e-7■■■■■ 29.6
DDX55Q8NHQ9 IGF1R-201ENST00000268035 11803 ntAPPRIS P3 TSL 1 (best) BASIC11.67□□□□□ -0.541e-6■■■■■ 29.6
DDX55Q8NHQ9 NPLOC4-210ENST00000572824 559 ntTSL 411.53□□□□□ -0.561e-6■■■■■ 29.6
DDX55Q8NHQ9 NPLOC4-219ENST00000576713 571 ntTSL 511.42□□□□□ -0.581e-6■■■■■ 29.6
DDX55Q8NHQ9 COA1-204ENST00000415076 1737 ntTSL 310.41□□□□□ -0.741e-6■■■■■ 29.6
DDX55Q8NHQ9 NPLOC4-211ENST00000573212 564 ntTSL 410.3□□□□□ -0.761e-6■■■■■ 29.6
DDX55Q8NHQ9 COA1-209ENST00000438444 3223 ntTSL 29.98□□□□□ -0.811e-6■■■■■ 29.6
DDX55Q8NHQ9 COA1-219ENST00000490251 2135 ntTSL 29.91□□□□□ -0.821e-6■■■■■ 29.6
DDX55Q8NHQ9 COA1-203ENST00000395879 2448 ntAPPRIS P3 TSL 1 (best) BASIC9.38□□□□□ -0.911e-6■■■■■ 29.6
DDX55Q8NHQ9 IGF1R-206ENST00000558762 11726 ntAPPRIS ALT1 TSL 1 (best) BASIC9.31□□□□□ -0.921e-6■■■■■ 29.6
DDX55Q8NHQ9 COA1-210ENST00000446330 1520 ntTSL 28.95□□□□□ -0.981e-6■■■■■ 29.6
DDX55Q8NHQ9 AC005520.1-201ENST00000556551 3695 ntAPPRIS P1 TSL 2 BASIC8.92□□□□□ -0.981e-6■■■■■ 29.6
DDX55Q8NHQ9 COA1-211ENST00000446564 1177 ntTSL 28.82□□□□□ -11e-6■■■■■ 29.6
DDX55Q8NHQ9 ZNF410-203ENST00000398139 2461 ntTSL 1 (best)7.61□□□□□ -1.191e-6■■■■■ 29.6
DDX55Q8NHQ9 ZNF410-202ENST00000334521 2193 ntTSL 5 BASIC7.03□□□□□ -1.281e-6■■■■■ 29.6
DDX55Q8NHQ9 COA1-201ENST00000223336 927 ntAPPRIS P3 TSL 2 BASIC5.97□□□□□ -1.451e-6■■■■■ 29.6
DDX55Q8NHQ9 ZNF410-211ENST00000555044 2601 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.521e-6■■■■■ 29.6
DDX55Q8NHQ9 SLC9A3R2-202ENST00000432365 1564 ntTSL 1 (best) BASIC31.67■■■□□ 2.662e-6■■■■■ 29.5
DDX55Q8NHQ9 SLC9A3R2-201ENST00000424542 2194 ntAPPRIS P1 TSL 1 (best) BASIC26.51■■□□□ 1.842e-6■■■■■ 29.5
DDX55Q8NHQ9 SLC9A3R2-208ENST00000566198 1199 ntTSL 2 BASIC21.39■■□□□ 1.012e-6■■■■■ 29.5
DDX55Q8NHQ9 CAMTA2-206ENST00000572192 856 ntTSL 216.8■□□□□ 0.283e-6■■■■■ 29.5
DDX55Q8NHQ9 PES1-201ENST00000335214 1988 ntAPPRIS ALT1 TSL 1 (best) BASIC16.44■□□□□ 0.221e-7■■■■■ 29.5
DDX55Q8NHQ9 CAMTA2-210ENST00000574442 764 ntTSL 216.17■□□□□ 0.183e-6■■■■■ 29.5
DDX55Q8NHQ9 CAMTA2-204ENST00000414043 4589 ntTSL 1 (best) BASIC13.99□□□□□ -0.173e-6■■■■■ 29.5
DDX55Q8NHQ9 CAMTA2-202ENST00000361571 4777 ntTSL 1 (best) BASIC13.38□□□□□ -0.273e-6■■■■■ 29.5
DDX55Q8NHQ9 CAMTA2-201ENST00000348066 4491 ntAPPRIS P2 TSL 1 (best) BASIC12.9□□□□□ -0.353e-6■■■■■ 29.5
DDX55Q8NHQ9 CAMTA2-208ENST00000572543 4496 ntAPPRIS ALT2 TSL 5 BASIC12.68□□□□□ -0.383e-6■■■■■ 29.5
DDX55Q8NHQ9 CAMTA2-212ENST00000574951 4431 ntTSL 512.59□□□□□ -0.393e-6■■■■■ 29.5
DDX55Q8NHQ9 CAMTA2-203ENST00000381311 4374 ntTSL 1 (best) BASIC11.61□□□□□ -0.553e-6■■■■■ 29.5
DDX55Q8NHQ9 NDUFS6-201ENST00000274137 1082 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.334e-14■■■■■ 29.2
DDX55Q8NHQ9 CIC-201ENST00000160740 6111 ntAPPRIS ALT1 TSL 5 BASIC27.48■■□□□ 1.995e-10■■■■■ 29.1
DDX55Q8NHQ9 CIC-209ENST00000576505 1304 ntTSL 322.08■■□□□ 1.135e-10■■■■■ 29.1
DDX55Q8NHQ9 CIC-207ENST00000575354 5473 ntAPPRIS P2 TSL 1 (best) BASIC16.05■□□□□ 0.165e-10■■■■■ 29.1
DDX55Q8NHQ9 CIC-204ENST00000572681 8218 ntTSL 5 BASIC14.39□□□□□ -0.115e-10■■■■■ 29.1
DDX55Q8NHQ9 STARD3-229ENST00000585269 1346 ntTSL 527.05■■□□□ 1.924e-7■■■■■ 29.1
DDX55Q8NHQ9 STARD3-202ENST00000394250 1949 ntTSL 2 BASIC21.63■■□□□ 1.054e-7■■■■■ 29.1
DDX55Q8NHQ9 STARD3-219ENST00000580611 1989 ntTSL 5 BASIC21.1■□□□□ 0.974e-7■■■■■ 29.1
DDX55Q8NHQ9 STARD3-201ENST00000336308 2132 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.94e-7■■■■■ 29.1
DDX55Q8NHQ9 STARD3-205ENST00000471896 2129 ntTSL 219.61■□□□□ 0.734e-7■■■■■ 29.1
DDX55Q8NHQ9 STARD3-227ENST00000584850 2442 ntTSL 217.96■□□□□ 0.474e-7■■■■■ 29.1
DDX55Q8NHQ9 STARD3-208ENST00000488876 2404 ntTSL 216.48■□□□□ 0.234e-7■■■■■ 29.1
DDX55Q8NHQ9 STARD3-206ENST00000481171 3451 ntTSL 212.11□□□□□ -0.474e-7■■■■■ 29.1
DDX55Q8NHQ9 UNC45A-207ENST00000487875 2641 ntTSL 215.32■□□□□ 0.046e-12■■■■■ 29.1
DDX55Q8NHQ9 UNC45A-201ENST00000394275 4002 ntAPPRIS ALT2 TSL 1 (best) BASIC12.2□□□□□ -0.466e-12■■■■■ 29.1
DDX55Q8NHQ9 UNC45A-202ENST00000418476 3252 ntAPPRIS P3 TSL 1 (best) BASIC12.12□□□□□ -0.476e-12■■■■■ 29.1
DDX55Q8NHQ9 CLCN5-202ENST00000376088 10108 ntTSL 2 BASIC6.16□□□□□ -1.421e-6■■■■■ 29.1
DDX55Q8NHQ9 PIEZO1-201ENST00000301015 8072 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.539e-8■■■■■ 29
DDX55Q8NHQ9 POM121C-208ENST00000615331 5835 ntAPPRIS P2 TSL 1 (best) BASIC19.27■□□□□ 0.673e-14■■■■■ 28.9
DDX55Q8NHQ9 POM121C-207ENST00000614583 4073 ntTSL 214.71□□□□□ -0.053e-14■■■■■ 28.9
DDX55Q8NHQ9 ASF1B-201ENST00000263382 2059 ntAPPRIS P1 TSL 1 (best) BASIC24.15■■□□□ 1.468e-11■■■■■ 28.7
DDX55Q8NHQ9 LMNB1-201ENST00000261366 2878 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.233e-13■■■■■ 28.7
DDX55Q8NHQ9 LMNB1-203ENST00000460265 3475 ntTSL 1 (best)16.24■□□□□ 0.193e-13■■■■■ 28.7
DDX55Q8NHQ9 CTSF-201ENST00000310325 2035 ntAPPRIS P1 TSL 1 (best) BASIC24.99■■□□□ 1.592e-6■■■■■ 28.7
DDX55Q8NHQ9 FAM208A-209ENST00000493960 5600 ntAPPRIS P2 TSL 5 BASIC18.78■□□□□ 0.62e-11■■■■■ 28.7
DDX55Q8NHQ9 CTSF-205ENST00000527141 1856 ntTSL 217.31■□□□□ 0.362e-6■■■■■ 28.7
DDX55Q8NHQ9 FAM208A-203ENST00000459993 5099 ntTSL 1 (best)5.53□□□□□ -1.522e-11■■■■■ 28.7
DDX55Q8NHQ9 FAM208A-202ENST00000431842 7119 ntTSL 1 (best) BASIC4.85□□□□□ -1.632e-11■■■■■ 28.7
DDX55Q8NHQ9 NDUFV1-210ENST00000527923 594 ntTSL 224.48■■□□□ 1.511e-6■■■■■ 28.6
DDX55Q8NHQ9 NDUFV1-228ENST00000534352 573 ntTSL 223.61■■□□□ 1.372e-10■■■■■ 28.6
DDX55Q8NHQ9 NDUFV1-220ENST00000531250 736 ntTSL 222.4■■□□□ 1.182e-10■■■■■ 28.6
DDX55Q8NHQ9 NDUFV1-208ENST00000526770 1748 ntTSL 520.56■□□□□ 0.887e-7■■■■■ 28.6
DDX55Q8NHQ9 NDUFV1-201ENST00000322776 1596 ntAPPRIS P3 TSL 1 (best) BASIC20.26■□□□□ 0.837e-7■■■■■ 28.6
DDX55Q8NHQ9 NDUFV1-216ENST00000529927 1503 ntAPPRIS ALT1 TSL 1 (best) BASIC20.03■□□□□ 0.87e-7■■■■■ 28.6
DDX55Q8NHQ9 NDUFV1-223ENST00000532303 1493 ntTSL 2 BASIC18.77■□□□□ 0.67e-7■■■■■ 28.6
DDX55Q8NHQ9 NDUFV1-202ENST00000415352 1512 ntAPPRIS ALT1 TSL 2 BASIC18.44■□□□□ 0.547e-7■■■■■ 28.6
DDX55Q8NHQ9 NDUFV1-226ENST00000533919 774 ntTSL 318.38■□□□□ 0.537e-7■■■■■ 28.6
DDX55Q8NHQ9 NDUFV1-209ENST00000527355 679 ntTSL 218.38■□□□□ 0.537e-7■■■■■ 28.6
DDX55Q8NHQ9 TEAD3-202ENST00000402886 2729 ntTSL 1 (best) BASIC16.83■□□□□ 0.281e-11■■■■■ 28.5
DDX55Q8NHQ9 TEAD3-201ENST00000338863 2983 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.171e-11■■■■■ 28.5
DDX55Q8NHQ9 RETREG3-208ENST00000589797 4149 ntTSL 215.26■□□□□ 0.038e-8■■■■■ 28.2
DDX55Q8NHQ9 RETREG3-201ENST00000309428 3759 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.288e-8■■■■■ 28.2
DDX55Q8NHQ9 ATAD3B-201ENST00000308647 2448 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.381e-6■■■■■ 28.2
DDX55Q8NHQ9 ATAD3B-205ENST00000485748 3233 ntTSL 216.44■□□□□ 0.221e-6■■■■■ 28.2
DDX55Q8NHQ9 ATAD3B-204ENST00000474481 3367 ntTSL 215.88■□□□□ 0.131e-6■■■■■ 28.2
DDX55Q8NHQ9 ATAD3B-203ENST00000472194 4314 ntTSL 1 (best)12.66□□□□□ -0.381e-6■■■■■ 28.2
DDX55Q8NHQ9 GLS-201ENST00000320717 4834 ntAPPRIS P3 TSL 1 (best) BASIC21.41■■□□□ 1.021e-7■■■■■ 28.1
DDX55Q8NHQ9 B4GALT3-201ENST00000319769 1911 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.432e-8■■■■■ 28.1
DDX55Q8NHQ9 B4GALT3-213ENST00000622395 2414 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.082e-8■■■■■ 28.1
DDX55Q8NHQ9 B4GALT3-202ENST00000367998 1871 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.072e-8■■■■■ 28.1
DDX55Q8NHQ9 B4GALT3-207ENST00000470882 3178 ntTSL 512.48□□□□□ -0.412e-8■■■■■ 28.1
DDX55Q8NHQ9 HMGN2-205ENST00000466194 952 ntTSL 222.25■■□□□ 1.151e-9■■■■■ 28.1
Retrieved 100 of 15,504 protein–RNA pairs in 334.8 ms