RNA–Protein interactions for RNA: ENST00000309428.9

RETREG3-201, Transcript of reticulophagy regulator family member 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene RETREG3, Length 3,759 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RETREG3-201ENST00000309428 NISCHQ9Y2I1 1504 aa24.41■■□□□ 1.5
RETREG3-201ENST00000309428 DCAF8L2P0C7V8 631 aa22.55■■□□□ 1.2
RETREG3-201ENST00000309428 SHROOM4Q9ULL8 1493 aa22.53■■□□□ 1.2
RETREG3-201ENST00000309428 SUPT5HO00267 1087 aaKnown RBP22.21■■□□□ 1.15
RETREG3-201ENST00000309428 EHMT2Q96KQ7 1210 aa21.25■□□□□ 0.99
RETREG3-201ENST00000309428 PCGF6Q9BYE7 350 aa20.85■□□□□ 0.93
RETREG3-201ENST00000309428 FAM9AQ8IZU1 332 aaPredicted RBP20.82■□□□□ 0.92
RETREG3-201ENST00000309428 LOC105371045A0A1W2PR82 267 aa20.71■□□□□ 0.91
RETREG3-201ENST00000309428 CHIC1Q5VXU3 224 aa20.71■□□□□ 0.91
RETREG3-201ENST00000309428 PPARGC1BQ86YN6 1023 aaKnown RBP20.51■□□□□ 0.87
RETREG3-201ENST00000309428 ZCCHC6Q5VYS8 1495 aaKnown RBP20.45■□□□□ 0.86
RETREG3-201ENST00000309428 TTBK1Q5TCY1 1321 aaPredicted RBP20.43■□□□□ 0.86
RETREG3-201ENST00000309428 HRCP23327 699 aa20.39■□□□□ 0.85
RETREG3-201ENST00000309428 MYO15BQ96JP2 1530 aa20.35■□□□□ 0.85
RETREG3-201ENST00000309428 TRIM41Q8WV44 630 aa20.26■□□□□ 0.83
RETREG3-201ENST00000309428 ABCC9O60706 1549 aa20.24■□□□□ 0.83
RETREG3-201ENST00000309428 CCDC180Q9P1Z9 1646 aa20.02■□□□□ 0.8
RETREG3-201ENST00000309428 RANGAP1P46060 587 aaPredicted RBP20■□□□□ 0.79
RETREG3-201ENST00000309428 SCRIBQ14160 1630 aa19.97■□□□□ 0.79
RETREG3-201ENST00000309428 PABPN1Q86U42 306 aaKnown RBP eCLIP19.88■□□□□ 0.77
RETREG3-201ENST00000309428 TRIM26Q12899 539 aaPredicted RBP19.72■□□□□ 0.75
RETREG3-201ENST00000309428 PELP1Q8IZL8 1130 aaKnown RBP19.63■□□□□ 0.73
RETREG3-201ENST00000309428 UBTFP17480 764 aaKnown RBP19.61■□□□□ 0.73
RETREG3-201ENST00000309428 RSF1Q96T23 1441 aaPredicted RBP19.6■□□□□ 0.73
RETREG3-201ENST00000309428 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP19.58■□□□□ 0.72
RETREG3-201ENST00000309428 CECR2Q9BXF3 1484 aa19.56■□□□□ 0.72
RETREG3-201ENST00000309428 CCER1Q8TC90 406 aaPredicted RBP19.54■□□□□ 0.72
RETREG3-201ENST00000309428 YTHDC1Q96MU7 727 aaKnown RBP19.54■□□□□ 0.72
RETREG3-201ENST00000309428 ZEB1P37275 1124 aaPredicted RBP19.48■□□□□ 0.71
RETREG3-201ENST00000309428 RB1CC1Q8TDY2 1594 aa19.4■□□□□ 0.7
RETREG3-201ENST00000309428 CENPBP07199 599 aaPredicted RBP19.35■□□□□ 0.69
RETREG3-201ENST00000309428 HNRNPUL2Q1KMD3 747 aaKnown RBP19.29■□□□□ 0.68
RETREG3-201ENST00000309428 DCAF1Q9Y4B6 1507 aa19.27■□□□□ 0.68
RETREG3-201ENST00000309428 SCAF1Q9H7N4 1312 aaKnown RBP19.27■□□□□ 0.67
RETREG3-201ENST00000309428 MROH2BQ7Z745 1585 aa19.25■□□□□ 0.67
RETREG3-201ENST00000309428 GTF3C3Q9Y5Q9 886 aa19.19■□□□□ 0.66
RETREG3-201ENST00000309428 APLP2Q06481 763 aa19.16■□□□□ 0.66
RETREG3-201ENST00000309428 ITGAEP38570 1179 aa19.11■□□□□ 0.65
RETREG3-201ENST00000309428 WIZO95785 1651 aa19.11■□□□□ 0.65
RETREG3-201ENST00000309428 ATP1B4Q9UN42 357 aaPredicted RBP19.1■□□□□ 0.65
RETREG3-201ENST00000309428 DIEXFQ68CQ4 756 aaKnown RBP19.07■□□□□ 0.64
RETREG3-201ENST00000309428 ABCC8Q09428 1581 aa19.03■□□□□ 0.64
RETREG3-201ENST00000309428 NEUROD1Q13562 356 aa19.01■□□□□ 0.63
RETREG3-201ENST00000309428 CSRNP3Q8WYN3 585 aa19.01■□□□□ 0.63
RETREG3-201ENST00000309428 ACIN1Q9UKV3 1341 aaKnown RBP18.98■□□□□ 0.63
RETREG3-201ENST00000309428 SOGA1O94964 1423 aa18.96■□□□□ 0.63
RETREG3-201ENST00000309428 NACADO15069 1562 aa18.93■□□□□ 0.62
RETREG3-201ENST00000309428 CCDC88BA6NC98 1476 aa18.92■□□□□ 0.62
RETREG3-201ENST00000309428 RUSC2Q8N2Y8 1516 aa18.84■□□□□ 0.61
RETREG3-201ENST00000309428 MYT1Q01538 1121 aa18.83■□□□□ 0.6
RETREG3-201ENST00000309428 P3H3Q8IVL6 736 aa18.79■□□□□ 0.6
RETREG3-201ENST00000309428 CEP162Q5TB80 1403 aa18.75■□□□□ 0.59
RETREG3-201ENST00000309428 BAZ1AQ9NRL2 1556 aaPredicted RBP18.72■□□□□ 0.59
RETREG3-201ENST00000309428 WRNQ14191 1432 aaPredicted RBP eCLIP18.62■□□□□ 0.57
RETREG3-201ENST00000309428 BCANQ96GW7 911 aa18.59■□□□□ 0.57
RETREG3-201ENST00000309428 ARID3CA6NKF2 412 aa18.58■□□□□ 0.56
RETREG3-201ENST00000309428 FAM50AQ14320 339 aaKnown RBP18.53■□□□□ 0.56
RETREG3-201ENST00000309428 ZNF316A6NFI3 1004 aaPredicted RBP18.52■□□□□ 0.56
RETREG3-201ENST00000309428 SMARCA4P51532 1647 aa18.51■□□□□ 0.55
RETREG3-201ENST00000309428 CLIP1P30622 1438 aa18.51■□□□□ 0.55
RETREG3-201ENST00000309428 BAZ1BQ9UIG0 1483 aaKnown RBP18.49■□□□□ 0.55
RETREG3-201ENST00000309428 TOP2AP11388 1531 aaKnown RBP18.47■□□□□ 0.55
RETREG3-201ENST00000309428 TNIKQ9UKE5 1360 aa18.45■□□□□ 0.54
RETREG3-201ENST00000309428 SMARCA2P51531 1590 aa18.45■□□□□ 0.54
RETREG3-201ENST00000309428 MIER1Q8N108 512 aa18.44■□□□□ 0.54
RETREG3-201ENST00000309428 CNGB1Q14028 1251 aaPredicted RBP18.43■□□□□ 0.54
RETREG3-201ENST00000309428 KANK4Q5T7N3 995 aaPredicted RBP18.42■□□□□ 0.54
RETREG3-201ENST00000309428 HIRIP3Q9BW71 556 aaPredicted RBP18.42■□□□□ 0.54
RETREG3-201ENST00000309428 GOLGA3Q08378 1498 aa18.4■□□□□ 0.54
RETREG3-201ENST00000309428 ERICH6Q7L0X2 663 aa18.39■□□□□ 0.53
RETREG3-201ENST00000309428 RAPGEF2Q9Y4G8 1499 aa18.35■□□□□ 0.53
RETREG3-201ENST00000309428 NEFLP07196 543 aa18.33■□□□□ 0.52
RETREG3-201ENST00000309428 ATAD2BQ9ULI0 1458 aa18.3■□□□□ 0.52
RETREG3-201ENST00000309428 CEP164Q9UPV0 1460 aa18.24■□□□□ 0.51
RETREG3-201ENST00000309428 SYNJ1O43426 1573 aa18.21■□□□□ 0.51
RETREG3-201ENST00000309428 UNC13AQ9UPW8 1703 aa18.19■□□□□ 0.5
RETREG3-201ENST00000309428 EEA1Q15075 1411 aa18.18■□□□□ 0.5
RETREG3-201ENST00000309428 BICRAQ9NZM4 1560 aa18.18■□□□□ 0.5
RETREG3-201ENST00000309428 SIN3AQ96ST3 1273 aa18.16■□□□□ 0.5
RETREG3-201ENST00000309428 CHIC2Q9UKJ5 165 aa18.13■□□□□ 0.49
RETREG3-201ENST00000309428 VPS8Q8N3P4 1428 aa18.11■□□□□ 0.49
RETREG3-201ENST00000309428 POLR3GLQ9BT43 218 aa18.11■□□□□ 0.49
RETREG3-201ENST00000309428 DDX10Q13206 875 aaKnown RBP18.1■□□□□ 0.49
RETREG3-201ENST00000309428 DNAJC5BQ9UF47 199 aa18.1■□□□□ 0.49
RETREG3-201ENST00000309428 FBLN2P98095 1184 aa18.1■□□□□ 0.49
RETREG3-201ENST00000309428 CUX2O14529 1486 aa18.08■□□□□ 0.48
RETREG3-201ENST00000309428 FKBP8Q14318 412 aa18.06■□□□□ 0.48
RETREG3-201ENST00000309428 TRIM52Q96A61 297 aa18.05■□□□□ 0.48
RETREG3-201ENST00000309428 KIF27Q86VH2 1401 aa18.05■□□□□ 0.48
RETREG3-201ENST00000309428 SENP3-EIF4A1A0A087X0R7 540 aa18.03■□□□□ 0.48
RETREG3-201ENST00000309428 KCNH8Q96L42 1107 aa18.03■□□□□ 0.48
RETREG3-201ENST00000309428 EIF4G1Q04637 1599 aaKnown RBP18.02■□□□□ 0.47
RETREG3-201ENST00000309428 RRP7BPQ9NSQ0 103 aa17.96■□□□□ 0.47
RETREG3-201ENST00000309428 CARMIL1Q5VZK9 1371 aa17.95■□□□□ 0.46
RETREG3-201ENST00000309428 ZNF326Q5BKZ1 582 aaKnown RBP17.94■□□□□ 0.46
RETREG3-201ENST00000309428 TDRD9Q8NDG6 1382 aaKnown RBP17.94■□□□□ 0.46
RETREG3-201ENST00000309428 SUPT16HQ9Y5B9 1047 aaKnown RBP17.92■□□□□ 0.46
RETREG3-201ENST00000309428 KIF21BO75037 1637 aa17.91■□□□□ 0.46
RETREG3-201ENST00000309428 ARAP1Q96P48 1450 aa17.91■□□□□ 0.46
RETREG3-201ENST00000309428 ZNF777Q9ULD5 760 aaPredicted RBP17.89■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms