RNA–Protein interactions for RNA: ENST00000572824.1

NPLOC4-210, Transcript of NPL4 homolog, ubiquitin recognition factor, humanhuman

TSL 4

Gene NPLOC4, Length 559 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPLOC4-210ENST00000572824 AEBP2Q6ZN18 517 aaPredicted RBP28.21■■■□□ 2.11
NPLOC4-210ENST00000572824 CHIC1Q5VXU3 224 aa27.8■■■□□ 2.04
NPLOC4-210ENST00000572824 PHF23Q9BUL5 403 aaPredicted RBP24.5■■□□□ 1.51
NPLOC4-210ENST00000572824 SENP3Q9H4L4 574 aaPredicted RBP23.85■■□□□ 1.41
NPLOC4-210ENST00000572824 NISCHQ9Y2I1 1504 aa23.32■■□□□ 1.32
NPLOC4-210ENST00000572824 PLPPR3Q6T4P5 718 aa22.68■■□□□ 1.22
NPLOC4-210ENST00000572824 FOXD1Q16676 465 aa22.13■■□□□ 1.13
NPLOC4-210ENST00000572824 PPP6R1Q9UPN7 881 aa21.53■■□□□ 1.04
NPLOC4-210ENST00000572824 ADRA2BP18089 450 aa21.51■■□□□ 1.03
NPLOC4-210ENST00000572824 ABCC9O60706 1549 aa20.94■□□□□ 0.94
NPLOC4-210ENST00000572824 CCDC180Q9P1Z9 1646 aa20.92■□□□□ 0.94
NPLOC4-210ENST00000572824 PIAS4Q8N2W9 510 aaPredicted RBP20.91■□□□□ 0.94
NPLOC4-210ENST00000572824 MSH5O43196 834 aa20.27■□□□□ 0.84
NPLOC4-210ENST00000572824 PPP4R3CPQ6ZMV5 832 aa20.03■□□□□ 0.8
NPLOC4-210ENST00000572824 KCNA4P22459 653 aa19.88■□□□□ 0.77
NPLOC4-210ENST00000572824 RB1CC1Q8TDY2 1594 aa19.83■□□□□ 0.77
NPLOC4-210ENST00000572824 NACADO15069 1562 aa19.68■□□□□ 0.74
NPLOC4-210ENST00000572824 SCAF1Q9H7N4 1312 aaKnown RBP19.65■□□□□ 0.74
NPLOC4-210ENST00000572824 UNC13AQ9UPW8 1703 aa19.64■□□□□ 0.73
NPLOC4-210ENST00000572824 DNAJC5BQ9UF47 199 aa19.62■□□□□ 0.73
NPLOC4-210ENST00000572824 DCAF8L2P0C7V8 631 aa19.6■□□□□ 0.73
NPLOC4-210ENST00000572824 NCBP3Q53F19 620 aaKnown RBP19.56■□□□□ 0.72
NPLOC4-210ENST00000572824 PABPN1Q86U42 306 aaKnown RBP eCLIP19.47■□□□□ 0.71
NPLOC4-210ENST00000572824 MAPK8IP2Q13387 824 aaPredicted RBP19.44■□□□□ 0.7
NPLOC4-210ENST00000572824 BICRAQ9NZM4 1560 aa19.41■□□□□ 0.7
NPLOC4-210ENST00000572824 CNKSR2Q8WXI2 1034 aa19.4■□□□□ 0.7
NPLOC4-210ENST00000572824 ZCCHC6Q5VYS8 1495 aaKnown RBP19.37■□□□□ 0.69
NPLOC4-210ENST00000572824 MYO15BQ96JP2 1530 aa19.35■□□□□ 0.69
NPLOC4-210ENST00000572824 NPM3O75607 178 aaKnown RBP19.3■□□□□ 0.68
NPLOC4-210ENST00000572824 SCRIBQ14160 1630 aa19.18■□□□□ 0.66
NPLOC4-210ENST00000572824 DCAF1Q9Y4B6 1507 aa19.17■□□□□ 0.66
NPLOC4-210ENST00000572824 DMRT2Q9Y5R5 561 aa19.1■□□□□ 0.65
NPLOC4-210ENST00000572824 SLC4A1APQ9BWU0 796 aaKnown RBP18.96■□□□□ 0.63
NPLOC4-210ENST00000572824 RNF216Q9NWF9 866 aaPredicted RBP18.96■□□□□ 0.63
NPLOC4-210ENST00000572824 CC2D2AQ9P2K1 1620 aa18.92■□□□□ 0.62
NPLOC4-210ENST00000572824 SHROOM4Q9ULL8 1493 aa18.89■□□□□ 0.61
NPLOC4-210ENST00000572824 EIF4G1Q04637 1599 aaKnown RBP18.86■□□□□ 0.61
NPLOC4-210ENST00000572824 HOXD11P31277 338 aaPredicted RBP18.82■□□□□ 0.6
NPLOC4-210ENST00000572824 CECR2Q9BXF3 1484 aa18.78■□□□□ 0.6
NPLOC4-210ENST00000572824 EHMT2Q96KQ7 1210 aa18.72■□□□□ 0.59
NPLOC4-210ENST00000572824 CSRNP3Q8WYN3 585 aa18.42■□□□□ 0.54
NPLOC4-210ENST00000572824 ZBTB22O15209 634 aa18.31■□□□□ 0.52
NPLOC4-210ENST00000572824 SMARCA4P51532 1647 aa18.24■□□□□ 0.51
NPLOC4-210ENST00000572824 DCAF8L1A6NGE4 600 aa18.22■□□□□ 0.51
NPLOC4-210ENST00000572824 FOXD4L1Q9NU39 408 aa18.2■□□□□ 0.5
NPLOC4-210ENST00000572824 SLC4A2P04920 1241 aa18.18■□□□□ 0.5
NPLOC4-210ENST00000572824 ATAD2BQ9ULI0 1458 aa18.18■□□□□ 0.5
NPLOC4-210ENST00000572824 NCAPD3P42695 1498 aa18.15■□□□□ 0.5
NPLOC4-210ENST00000572824 HMGXB3Q12766 1538 aa18.08■□□□□ 0.49
NPLOC4-210ENST00000572824 SMARCA2P51531 1590 aa18.08■□□□□ 0.48
NPLOC4-210ENST00000572824 NESP48681 1621 aa18.06■□□□□ 0.48
NPLOC4-210ENST00000572824 MROH2BQ7Z745 1585 aa18.05■□□□□ 0.48
NPLOC4-210ENST00000572824 BAZ1AQ9NRL2 1556 aaPredicted RBP18.05■□□□□ 0.48
NPLOC4-210ENST00000572824 POTEDQ86YR6 584 aa18■□□□□ 0.47
NPLOC4-210ENST00000572824 BAZ1BQ9UIG0 1483 aaKnown RBP18■□□□□ 0.47
NPLOC4-210ENST00000572824 PEG3Q9GZU2 1588 aa17.99■□□□□ 0.47
NPLOC4-210ENST00000572824 ERCC6Q03468 1493 aa17.97■□□□□ 0.47
NPLOC4-210ENST00000572824 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.91■□□□□ 0.466e-8■■□□□ 14.5
NPLOC4-210ENST00000572824 WIZO95785 1651 aa17.89■□□□□ 0.45
NPLOC4-210ENST00000572824 CUX2O14529 1486 aa17.88■□□□□ 0.45
NPLOC4-210ENST00000572824 KIF21AQ7Z4S6 1674 aa17.87■□□□□ 0.45
NPLOC4-210ENST00000572824 THOC2Q8NI27 1593 aaKnown RBP17.86■□□□□ 0.45
NPLOC4-210ENST00000572824 MYCNP04198 464 aaPredicted RBP17.81■□□□□ 0.44
NPLOC4-210ENST00000572824 DNAJC5Q9H3Z4 198 aa17.8■□□□□ 0.44
NPLOC4-210ENST00000572824 LAMC3Q9Y6N6 1575 aa17.77■□□□□ 0.44
NPLOC4-210ENST00000572824 U3KPZ7 1027 aaPredicted RBP17.67■□□□□ 0.42
NPLOC4-210ENST00000572824 RSF1Q96T23 1441 aaPredicted RBP17.62■□□□□ 0.41
NPLOC4-210ENST00000572824 CADPSQ9ULU8 1353 aa17.6■□□□□ 0.41
NPLOC4-210ENST00000572824 PDS5BQ9NTI5 1447 aa17.58■□□□□ 0.41
NPLOC4-210ENST00000572824 TOP2AP11388 1531 aaKnown RBP17.56■□□□□ 0.4
NPLOC4-210ENST00000572824 ATXN8OSP0DMR3 200 aa17.54■□□□□ 0.4
NPLOC4-210ENST00000572824 MRC2Q9UBG0 1479 aa17.54■□□□□ 0.4
NPLOC4-210ENST00000572824 WDR62O43379 1518 aa17.53■□□□□ 0.4
NPLOC4-210ENST00000572824 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.51■□□□□ 0.39
NPLOC4-210ENST00000572824 HNRNPUL2Q1KMD3 747 aaKnown RBP17.51■□□□□ 0.39
NPLOC4-210ENST00000572824 SAMD1Q6SPF0 538 aaPredicted RBP17.47■□□□□ 0.39
NPLOC4-210ENST00000572824 FANCD2Q9BXW9 1451 aa17.47■□□□□ 0.39
NPLOC4-210ENST00000572824 CEP164Q9UPV0 1460 aa17.47■□□□□ 0.39
NPLOC4-210ENST00000572824 CFTRP13569 1480 aa17.45■□□□□ 0.38
NPLOC4-210ENST00000572824 PRDM2Q13029 1718 aa17.42■□□□□ 0.38
NPLOC4-210ENST00000572824 RNF39Q9H2S5 420 aa17.42■□□□□ 0.38
NPLOC4-210ENST00000572824 URB2Q14146 1524 aaKnown RBP17.41■□□□□ 0.38
NPLOC4-210ENST00000572824 CCDC88BA6NC98 1476 aa17.36■□□□□ 0.37
NPLOC4-210ENST00000572824 ATF5Q9Y2D1 282 aaPredicted RBP17.34■□□□□ 0.37
NPLOC4-210ENST00000572824 APLP2Q06481 763 aa17.25■□□□□ 0.35
NPLOC4-210ENST00000572824 C1QBPQ07021 282 aaKnown RBP17.22■□□□□ 0.35
NPLOC4-210ENST00000572824 ZNF608Q9ULD9 1512 aaPredicted RBP17.21■□□□□ 0.34
NPLOC4-210ENST00000572824 TOPBP1Q92547 1522 aa17.18■□□□□ 0.34
NPLOC4-210ENST00000572824 TRIM41Q8WV44 630 aa17.13■□□□□ 0.33
NPLOC4-210ENST00000572824 EIF4G3O43432 1585 aaKnown RBP17.12■□□□□ 0.33
NPLOC4-210ENST00000572824 DNMBPQ6XZF7 1577 aa17.11■□□□□ 0.33
NPLOC4-210ENST00000572824 SPINK5Q9NQ38 1064 aaPredicted RBP17.1■□□□□ 0.33
NPLOC4-210ENST00000572824 IFT140Q96RY7 1462 aa17.08■□□□□ 0.32
NPLOC4-210ENST00000572824 TARBP1Q13395 1621 aaKnown RBP17.07■□□□□ 0.32
NPLOC4-210ENST00000572824 CHD1O14646 1710 aa17.04■□□□□ 0.32
NPLOC4-210ENST00000572824 ZNF219Q9P2Y4 722 aaPredicted RBP17.03■□□□□ 0.32
NPLOC4-210ENST00000572824 POLA1P09884 1462 aaPredicted RBP17.01■□□□□ 0.31
NPLOC4-210ENST00000572824 RAD54L2Q9Y4B4 1467 aa17■□□□□ 0.31
NPLOC4-210ENST00000572824 RIMBP3CA6NJZ7 1639 aa17■□□□□ 0.31
NPLOC4-210ENST00000572824 RIMBP3BA6NNM3 1639 aa17■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 67.1 ms