Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 SLC25A23-203ENST00000334510 1424 ntTSL 1 (best) BASIC30.88■■■□□ 2.53
CCDC88AQ3V6T2 SOCS2-202ENST00000536696 1065 ntAPPRIS P1 TSL 2 BASIC30.87■■■□□ 2.53
CCDC88AQ3V6T2 ZEB1-AS1-205ENST00000605946 382 ntTSL 5 BASIC30.87■■■□□ 2.53
CCDC88AQ3V6T2 NEUROG2-201ENST00000313341 2287 ntAPPRIS P1 TSL 1 (best) BASIC30.87■■■□□ 2.53
CCDC88AQ3V6T2 C16orf95-201ENST00000253461 953 ntAPPRIS P3 TSL 1 (best) BASIC30.87■■■□□ 2.53
CCDC88AQ3V6T2 RP9P-202ENST00000450133 1212 ntBASIC30.87■■■□□ 2.53
CCDC88AQ3V6T2 AC145124.1-201ENST00000528514 1361 ntTSL 2 BASIC30.87■■■□□ 2.53
CCDC88AQ3V6T2 CCDC88C-205ENST00000553403 1651 ntTSL 1 (best) BASIC30.87■■■□□ 2.53
CCDC88AQ3V6T2 FOXP1-201ENST00000318779 843 ntTSL 1 (best) BASIC30.86■■■□□ 2.53
CCDC88AQ3V6T2 FKBP1B-202ENST00000380991 1010 ntTSL 1 (best) BASIC30.85■■■□□ 2.53
CCDC88AQ3V6T2 QDPR-202ENST00000428702 1278 ntTSL 2 BASIC30.85■■■□□ 2.53
CCDC88AQ3V6T2 AMN-201ENST00000299155 1907 ntAPPRIS P2 TSL 1 (best) BASIC30.85■■■□□ 2.53
CCDC88AQ3V6T2 TRAF7-203ENST00000565383 799 ntTSL 5 BASIC30.84■■■□□ 2.53
CCDC88AQ3V6T2 CCND3-205ENST00000415497 1843 ntTSL 2 BASIC30.84■■■□□ 2.53
CCDC88AQ3V6T2 CHKB-AS1-201ENST00000380711 578 ntTSL 2 BASIC30.84■■■□□ 2.53
CCDC88AQ3V6T2 MDK-206ENST00000407067 1026 ntAPPRIS P2 TSL 1 (best) BASIC30.84■■■□□ 2.53
CCDC88AQ3V6T2 PITX3-202ENST00000539804 1187 ntAPPRIS P1 TSL 5 BASIC30.84■■■□□ 2.53
CCDC88AQ3V6T2 BHLHE23-202ENST00000612929 1109 ntBASIC30.84■■■□□ 2.53
CCDC88AQ3V6T2 FHL2-202ENST00000344213 1769 ntTSL 1 (best) BASIC30.84■■■□□ 2.53
CCDC88AQ3V6T2 FAM173A-202ENST00000564000 1088 ntAPPRIS ALT2 TSL 2 BASIC30.83■■■□□ 2.53
CCDC88AQ3V6T2 MIR6765-201ENST00000614092 87 ntBASIC30.83■■■□□ 2.53
CCDC88AQ3V6T2 HAUS7-211ENST00000626181 414 ntAPPRIS ALT2 TSL 5 BASIC30.83■■■□□ 2.53
CCDC88AQ3V6T2 AC027237.3-202ENST00000558617 1778 ntTSL 2 BASIC30.83■■■□□ 2.53
CCDC88AQ3V6T2 HYI-210ENST00000486909 905 ntTSL 5 BASIC30.82■■■□□ 2.53
CCDC88AQ3V6T2 YAP1-204ENST00000526343 2393 ntTSL 5 BASIC30.82■■■□□ 2.52
CCDC88AQ3V6T2 CENPX-202ENST00000392359 805 ntAPPRIS P1 TSL 2 BASIC30.82■■■□□ 2.52
CCDC88AQ3V6T2 OR2A1-AS1-204ENST00000470435 602 ntBASIC30.82■■■□□ 2.52
CCDC88AQ3V6T2 AC008105.2-203ENST00000591361 550 ntTSL 4 BASIC30.82■■■□□ 2.52
CCDC88AQ3V6T2 MRPL4-201ENST00000253099 1455 ntAPPRIS P2 TSL 1 (best) BASIC30.81■■■□□ 2.52
CCDC88AQ3V6T2 EFNA1-202ENST00000368407 1926 ntAPPRIS P1 TSL 1 (best) BASIC30.81■■■□□ 2.52
CCDC88AQ3V6T2 AC103834.1-201ENST00000520383 144 ntBASIC30.81■■■□□ 2.52
CCDC88AQ3V6T2 PKIG-205ENST00000372891 1443 ntAPPRIS P1 TSL 2 BASIC30.81■■■□□ 2.52
CCDC88AQ3V6T2 CIB2-201ENST00000258930 1598 ntAPPRIS P1 TSL 1 (best) BASIC30.81■■■□□ 2.52
CCDC88AQ3V6T2 ARPC2-202ENST00000315717 1505 ntAPPRIS P1 TSL 1 (best) BASIC30.81■■■□□ 2.52
CCDC88AQ3V6T2 MIR935-201ENST00000401179 91 ntBASIC30.8■■■□□ 2.52
CCDC88AQ3V6T2 AC074183.2-201ENST00000623112 922 ntBASIC30.8■■■□□ 2.52
CCDC88AQ3V6T2 TSPY4-202ENST00000426950 1179 ntAPPRIS P5 TSL 5 BASIC30.8■■■□□ 2.52
CCDC88AQ3V6T2 AC138647.1-201ENST00000427937 648 ntAPPRIS P1 TSL 5 BASIC30.8■■■□□ 2.52
CCDC88AQ3V6T2 ST7-202ENST00000323984 2142 ntTSL 5 BASIC30.79■■■□□ 2.52
CCDC88AQ3V6T2 ST7-207ENST00000393449 2127 ntTSL 5 BASIC30.79■■■□□ 2.52
CCDC88AQ3V6T2 SMKR1-201ENST00000462322 1035 ntAPPRIS P1 TSL 1 (best) BASIC30.79■■■□□ 2.52
CCDC88AQ3V6T2 RHOBTB3-206ENST00000506817 1432 ntTSL 2 BASIC30.79■■■□□ 2.52
CCDC88AQ3V6T2 NBPF26-209ENST00000624419 1133 ntTSL 5 BASIC30.78■■■□□ 2.52
CCDC88AQ3V6T2 HOXB3-212ENST00000498678 2196 ntAPPRIS P1 TSL 2 BASIC30.78■■■□□ 2.52
CCDC88AQ3V6T2 AL160276.1-201ENST00000636672 1312 ntAPPRIS P1 TSL 5 BASIC30.78■■■□□ 2.52
CCDC88AQ3V6T2 GATA2-AS1-202ENST00000468377 1578 ntTSL 2 BASIC30.78■■■□□ 2.52
CCDC88AQ3V6T2 HOXB3-202ENST00000460160 1525 ntTSL 5 BASIC30.77■■■□□ 2.52
CCDC88AQ3V6T2 AL354928.1-201ENST00000438380 617 ntTSL 2 BASIC30.77■■■□□ 2.52
CCDC88AQ3V6T2 TNFRSF25-204ENST00000356876 1625 ntAPPRIS ALT2 TSL 1 (best) BASIC30.77■■■□□ 2.52
CCDC88AQ3V6T2 PROCA1-201ENST00000301039 1566 ntTSL 1 (best) BASIC30.77■■■□□ 2.52
CCDC88AQ3V6T2 AP004833.2-201ENST00000532228 1454 ntBASIC30.77■■■□□ 2.52
CCDC88AQ3V6T2 NTHL1-201ENST00000219066 1067 ntAPPRIS P1 TSL 1 (best) BASIC30.76■■■□□ 2.52
CCDC88AQ3V6T2 FAM159A-204ENST00000517870 748 ntAPPRIS P1 TSL 1 (best) BASIC30.76■■■□□ 2.52
CCDC88AQ3V6T2 PKNOX2-AS1-201ENST00000532316 586 ntTSL 3 BASIC30.76■■■□□ 2.52
CCDC88AQ3V6T2 LSM7-203ENST00000585409 512 ntTSL 2 BASIC30.76■■■□□ 2.52
CCDC88AQ3V6T2 FOXQ1-201ENST00000296839 2309 ntAPPRIS P1 BASIC30.76■■■□□ 2.51
CCDC88AQ3V6T2 DCBLD1-201ENST00000296955 1979 ntAPPRIS P2 TSL 1 (best) BASIC30.76■■■□□ 2.51
CCDC88AQ3V6T2 MPP6-203ENST00000409761 1703 ntTSL 5 BASIC30.76■■■□□ 2.51
CCDC88AQ3V6T2 LDLRAD4-218ENST00000592991 1640 ntTSL 1 (best) BASIC30.76■■■□□ 2.51
CCDC88AQ3V6T2 TMEM120A-214ENST00000493111 1456 ntAPPRIS P1 TSL 1 (best) BASIC30.75■■■□□ 2.51
CCDC88AQ3V6T2 PHOX2A-201ENST00000298231 1699 ntAPPRIS P1 TSL 1 (best) BASIC30.75■■■□□ 2.51
CCDC88AQ3V6T2 TMEM170A-202ENST00000561878 1072 ntAPPRIS P1 TSL 1 (best) BASIC30.75■■■□□ 2.51
CCDC88AQ3V6T2 AC009163.4-201ENST00000567194 530 ntAPPRIS P1 TSL 2 BASIC30.75■■■□□ 2.51
CCDC88AQ3V6T2 RBM42-205ENST00000589871 1487 ntTSL 5 BASIC30.75■■■□□ 2.51
CCDC88AQ3V6T2 YBX1P4-201ENST00000392794 808 ntBASIC30.74■■■□□ 2.51
CCDC88AQ3V6T2 RPUSD1-208ENST00000567114 1835 ntTSL 2 BASIC30.74■■■□□ 2.51
CCDC88AQ3V6T2 AC100797.4-201ENST00000631653 1827 ntBASIC30.74■■■□□ 2.51
CCDC88AQ3V6T2 AGAP3-216ENST00000479901 1881 ntTSL 5 BASIC30.74■■■□□ 2.51
CCDC88AQ3V6T2 MSRB1-206ENST00000622125 1363 ntAPPRIS ALT1 TSL 5 BASIC30.73■■■□□ 2.51
CCDC88AQ3V6T2 ARMC10-211ENST00000541300 2266 ntTSL 1 (best) BASIC30.73■■■□□ 2.51
CCDC88AQ3V6T2 ST7-205ENST00000393446 2114 ntTSL 5 BASIC30.73■■■□□ 2.51
CCDC88AQ3V6T2 EPM2A-202ENST00000435470 1278 ntTSL 1 (best) BASIC30.73■■■□□ 2.51
CCDC88AQ3V6T2 TCEA1-214ENST00000640382 1234 ntTSL 5 BASIC30.73■■■□□ 2.51
CCDC88AQ3V6T2 SOWAHD-201ENST00000343905 1552 ntAPPRIS P1 BASIC30.73■■■□□ 2.51
CCDC88AQ3V6T2 FKBP1A-205ENST00000439640 1583 ntTSL 3 BASIC30.73■■■□□ 2.51
CCDC88AQ3V6T2 LMAN2-208ENST00000515209 1149 ntAPPRIS ALT2 TSL 3 BASIC30.72■■■□□ 2.51
CCDC88AQ3V6T2 LINC01233-202ENST00000598832 568 ntTSL 2 BASIC30.72■■■□□ 2.51
CCDC88AQ3V6T2 COQ2-201ENST00000311461 1464 ntAPPRIS ALT2 TSL 5 BASIC30.72■■■□□ 2.51
CCDC88AQ3V6T2 FOXE3-201ENST00000335071 1981 ntAPPRIS P1 BASIC30.72■■■□□ 2.51
CCDC88AQ3V6T2 PRTG-204ENST00000561292 833 ntTSL 3 BASIC30.72■■■□□ 2.51
CCDC88AQ3V6T2 AC064853.4-201ENST00000641394 363 ntAPPRIS P1 BASIC30.72■■■□□ 2.51
CCDC88AQ3V6T2 KDM4C-203ENST00000401787 1406 ntTSL 1 (best) BASIC30.71■■■□□ 2.51
CCDC88AQ3V6T2 ANGPTL6-203ENST00000589181 1579 ntTSL 5 BASIC30.71■■■□□ 2.51
CCDC88AQ3V6T2 ACOT7-201ENST00000361521 2429 ntAPPRIS ALT2 TSL 1 (best) BASIC30.7■■■□□ 2.51
CCDC88AQ3V6T2 C9orf47-202ENST00000375850 859 ntAPPRIS ALT2 TSL 3 BASIC30.7■■■□□ 2.51
CCDC88AQ3V6T2 UBALD1-206ENST00000590965 1462 ntTSL 2 BASIC30.7■■■□□ 2.51
CCDC88AQ3V6T2 FEZF2-202ENST00000475839 1918 ntAPPRIS P1 TSL 1 (best) BASIC30.7■■■□□ 2.5
CCDC88AQ3V6T2 MOSPD3-204ENST00000424091 1115 ntTSL 1 (best) BASIC30.7■■■□□ 2.5
CCDC88AQ3V6T2 HAGHL-205ENST00000561546 1041 ntTSL 2 BASIC30.7■■■□□ 2.5
CCDC88AQ3V6T2 NRXN1-228ENST00000628364 2444 ntTSL 5 BASIC30.69■■■□□ 2.5
CCDC88AQ3V6T2 FGF18-201ENST00000274625 1986 ntAPPRIS P1 TSL 1 (best) BASIC30.69■■■□□ 2.5
CCDC88AQ3V6T2 CAMK2N2-201ENST00000296238 1362 ntAPPRIS P1 TSL 1 (best) BASIC30.69■■■□□ 2.5
CCDC88AQ3V6T2 AC079305.3-201ENST00000455416 218 ntTSL 5 BASIC30.69■■■□□ 2.5
CCDC88AQ3V6T2 AP002893.1-201ENST00000528885 684 ntTSL 2 BASIC30.69■■■□□ 2.5
CCDC88AQ3V6T2 TCEA1-213ENST00000640041 1171 ntTSL 5 BASIC30.69■■■□□ 2.5
CCDC88AQ3V6T2 TXNRD2-205ENST00000400525 1874 ntTSL 5 BASIC30.68■■■□□ 2.5
CCDC88AQ3V6T2 BCAP31-201ENST00000345046 1589 ntAPPRIS P1 TSL 1 (best) BASIC30.68■■■□□ 2.5
CCDC88AQ3V6T2 PYCR1-203ENST00000402252 1346 ntTSL 2 BASIC30.68■■■□□ 2.5
CCDC88AQ3V6T2 PHF20L1-207ENST00000395379 1998 ntTSL 5 BASIC30.68■■■□□ 2.5
CCDC88AQ3V6T2 AL356441.2-201ENST00000443009 864 ntBASIC30.67■■■□□ 2.5
Retrieved 100 of 98,524 protein–RNA pairs in 13.2 ms