Protein–RNA interactions for Protein: P56589

PEX3, Peroxisomal biogenesis factor 3, humanhuman

Predictions only

Length 373 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PEX3P56589 C12orf75-201ENST00000443585 1366 ntAPPRIS P1 TSL 2 BASIC27.4■■□□□ 1.98
PEX3P56589 SHF-208ENST00000560734 1731 ntTSL 3 BASIC27.4■■□□□ 1.98
PEX3P56589 HAND2-201ENST00000359562 2780 ntAPPRIS P1 TSL 1 (best) BASIC27.4■■□□□ 1.98
PEX3P56589 GATA2-AS1-202ENST00000468377 1578 ntTSL 2 BASIC27.39■■□□□ 1.98
PEX3P56589 UCK1-204ENST00000372215 2167 ntAPPRIS P1 TSL 1 (best) BASIC27.39■■□□□ 1.98
PEX3P56589 RTN2-202ENST00000344680 2063 ntAPPRIS P1 TSL 1 (best) BASIC27.39■■□□□ 1.98
PEX3P56589 NME2-205ENST00000512737 826 ntAPPRIS P1 TSL 1 (best) BASIC27.39■■□□□ 1.98
PEX3P56589 MXRA7-202ENST00000375036 1950 ntAPPRIS ALT2 TSL 2 BASIC27.39■■□□□ 1.97
PEX3P56589 AL449106.1-201ENST00000608517 1980 ntBASIC27.38■■□□□ 1.97
PEX3P56589 ZIC2-201ENST00000376335 2983 ntAPPRIS P1 TSL 1 (best) BASIC27.37■■□□□ 1.97
PEX3P56589 CTSA-203ENST00000372459 1972 ntTSL 1 (best) BASIC27.37■■□□□ 1.97
PEX3P56589 ABHD12-202ENST00000376542 1725 ntTSL 1 (best) BASIC27.37■■□□□ 1.97
PEX3P56589 PTPRF-216ENST00000617451 1129 ntTSL 5 BASIC27.37■■□□□ 1.97
PEX3P56589 AC068134.2-201ENST00000437095 576 ntTSL 3 BASIC27.36■■□□□ 1.97
PEX3P56589 PSMG1-201ENST00000331573 2154 ntAPPRIS P1 TSL 1 (best) BASIC27.36■■□□□ 1.97
PEX3P56589 PDK1-202ENST00000392571 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC27.36■■□□□ 1.97
PEX3P56589 HOXB3-201ENST00000311626 2642 ntAPPRIS P1 TSL 1 (best) BASIC27.36■■□□□ 1.97
PEX3P56589 PPAN-202ENST00000393793 1575 ntTSL 5 BASIC27.35■■□□□ 1.97
PEX3P56589 CAPNS1-204ENST00000587718 1558 ntAPPRIS ALT2 TSL 1 (best) BASIC27.35■■□□□ 1.97
PEX3P56589 MCCD1-201ENST00000376191 955 ntAPPRIS P1 TSL 1 (best) BASIC27.35■■□□□ 1.97
PEX3P56589 AC092296.2-201ENST00000589470 999 ntBASIC27.35■■□□□ 1.97
PEX3P56589 MIR1-1HG-202ENST00000624914 1220 ntTSL 1 (best) BASIC27.35■■□□□ 1.97
PEX3P56589 VSIG8-201ENST00000368100 1818 ntAPPRIS P1 TSL 1 (best) BASIC27.34■■□□□ 1.97
PEX3P56589 LDLRAD3-203ENST00000528989 1879 ntTSL 1 (best) BASIC27.34■■□□□ 1.97
PEX3P56589 FGF20-201ENST00000180166 1688 ntAPPRIS P1 TSL 1 (best) BASIC27.34■■□□□ 1.97
PEX3P56589 AL157400.5-201ENST00000507624 621 ntBASIC27.34■■□□□ 1.97
PEX3P56589 MOB2-207ENST00000614710 705 ntTSL 5 BASIC27.34■■□□□ 1.97
PEX3P56589 RCC1L-201ENST00000610322 2300 ntAPPRIS P1 TSL 1 (best) BASIC27.34■■□□□ 1.97
PEX3P56589 PQLC3-201ENST00000295083 1830 ntAPPRIS P1 TSL 1 (best) BASIC27.33■■□□□ 1.97
PEX3P56589 BRD4-212ENST00000630599 726 ntTSL 2 BASIC27.33■■□□□ 1.97
PEX3P56589 PROCA1-201ENST00000301039 1566 ntTSL 1 (best) BASIC27.33■■□□□ 1.97
PEX3P56589 FAM78B-201ENST00000338353 1597 ntAPPRIS P1 TSL 1 (best) BASIC27.33■■□□□ 1.97
PEX3P56589 HDGFL1-201ENST00000510882 2174 ntAPPRIS P1 BASIC27.32■■□□□ 1.96
PEX3P56589 RPRML-201ENST00000322329 1093 ntAPPRIS P1 BASIC27.32■■□□□ 1.96
PEX3P56589 RNF126P1-201ENST00000567452 1320 ntBASIC27.32■■□□□ 1.96
PEX3P56589 CRTAP-202ENST00000449224 1811 ntAPPRIS ALT2 TSL 2 BASIC27.32■■□□□ 1.96
PEX3P56589 PWWP2B-201ENST00000305233 2651 ntAPPRIS P1 TSL 1 (best) BASIC27.32■■□□□ 1.96
PEX3P56589 TIGD3-201ENST00000309880 2012 ntAPPRIS P1 TSL 2 BASIC27.31■■□□□ 1.96
PEX3P56589 HES4-202ENST00000428771 1040 ntTSL 2 BASIC27.31■■□□□ 1.96
PEX3P56589 RPL27A-206ENST00000530022 878 ntTSL 1 (best) BASIC27.3■■□□□ 1.96
PEX3P56589 TIMM29-201ENST00000270502 1425 ntAPPRIS P1 TSL 1 (best) BASIC27.3■■□□□ 1.96
PEX3P56589 SLC25A6-201ENST00000381401 2062 ntAPPRIS P1 TSL 1 (best) BASIC27.29■■□□□ 1.96
PEX3P56589 CARM1-202ENST00000344150 2722 ntAPPRIS ALT2 TSL 5 BASIC27.29■■□□□ 1.96
PEX3P56589 ADAMTSL5-202ENST00000395467 1533 ntTSL 5 BASIC27.28■■□□□ 1.96
PEX3P56589 GNG10-201ENST00000374293 1491 ntAPPRIS P1 TSL 1 (best) BASIC27.27■■□□□ 1.96
PEX3P56589 CPTP-201ENST00000343938 2190 ntAPPRIS P1 TSL 2 BASIC27.27■■□□□ 1.96
PEX3P56589 NDEL1-202ENST00000380025 2181 ntTSL 5 BASIC27.27■■□□□ 1.96
PEX3P56589 LTC4S-205ENST00000486713 496 ntTSL 2 BASIC27.27■■□□□ 1.96
PEX3P56589 TNIP2-201ENST00000315423 1974 ntAPPRIS P3 TSL 1 (best) BASIC27.27■■□□□ 1.96
PEX3P56589 IHH-201ENST00000295731 2023 ntAPPRIS P1 TSL 1 (best) BASIC27.26■■□□□ 1.95
PEX3P56589 ARPC5L-202ENST00000353214 2507 ntAPPRIS P1 TSL 2 BASIC27.26■■□□□ 1.95
PEX3P56589 ZDHHC3-203ENST00000342790 1336 ntTSL 5 BASIC27.26■■□□□ 1.95
PEX3P56589 RARRES2P2-201ENST00000394842 485 ntBASIC27.26■■□□□ 1.95
PEX3P56589 ECEL1P2-201ENST00000461596 1295 ntBASIC27.26■■□□□ 1.95
PEX3P56589 KAZN-207ENST00000503743 1475 ntTSL 1 (best) BASIC27.25■■□□□ 1.95
PEX3P56589 MDFIC-208ENST00000614186 1068 ntTSL 1 (best) BASIC27.25■■□□□ 1.95
PEX3P56589 RNF175-201ENST00000347063 1604 ntAPPRIS P1 TSL 1 (best) BASIC27.25■■□□□ 1.95
PEX3P56589 PIK3R2-207ENST00000617130 2187 ntAPPRIS P1 TSL 1 (best) BASIC27.25■■□□□ 1.95
PEX3P56589 FOXO6-202ENST00000641094 1476 ntAPPRIS P1 BASIC27.25■■□□□ 1.95
PEX3P56589 CDPF1-201ENST00000314567 1875 ntAPPRIS P2 TSL 1 (best) BASIC27.24■■□□□ 1.95
PEX3P56589 UPF3A-209ENST00000492270 494 ntTSL 2 BASIC27.24■■□□□ 1.95
PEX3P56589 PTGER1-201ENST00000292513 1421 ntAPPRIS P1 TSL 1 (best) BASIC27.24■■□□□ 1.95
PEX3P56589 CABP1-202ENST00000316803 1658 ntTSL 1 (best) BASIC27.24■■□□□ 1.95
PEX3P56589 AL359504.2-201ENST00000605506 1601 ntBASIC27.23■■□□□ 1.95
PEX3P56589 TTC36-201ENST00000302783 874 ntAPPRIS P1 TSL 1 (best) BASIC27.23■■□□□ 1.95
PEX3P56589 C11orf80-210ENST00000527634 1666 ntAPPRIS ALT2 TSL 5 BASIC27.23■■□□□ 1.95
PEX3P56589 RHBDD2-202ENST00000318622 1878 ntTSL 2 BASIC27.23■■□□□ 1.95
PEX3P56589 CLK2-203ENST00000368361 2166 ntAPPRIS ALT1 TSL 1 (best) BASIC27.22■■□□□ 1.95
PEX3P56589 RAB3IL1-202ENST00000394836 2284 ntAPPRIS P1 TSL 1 (best) BASIC27.22■■□□□ 1.95
PEX3P56589 PXMP2-201ENST00000317479 957 ntAPPRIS P1 TSL 1 (best) BASIC27.22■■□□□ 1.95
PEX3P56589 AC007383.2-202ENST00000435627 482 ntTSL 2 BASIC27.22■■□□□ 1.95
PEX3P56589 ZNF653-201ENST00000293771 2240 ntAPPRIS P1 TSL 1 (best) BASIC27.22■■□□□ 1.95
PEX3P56589 DHRS13-202ENST00000394901 2037 ntTSL 1 (best) BASIC27.22■■□□□ 1.95
PEX3P56589 PHYH-201ENST00000263038 1577 ntAPPRIS P1 TSL 1 (best) BASIC27.22■■□□□ 1.95
PEX3P56589 CCDC136-206ENST00000464832 1720 ntAPPRIS ALT2 TSL 5 BASIC27.21■■□□□ 1.95
PEX3P56589 CAMK1D-203ENST00000615792 1725 ntTSL 5 BASIC27.21■■□□□ 1.95
PEX3P56589 FAM66E-202ENST00000533615 2087 ntTSL 2 BASIC27.21■■□□□ 1.95
PEX3P56589 PLEKHJ1-204ENST00000586608 935 ntTSL 3 BASIC27.21■■□□□ 1.95
PEX3P56589 TANGO2-214ENST00000447208 2086 ntTSL 3 BASIC27.21■■□□□ 1.95
PEX3P56589 PLSCR3-214ENST00000619711 2066 ntTSL 5 BASIC27.21■■□□□ 1.95
PEX3P56589 UNCX-201ENST00000316333 2048 ntAPPRIS P1 TSL 1 (best) BASIC27.21■■□□□ 1.95
PEX3P56589 PBX1-202ENST00000367897 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC27.2■■□□□ 1.95
PEX3P56589 C9orf40-201ENST00000376854 2327 ntAPPRIS P1 TSL 1 (best) BASIC27.2■■□□□ 1.94
PEX3P56589 CCND3-205ENST00000415497 1843 ntTSL 2 BASIC27.2■■□□□ 1.94
PEX3P56589 SLC35A2-207ENST00000445167 1739 ntTSL 1 (best) BASIC27.19■■□□□ 1.94
PEX3P56589 FGF13-AS1-202ENST00000446383 584 ntTSL 3 BASIC27.19■■□□□ 1.94
PEX3P56589 NR6A1-203ENST00000416460 1898 ntAPPRIS ALT2 TSL 1 (best) BASIC27.19■■□□□ 1.94
PEX3P56589 DACT2-202ENST00000366796 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC27.18■■□□□ 1.94
PEX3P56589 NRARP-201ENST00000356628 1770 ntAPPRIS P1 BASIC27.18■■□□□ 1.94
PEX3P56589 TCFL5-201ENST00000217162 2453 ntAPPRIS ALT2 TSL 1 (best) BASIC27.18■■□□□ 1.94
PEX3P56589 TCFL5-202ENST00000335351 2456 ntAPPRIS P2 TSL 1 (best) BASIC27.18■■□□□ 1.94
PEX3P56589 SMPD5-203ENST00000639008 1464 ntBASIC27.18■■□□□ 1.94
PEX3P56589 DNAJC21-201ENST00000342382 2309 ntAPPRIS P1 TSL 1 (best) BASIC27.17■■□□□ 1.94
PEX3P56589 RAD51-208ENST00000532743 1515 ntTSL 2 BASIC27.17■■□□□ 1.94
PEX3P56589 TNFRSF4-201ENST00000379236 1068 ntAPPRIS P1 TSL 1 (best) BASIC27.17■■□□□ 1.94
PEX3P56589 RAD51-210ENST00000557850 1397 ntTSL 2 BASIC27.17■■□□□ 1.94
PEX3P56589 THRA-204ENST00000546243 1909 ntAPPRIS P1 TSL 2 BASIC27.16■■□□□ 1.94
PEX3P56589 ARHGEF7-206ENST00000375741 5525 ntTSL 1 (best) BASIC27.16■■□□□ 1.94
PEX3P56589 ARL6IP4-208ENST00000439686 796 ntAPPRIS ALT2 TSL 3 BASIC27.16■■□□□ 1.94
PEX3P56589 AC025884.2-201ENST00000553429 711 ntBASIC27.16■■□□□ 1.94
Retrieved 100 of 98,524 protein–RNA pairs in 26.8 ms