Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 ARL6IP4-208ENST00000439686 796 ntAPPRIS ALT2 TSL 3 BASIC26.24■■□□□ 1.79
BDNFP23560 C16orf95-206ENST00000618367 974 ntAPPRIS ALT2 TSL 2 BASIC26.24■■□□□ 1.79
BDNFP23560 TIMM29-201ENST00000270502 1425 ntAPPRIS P1 TSL 1 (best) BASIC26.23■■□□□ 1.79
BDNFP23560 TTC36-201ENST00000302783 874 ntAPPRIS P1 TSL 1 (best) BASIC26.23■■□□□ 1.79
BDNFP23560 FCGRT-217ENST00000599988 660 ntTSL 5 BASIC26.23■■□□□ 1.79
BDNFP23560 GADD45A-205ENST00000617962 1142 ntTSL 1 (best) BASIC26.23■■□□□ 1.79
BDNFP23560 ZNF639-209ENST00000496856 2033 ntAPPRIS P1 TSL 1 (best) BASIC26.22■■□□□ 1.79
BDNFP23560 AC142086.6-201ENST00000621154 1765 ntBASIC26.22■■□□□ 1.79
BDNFP23560 REXO4-201ENST00000371935 1899 ntTSL 3 BASIC26.21■■□□□ 1.79
BDNFP23560 PQLC3-201ENST00000295083 1830 ntAPPRIS P1 TSL 1 (best) BASIC26.21■■□□□ 1.79
BDNFP23560 HYI-213ENST00000583037 1322 ntTSL 5 BASIC26.21■■□□□ 1.79
BDNFP23560 TSPOAP1-AS1-203ENST00000579527 2042 ntTSL 2 BASIC26.21■■□□□ 1.79
BDNFP23560 LOR-201ENST00000368742 1230 ntAPPRIS P1 TSL 1 (best) BASIC26.21■■□□□ 1.79
BDNFP23560 ENDOG-201ENST00000372642 1172 ntAPPRIS P1 TSL 1 (best) BASIC26.21■■□□□ 1.79
BDNFP23560 ELOC-207ENST00000522337 816 ntAPPRIS P1 TSL 2 BASIC26.21■■□□□ 1.79
BDNFP23560 ANKRD65-205ENST00000537107 2190 ntAPPRIS P1 TSL 5 BASIC26.21■■□□□ 1.79
BDNFP23560 FZD2-201ENST00000315323 2112 ntAPPRIS P1 BASIC26.21■■□□□ 1.79
BDNFP23560 MFSD12-201ENST00000355415 2124 ntAPPRIS P3 TSL 1 (best) BASIC26.2■■□□□ 1.79
BDNFP23560 SMPD5-203ENST00000639008 1464 ntBASIC26.2■■□□□ 1.78
BDNFP23560 HYAL2-202ENST00000395139 2136 ntAPPRIS P1 TSL 1 (best) BASIC26.19■■□□□ 1.78
BDNFP23560 BTBD19-201ENST00000409335 1214 ntTSL 5 BASIC26.19■■□□□ 1.78
BDNFP23560 PTCH1-210ENST00000468211 1254 ntTSL 1 (best) BASIC26.19■■□□□ 1.78
BDNFP23560 PDK1-202ENST00000392571 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC26.19■■□□□ 1.78
BDNFP23560 CCND3-205ENST00000415497 1843 ntTSL 2 BASIC26.18■■□□□ 1.78
BDNFP23560 ABHD12-202ENST00000376542 1725 ntTSL 1 (best) BASIC26.18■■□□□ 1.78
BDNFP23560 BMP7-204ENST00000450594 1857 ntTSL 2 BASIC26.18■■□□□ 1.78
BDNFP23560 OPRD1-202ENST00000621425 1217 ntTSL 1 (best) BASIC26.18■■□□□ 1.78
BDNFP23560 RAD51-208ENST00000532743 1515 ntTSL 2 BASIC26.18■■□□□ 1.78
BDNFP23560 CAPNS1-215ENST00000628018 1509 ntAPPRIS ALT2 TSL 5 BASIC26.18■■□□□ 1.78
BDNFP23560 REST-210ENST00000638187 1334 ntTSL 5 BASIC26.17■■□□□ 1.78
BDNFP23560 LDLRAD3-203ENST00000528989 1879 ntTSL 1 (best) BASIC26.17■■□□□ 1.78
BDNFP23560 BX255925.1-201ENST00000566954 1854 ntBASIC26.17■■□□□ 1.78
BDNFP23560 PXMP2-205ENST00000543589 632 ntTSL 3 BASIC26.17■■□□□ 1.78
BDNFP23560 C16orf52-207ENST00000569656 1257 ntTSL 5 BASIC26.17■■□□□ 1.78
BDNFP23560 NTF6A-201ENST00000591175 560 ntBASIC26.17■■□□□ 1.78
BDNFP23560 U85056.1-201ENST00000616429 682 ntBASIC26.17■■□□□ 1.78
BDNFP23560 MAPKAPK2-201ENST00000294981 2171 ntTSL 1 (best) BASIC26.17■■□□□ 1.78
BDNFP23560 PXDC1-202ENST00000380283 2190 ntAPPRIS P1 TSL 1 (best) BASIC26.17■■□□□ 1.78
BDNFP23560 ANKRD53-203ENST00000441349 1797 ntTSL 5 BASIC26.17■■□□□ 1.78
BDNFP23560 PPAN-202ENST00000393793 1575 ntTSL 5 BASIC26.16■■□□□ 1.78
BDNFP23560 SHOX2-201ENST00000389589 2072 ntAPPRIS P3 TSL 1 (best) BASIC26.16■■□□□ 1.78
BDNFP23560 FLVCR1-AS1-203ENST00000426161 892 ntTSL 1 (best) BASIC26.16■■□□□ 1.78
BDNFP23560 AC007029.1-201ENST00000604183 313 ntBASIC26.16■■□□□ 1.78
BDNFP23560 HDHD5-202ENST00000336737 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC26.15■■□□□ 1.78
BDNFP23560 AC025884.2-201ENST00000553429 711 ntBASIC26.15■■□□□ 1.78
BDNFP23560 AC009690.3-201ENST00000569547 1902 ntAPPRIS P1 TSL 2 BASIC26.15■■□□□ 1.78
BDNFP23560 C8orf58-202ENST00000409586 2021 ntAPPRIS ALT2 TSL 2 BASIC26.15■■□□□ 1.78
BDNFP23560 VIPR2-204ENST00000421760 717 ntTSL 3 BASIC26.14■■□□□ 1.78
BDNFP23560 EFEMP2-201ENST00000307998 2034 ntAPPRIS P1 TSL 1 (best) BASIC26.14■■□□□ 1.77
BDNFP23560 NKIRAS2-208ENST00000462043 585 ntTSL 4 BASIC26.13■■□□□ 1.77
BDNFP23560 C14orf80-205ENST00000392523 1845 ntAPPRIS ALT2 TSL 1 (best) BASIC26.13■■□□□ 1.77
BDNFP23560 AL359504.2-201ENST00000605506 1601 ntBASIC26.13■■□□□ 1.77
BDNFP23560 PHYH-201ENST00000263038 1577 ntAPPRIS P1 TSL 1 (best) BASIC26.12■■□□□ 1.77
BDNFP23560 PBX1-202ENST00000367897 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC26.12■■□□□ 1.77
BDNFP23560 ZMYND19-201ENST00000298585 1375 ntAPPRIS P1 TSL 1 (best) BASIC26.12■■□□□ 1.77
BDNFP23560 AL590677.1-201ENST00000438431 380 ntTSL 5 BASIC26.12■■□□□ 1.77
BDNFP23560 MDFIC-206ENST00000448022 484 ntTSL 2 BASIC26.12■■□□□ 1.77
BDNFP23560 MEN1-204ENST00000377313 1871 ntAPPRIS P3 TSL 2 BASIC26.12■■□□□ 1.77
BDNFP23560 AL449106.1-201ENST00000608517 1980 ntBASIC26.11■■□□□ 1.77
BDNFP23560 ADAMTSL5-202ENST00000395467 1533 ntTSL 5 BASIC26.11■■□□□ 1.77
BDNFP23560 TRIM52-AS1-202ENST00000507434 672 ntTSL 1 (best) BASIC26.11■■□□□ 1.77
BDNFP23560 CLEC11A-201ENST00000250340 1419 ntAPPRIS P1 TSL 1 (best) BASIC26.11■■□□□ 1.77
BDNFP23560 BBC3-204ENST00000449228 1827 ntTSL 1 (best) BASIC26.09■■□□□ 1.77
BDNFP23560 C19orf12-207ENST00000592153 1504 ntTSL 1 (best) BASIC26.09■■□□□ 1.77
BDNFP23560 CDKN3-202ENST00000335183 893 ntAPPRIS P2 TSL 1 (best) BASIC26.08■■□□□ 1.77
BDNFP23560 AC005540.1-201ENST00000413911 919 ntTSL 3 BASIC26.08■■□□□ 1.77
BDNFP23560 CDKN3-211ENST00000611205 874 ntAPPRIS ALT2 TSL 5 BASIC26.08■■□□□ 1.77
BDNFP23560 KAZN-207ENST00000503743 1475 ntTSL 1 (best) BASIC26.08■■□□□ 1.77
BDNFP23560 CABP1-202ENST00000316803 1658 ntTSL 1 (best) BASIC26.08■■□□□ 1.77
BDNFP23560 WBP1-202ENST00000393972 1325 ntTSL 2 BASIC26.08■■□□□ 1.77
BDNFP23560 TMEM9-201ENST00000367330 1959 ntAPPRIS P3 TSL 1 (best) BASIC26.07■■□□□ 1.76
BDNFP23560 SAP25-204ENST00000622764 1031 ntAPPRIS ALT2 TSL 5 BASIC26.07■■□□□ 1.76
BDNFP23560 CRTAP-202ENST00000449224 1811 ntAPPRIS ALT2 TSL 2 BASIC26.07■■□□□ 1.76
BDNFP23560 MANF-204ENST00000528157 1153 ntAPPRIS P1 TSL 1 (best) BASIC26.06■■□□□ 1.76
BDNFP23560 TYMP-201ENST00000252029 1630 ntAPPRIS P3 TSL 1 (best) BASIC26.06■■□□□ 1.76
BDNFP23560 DEXI-202ENST00000469379 1393 ntAPPRIS P1 TSL 2 BASIC26.06■■□□□ 1.76
BDNFP23560 SLC9A3-AS1-207ENST00000607286 1357 ntTSL 5 BASIC26.06■■□□□ 1.76
BDNFP23560 PKIG-205ENST00000372891 1443 ntAPPRIS P1 TSL 2 BASIC26.05■■□□□ 1.76
BDNFP23560 PQLC3-204ENST00000441908 1784 ntTSL 2 BASIC26.05■■□□□ 1.76
BDNFP23560 APLP1-201ENST00000221891 2495 ntAPPRIS P1 TSL 1 (best) BASIC26.05■■□□□ 1.76
BDNFP23560 MAPK3-203ENST00000395199 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC26.05■■□□□ 1.76
BDNFP23560 RP9P-202ENST00000450133 1212 ntBASIC26.05■■□□□ 1.76
BDNFP23560 PFN2-211ENST00000489155 636 ntTSL 4 BASIC26.05■■□□□ 1.76
BDNFP23560 KCTD5-202ENST00000564195 774 ntTSL 5 BASIC26.05■■□□□ 1.76
BDNFP23560 CDPF1-201ENST00000314567 1875 ntAPPRIS P2 TSL 1 (best) BASIC26.04■■□□□ 1.76
BDNFP23560 POTEF-201ENST00000361163 1586 ntTSL 5 BASIC26.04■■□□□ 1.76
BDNFP23560 AC009831.1-201ENST00000580420 1582 ntBASIC26.04■■□□□ 1.76
BDNFP23560 VSIG8-201ENST00000368100 1818 ntAPPRIS P1 TSL 1 (best) BASIC26.04■■□□□ 1.76
BDNFP23560 SCCPDH-201ENST00000366510 2503 ntAPPRIS P1 TSL 1 (best) BASIC26.04■■□□□ 1.76
BDNFP23560 VEGFA-209ENST00000425836 1575 ntAPPRIS ALT2 TSL 1 (best) BASIC26.03■■□□□ 1.76
BDNFP23560 CAMK1D-203ENST00000615792 1725 ntTSL 5 BASIC26.03■■□□□ 1.76
BDNFP23560 AC107214.1-201ENST00000457303 559 ntTSL 1 (best) BASIC26.03■■□□□ 1.76
BDNFP23560 UBE2D2-205ENST00000505548 1113 ntTSL 1 (best) BASIC26.03■■□□□ 1.76
BDNFP23560 AC133552.2-201ENST00000619106 1032 ntBASIC26.03■■□□□ 1.76
BDNFP23560 PLEKHF1-201ENST00000436066 2084 ntAPPRIS P1 TSL 1 (best) BASIC26.02■■□□□ 1.76
BDNFP23560 KRT18P60-201ENST00000312876 1297 ntBASIC26.02■■□□□ 1.76
BDNFP23560 MXD3-208ENST00000513063 861 ntAPPRIS P1 TSL 5 BASIC26.02■■□□□ 1.76
BDNFP23560 AC093536.1-201ENST00000569153 554 ntBASIC26.02■■□□□ 1.76
BDNFP23560 MIR3960-201ENST00000583311 91 ntBASIC26.02■■□□□ 1.76
BDNFP23560 AC026202.3-201ENST00000600805 1127 ntBASIC26.02■■□□□ 1.76
Retrieved 100 of 98,524 protein–RNA pairs in 28 ms