Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 ITPK1-202ENST00000354313 2803 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
PDLIM3Q53GG5 NOV-201ENST00000259526 2522 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
PDLIM3Q53GG5 ATRIP-202ENST00000346691 2509 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
PDLIM3Q53GG5 DAB2IP-205ENST00000408936 6784 ntAPPRIS ALT2 TSL 5 BASIC15.12■□□□□ 0.01
PDLIM3Q53GG5 NOP9-202ENST00000396802 1942 ntTSL 5 BASIC15.12■□□□□ 0.01
PDLIM3Q53GG5 HSCB-201ENST00000216027 1114 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
PDLIM3Q53GG5 BCL2L10-201ENST00000260442 1249 ntAPPRIS P3 TSL 1 (best) BASIC15.12■□□□□ 0.01
PDLIM3Q53GG5 LCE3C-201ENST00000333881 425 ntAPPRIS P1 BASIC15.12■□□□□ 0.01
PDLIM3Q53GG5 PSMA7-203ENST00000370873 996 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
PDLIM3Q53GG5 TTC22-201ENST00000371274 2149 ntTSL 2 BASIC15.12■□□□□ 0.01
PDLIM3Q53GG5 SUMF2-203ENST00000395435 1287 ntTSL 2 BASIC15.12■□□□□ 0.01
PDLIM3Q53GG5 PCED1CP-201ENST00000419887 785 ntBASIC15.12■□□□□ 0.01
PDLIM3Q53GG5 PVRIG2P-201ENST00000435460 978 ntBASIC15.12■□□□□ 0.01
PDLIM3Q53GG5 AC068831.2-201ENST00000448987 367 ntTSL 2 BASIC15.12■□□□□ 0.01
PDLIM3Q53GG5 CDKN2AIPNL-202ENST00000458198 1223 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
PDLIM3Q53GG5 AC051649.1-201ENST00000509204 330 ntTSL 3 BASIC15.12■□□□□ 0.01
PDLIM3Q53GG5 CALM1-205ENST00000553542 877 ntTSL 5 BASIC15.12■□□□□ 0.01
PDLIM3Q53GG5 AC100839.1-201ENST00000559589 577 ntTSL 4 BASIC15.12■□□□□ 0.01
PDLIM3Q53GG5 AC004263.2-201ENST00000617183 678 ntBASIC15.12■□□□□ 0.01
PDLIM3Q53GG5 AC022916.1-201ENST00000590478 2658 ntTSL 2 BASIC15.12■□□□□ 0.01
PDLIM3Q53GG5 CCDC157-201ENST00000338306 3001 ntAPPRIS P3 TSL 5 BASIC15.12■□□□□ 0.01
PDLIM3Q53GG5 FN3KRP-201ENST00000269373 1849 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
PDLIM3Q53GG5 PODNL1-203ENST00000538371 1826 ntAPPRIS ALT2 TSL 2 BASIC15.12■□□□□ 0.01
PDLIM3Q53GG5 EGFL6-201ENST00000361306 2398 ntAPPRIS P3 TSL 1 (best) BASIC15.12■□□□□ 0.01
PDLIM3Q53GG5 MGARP-201ENST00000398955 1339 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
PDLIM3Q53GG5 COMMD7-202ENST00000446419 1343 ntAPPRIS ALT1 TSL 2 BASIC15.12■□□□□ 0.01
PDLIM3Q53GG5 SYTL1-208ENST00000543823 2229 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
PDLIM3Q53GG5 SPNS1-204ENST00000352260 1948 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
PDLIM3Q53GG5 NR4A2-204ENST00000409572 2878 ntAPPRIS P1 TSL 5 BASIC15.11■□□□□ 0.01
PDLIM3Q53GG5 SCD5-201ENST00000273908 1995 ntTSL 2 BASIC15.11■□□□□ 0.01
PDLIM3Q53GG5 CRMP1-202ENST00000397890 2911 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
PDLIM3Q53GG5 PTN-201ENST00000348225 1614 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
PDLIM3Q53GG5 SLC35A3-217ENST00000639807 2767 ntTSL 5 BASIC15.11■□□□□ 0.01
PDLIM3Q53GG5 SH3RF1-201ENST00000284637 5272 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
PDLIM3Q53GG5 PTK6-201ENST00000217185 2401 ntTSL 2 BASIC15.11■□□□□ 0.01
PDLIM3Q53GG5 TMEM42-201ENST00000302392 1026 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
PDLIM3Q53GG5 AGTRAP-201ENST00000314340 1107 ntAPPRIS P3 TSL 1 (best) BASIC15.11■□□□□ 0.01
PDLIM3Q53GG5 SLC25A48-202ENST00000412661 1148 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
PDLIM3Q53GG5 AC246785.2-201ENST00000432512 513 ntBASIC15.11■□□□□ 0.01
PDLIM3Q53GG5 SLC25A48-204ENST00000433282 1111 ntAPPRIS P1 TSL 5 BASIC15.11■□□□□ 0.01
PDLIM3Q53GG5 NECTIN3-AS1-204ENST00000476301 568 ntTSL 4 BASIC15.11■□□□□ 0.01
PDLIM3Q53GG5 AC128688.1-201ENST00000487626 519 ntBASIC15.11■□□□□ 0.01
PDLIM3Q53GG5 HRASLS5-205ENST00000539221 1167 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
PDLIM3Q53GG5 TGIF1-222ENST00000577543 729 ntTSL 3 BASIC15.11■□□□□ 0.01
PDLIM3Q53GG5 CYB561-214ENST00000582034 1193 ntTSL 2 BASIC15.11■□□□□ 0.01
PDLIM3Q53GG5 CIRBP-217ENST00000588230 1013 ntTSL 5 BASIC15.11■□□□□ 0.01
PDLIM3Q53GG5 AL807752.6-202ENST00000622933 765 ntAPPRIS P5 TSL 3 BASIC15.11■□□□□ 0.01
PDLIM3Q53GG5 DISP3-202ENST00000304391 1495 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
PDLIM3Q53GG5 TNFSF9-201ENST00000245817 1665 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
PDLIM3Q53GG5 OPA3-202ENST00000323060 2250 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
PDLIM3Q53GG5 CMIP-209ENST00000566513 2288 ntTSL 5 BASIC15.11■□□□□ 0.01
PDLIM3Q53GG5 PRX-202ENST00000324001 4855 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
PDLIM3Q53GG5 MAP6-201ENST00000304771 3334 ntAPPRIS P3 TSL 1 (best) BASIC15.11■□□□□ 0.01
PDLIM3Q53GG5 SOST-201ENST00000301691 2300 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
PDLIM3Q53GG5 PLEKHA2-206ENST00000521746 2127 ntTSL 5 BASIC15.11■□□□□ 0.01
PDLIM3Q53GG5 GTF2H4-201ENST00000259895 1735 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
PDLIM3Q53GG5 FDXR-203ENST00000420580 1705 ntTSL 2 BASIC15.11■□□□□ 0.01
PDLIM3Q53GG5 KRT8P41-201ENST00000533985 1514 ntBASIC15.11■□□□□ 0.01
PDLIM3Q53GG5 FKBP3-202ENST00000396062 1346 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
PDLIM3Q53GG5 AC008969.1-201ENST00000550135 6438 ntTSL 2 BASIC15.11■□□□□ 0.01
PDLIM3Q53GG5 VIPR1-201ENST00000325123 2773 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
PDLIM3Q53GG5 NRXN1-204ENST00000401669 5870 ntAPPRIS ALT1 TSL 5 BASIC15.11■□□□□ 0.01
PDLIM3Q53GG5 PLXNB3-201ENST00000361971 6146 ntAPPRIS P3 TSL 1 (best) BASIC15.11■□□□□ 0.01
PDLIM3Q53GG5 PRAG1-201ENST00000615670 4903 ntAPPRIS P1 TSL 5 BASIC15.11■□□□□ 0.01
PDLIM3Q53GG5 SDC2-202ENST00000518385 1583 ntTSL 5 BASIC15.11■□□□□ 0.01
PDLIM3Q53GG5 IER3-202ENST00000376377 1350 ntBASIC15.11■□□□□ 0.01
PDLIM3Q53GG5 KDM1A-202ENST00000400181 3059 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
PDLIM3Q53GG5 DNLZ-202ENST00000371739 2934 ntTSL 5 BASIC15.1■□□□□ 0.01
PDLIM3Q53GG5 BEGAIN-211ENST00000637646 2911 ntTSL 5 BASIC15.1■□□□□ 0.01
PDLIM3Q53GG5 ADORA2A-213ENST00000610595 2736 ntAPPRIS P1 TSL 2 BASIC15.1■□□□□ 0.01
PDLIM3Q53GG5 POLR2C-201ENST00000219252 2057 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
PDLIM3Q53GG5 CTNNBL1-204ENST00000405275 2076 ntTSL 5 BASIC15.1■□□□□ 0.01
PDLIM3Q53GG5 AP005717.1-201ENST00000500705 1899 ntTSL 5 BASIC15.1■□□□□ 0.01
PDLIM3Q53GG5 PKMYT1-203ENST00000431515 2308 ntTSL 2 BASIC15.1■□□□□ 0.01
PDLIM3Q53GG5 KCNC4-203ENST00000413138 3018 ntAPPRIS ALT2 TSL 5 BASIC15.1■□□□□ 0.01
PDLIM3Q53GG5 FARSA-202ENST00000423140 1720 ntTSL 2 BASIC15.1■□□□□ 0.01
PDLIM3Q53GG5 MTA1-207ENST00000435036 2888 ntTSL 5 BASIC15.1■□□□□ 0.01
PDLIM3Q53GG5 TMEM234-201ENST00000309777 1082 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
PDLIM3Q53GG5 FGF8-201ENST00000320185 799 ntAPPRIS P4 TSL 1 (best) BASIC15.1■□□□□ 0.01
PDLIM3Q53GG5 HBA1-201ENST00000320868 577 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
PDLIM3Q53GG5 GYG2P1-201ENST00000357871 623 ntTSL 3 BASIC15.1■□□□□ 0.01
PDLIM3Q53GG5 C9orf129-201ENST00000375419 1154 ntAPPRIS P1 TSL 5 BASIC15.1■□□□□ 0.01
PDLIM3Q53GG5 RAMP1-204ENST00000409726 734 ntTSL 3 BASIC15.1■□□□□ 0.01
PDLIM3Q53GG5 HMGB3P22-201ENST00000442010 597 ntTSL 2 BASIC15.1■□□□□ 0.01
PDLIM3Q53GG5 AC007563.2-201ENST00000447289 552 ntTSL 5 BASIC15.1■□□□□ 0.01
PDLIM3Q53GG5 MCRIP1-201ENST00000455127 1209 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
PDLIM3Q53GG5 LINC00894-209ENST00000458274 547 ntTSL 2 BASIC15.1■□□□□ 0.01
PDLIM3Q53GG5 LINC01385-201ENST00000512310 780 ntTSL 4 BASIC15.1■□□□□ 0.01
PDLIM3Q53GG5 TFF3-204ENST00000518498 1109 ntAPPRIS P2 TSL 1 (best) BASIC15.1■□□□□ 0.01
PDLIM3Q53GG5 CD320-202ENST00000537716 1119 ntTSL 2 BASIC15.1■□□□□ 0.01
PDLIM3Q53GG5 BVES-AS1-203ENST00000580511 853 ntTSL 5 BASIC15.1■□□□□ 0.01
PDLIM3Q53GG5 RPL23AP53-202ENST00000606507 370 ntTSL 3 BASIC15.1■□□□□ 0.01
PDLIM3Q53GG5 CYB561D2-210ENST00000607121 1004 ntTSL 2 BASIC15.1■□□□□ 0.01
PDLIM3Q53GG5 IRF5-214ENST00000613821 595 ntTSL 5 BASIC15.1■□□□□ 0.01
PDLIM3Q53GG5 AC068587.9-201ENST00000641814 219 ntBASIC15.1■□□□□ 0.01
PDLIM3Q53GG5 TRIM41-202ENST00000351937 2696 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
PDLIM3Q53GG5 EEF1D-205ENST00000442189 2207 ntAPPRIS P4 TSL 1 (best) BASIC15.1■□□□□ 0.01
PDLIM3Q53GG5 CBS-203ENST00000398158 2453 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
PDLIM3Q53GG5 CBSL-206ENST00000624406 2453 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
PDLIM3Q53GG5 MTERF2-202ENST00000392830 1763 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 21.1 ms