RNA–Protein interactions for RNA: ENST00000518498.1

TFF3-204, Transcript of trefoil factor 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene TFF3, Length 1,109 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TFF3-204ENST00000518498 NISCHQ9Y2I1 1504 aa45.08■■■■■ 4.81
TFF3-204ENST00000518498 ABCC9O60706 1549 aa40.68■■■■■ 4.1
TFF3-204ENST00000518498 CCDC180Q9P1Z9 1646 aa40.45■■■■■ 4.07
TFF3-204ENST00000518498 RB1CC1Q8TDY2 1594 aa38.64■■■■□ 3.78
TFF3-204ENST00000518498 DNAJC5BQ9UF47 199 aa38.36■■■■□ 3.73
TFF3-204ENST00000518498 NACADO15069 1562 aa38.35■■■■□ 3.73
TFF3-204ENST00000518498 DCAF8L2P0C7V8 631 aa38.29■■■■□ 3.72
TFF3-204ENST00000518498 PABPN1Q86U42 306 aaKnown RBP eCLIP37.93■■■■□ 3.66
TFF3-204ENST00000518498 MYO15BQ96JP2 1530 aa37.76■■■■□ 3.63
TFF3-204ENST00000518498 UNC13AQ9UPW8 1703 aa37.69■■■■□ 3.62
TFF3-204ENST00000518498 BICRAQ9NZM4 1560 aa37.49■■■■□ 3.59
TFF3-204ENST00000518498 ZCCHC6Q5VYS8 1495 aaKnown RBP37.28■■■■□ 3.56
TFF3-204ENST00000518498 DCAF1Q9Y4B6 1507 aa37.21■■■■□ 3.55
TFF3-204ENST00000518498 SHROOM4Q9ULL8 1493 aa36.96■■■■□ 3.51
TFF3-204ENST00000518498 SCRIBQ14160 1630 aa36.88■■■■□ 3.49
TFF3-204ENST00000518498 CC2D2AQ9P2K1 1620 aa36.72■■■■□ 3.47
TFF3-204ENST00000518498 CECR2Q9BXF3 1484 aa36.67■■■■□ 3.46
TFF3-204ENST00000518498 EIF4G1Q04637 1599 aaKnown RBP36.59■■■■□ 3.45
TFF3-204ENST00000518498 NCAPD3P42695 1498 aa35.43■■■■□ 3.26
TFF3-204ENST00000518498 DNAJC5Q9H3Z4 198 aa35.37■■■■□ 3.25
TFF3-204ENST00000518498 ATAD2BQ9ULI0 1458 aa35.29■■■■□ 3.24
TFF3-204ENST00000518498 SMARCA4P51532 1647 aa35.17■■■■□ 3.22
TFF3-204ENST00000518498 SMARCA2P51531 1590 aa35.17■■■■□ 3.22
TFF3-204ENST00000518498 ERCC6Q03468 1493 aa35.15■■■■□ 3.22
TFF3-204ENST00000518498 CUX2O14529 1486 aa35.11■■■■□ 3.21
TFF3-204ENST00000518498 HMGXB3Q12766 1538 aa35.08■■■■□ 3.21
TFF3-204ENST00000518498 BAZ1AQ9NRL2 1556 aaPredicted RBP35■■■■□ 3.19
TFF3-204ENST00000518498 BAZ1BQ9UIG0 1483 aaKnown RBP34.93■■■■□ 3.18
TFF3-204ENST00000518498 NESP48681 1621 aa34.89■■■■□ 3.18
TFF3-204ENST00000518498 PEG3Q9GZU2 1588 aa34.83■■■■□ 3.17
TFF3-204ENST00000518498 MROH2BQ7Z745 1585 aa34.73■■■■□ 3.15
TFF3-204ENST00000518498 LAMC3Q9Y6N6 1575 aa34.62■■■■□ 3.13
TFF3-204ENST00000518498 THOC2Q8NI27 1593 aaKnown RBP34.5■■■■□ 3.11
TFF3-204ENST00000518498 PDS5BQ9NTI5 1447 aa34.48■■■■□ 3.11
TFF3-204ENST00000518498 KIF21AQ7Z4S6 1674 aa34.38■■■■□ 3.09
TFF3-204ENST00000518498 CADPSQ9ULU8 1353 aa34.36■■■■□ 3.09
TFF3-204ENST00000518498 WIZO95785 1651 aa34.3■■■■□ 3.08
TFF3-204ENST00000518498 MRC2Q9UBG0 1479 aa34.14■■■■□ 3.06
TFF3-204ENST00000518498 WDR62O43379 1518 aa34.04■■■■□ 3.04
TFF3-204ENST00000518498 RSF1Q96T23 1441 aaPredicted RBP33.98■■■■□ 3.03
TFF3-204ENST00000518498 CEP164Q9UPV0 1460 aa33.98■■■■□ 3.03
TFF3-204ENST00000518498 FANCD2Q9BXW9 1451 aa33.95■■■■□ 3.02
TFF3-204ENST00000518498 CFTRP13569 1480 aa33.91■■■■□ 3.02
TFF3-204ENST00000518498 TOP2AP11388 1531 aaKnown RBP33.84■■■■□ 3.01
TFF3-204ENST00000518498 TRIM41Q8WV44 630 aa33.76■■■□□ 2.99
TFF3-204ENST00000518498 URB2Q14146 1524 aaKnown RBP33.65■■■□□ 2.98
TFF3-204ENST00000518498 OSCARQ8IYS5 282 aa33.61■■■□□ 2.97
TFF3-204ENST00000518498 CCDC88BA6NC98 1476 aa33.52■■■□□ 2.96
TFF3-204ENST00000518498 PRDM2Q13029 1718 aa33.45■■■□□ 2.95
TFF3-204ENST00000518498 IFT140Q96RY7 1462 aa33.32■■■□□ 2.92
TFF3-204ENST00000518498 TOPBP1Q92547 1522 aa33.28■■■□□ 2.92
TFF3-204ENST00000518498 ZNF608Q9ULD9 1512 aaPredicted RBP33.27■■■□□ 2.92
TFF3-204ENST00000518498 ABCC8Q09428 1581 aa33.24■■■□□ 2.91
TFF3-204ENST00000518498 DNMBPQ6XZF7 1577 aa33.11■■■□□ 2.89
TFF3-204ENST00000518498 RIMBP3CA6NJZ7 1639 aa33.04■■■□□ 2.88
TFF3-204ENST00000518498 RIMBP3BA6NNM3 1639 aa33.04■■■□□ 2.88
TFF3-204ENST00000518498 RIMBP3Q9UFD9 1639 aa33.04■■■□□ 2.88
TFF3-204ENST00000518498 EIF4G3O43432 1585 aaKnown RBP33.02■■■□□ 2.88
TFF3-204ENST00000518498 AQRO60306 1485 aaKnown RBP eCLIP32.99■■■□□ 2.87
TFF3-204ENST00000518498 TARBP1Q13395 1621 aaKnown RBP32.96■■■□□ 2.87
TFF3-204ENST00000518498 ARHGEF11O15085 1522 aa32.93■■■□□ 2.86
TFF3-204ENST00000518498 POLA1P09884 1462 aaPredicted RBP32.92■■■□□ 2.86
TFF3-204ENST00000518498 FBLN2P98095 1184 aa32.89■■■□□ 2.86
TFF3-204ENST00000518498 SOGA1O94964 1423 aa32.85■■■□□ 2.85
TFF3-204ENST00000518498 RAD54L2Q9Y4B4 1467 aa32.83■■■□□ 2.85
TFF3-204ENST00000518498 CYB5RLQ6IPT4 315 aa32.83■■■□□ 2.85
TFF3-204ENST00000518498 CHD1O14646 1710 aa32.81■■■□□ 2.84
TFF3-204ENST00000518498 TDRD9Q8NDG6 1382 aaKnown RBP32.79■■■□□ 2.84
TFF3-204ENST00000518498 FGD5Q6ZNL6 1462 aa32.69■■■□□ 2.82
TFF3-204ENST00000518498 CUX1P39880 1505 aa32.62■■■□□ 2.81
TFF3-204ENST00000518498 CHMP7Q8WUX9 453 aaPredicted RBP32.62■■■□□ 2.81
TFF3-204ENST00000518498 WDR97A6NE52 1622 aa32.61■■■□□ 2.81
TFF3-204ENST00000518498 SNAPC4Q5SXM2 1469 aa32.61■■■□□ 2.81
TFF3-204ENST00000518498 ARAP1Q96P48 1450 aa32.59■■■□□ 2.81
TFF3-204ENST00000518498 TRHP20396 242 aaPredicted RBP32.53■■■□□ 2.8
TFF3-204ENST00000518498 GRIN2BQ13224 1484 aa32.53■■■□□ 2.8
TFF3-204ENST00000518498 MAGI1Q96QZ7 1491 aaPredicted RBP32.52■■■□□ 2.8
TFF3-204ENST00000518498 SUPT5HO00267 1087 aaKnown RBP32.47■■■□□ 2.79
TFF3-204ENST00000518498 CLASP1Q7Z460 1538 aa32.45■■■□□ 2.78
TFF3-204ENST00000518498 SYNJ1O43426 1573 aa32.45■■■□□ 2.78
TFF3-204ENST00000518498 SYNJ2O15056 1496 aa32.42■■■□□ 2.78
TFF3-204ENST00000518498 GAPVD1Q14C86 1478 aa32.4■■■□□ 2.78
TFF3-204ENST00000518498 ABCA10Q8WWZ4 1543 aa32.31■■■□□ 2.76
TFF3-204ENST00000518498 PBRM1Q86U86 1689 aa32.31■■■□□ 2.76
TFF3-204ENST00000518498 ABCA5Q8WWZ7 1642 aa32.23■■■□□ 2.75
TFF3-204ENST00000518498 WRNQ14191 1432 aaPredicted RBP eCLIP32.2■■■□□ 2.75
TFF3-204ENST00000518498 GRIN2AQ12879 1464 aa32.09■■■□□ 2.73
TFF3-204ENST00000518498 TOP2BQ02880 1626 aa32.06■■■□□ 2.72
TFF3-204ENST00000518498 BIVM-ERCC5R4GMW8 1640 aa32.04■■■□□ 2.72
TFF3-204ENST00000518498 ADAMTS12P58397 1594 aa31.99■■■□□ 2.71
TFF3-204ENST00000518498 FHAD1B1AJZ9 1412 aa31.99■■■□□ 2.71
TFF3-204ENST00000518498 NUP160Q12769 1436 aa31.98■■■□□ 2.71
TFF3-204ENST00000518498 CEP170Q5SW79 1584 aa31.95■■■□□ 2.71
TFF3-204ENST00000518498 ERCC6L2Q5T890 1561 aa31.94■■■□□ 2.7
TFF3-204ENST00000518498 ERICH3Q5RHP9 1530 aa31.9■■■□□ 2.7
TFF3-204ENST00000518498 SHROOM2Q13796 1616 aa31.82■■■□□ 2.68
TFF3-204ENST00000518498 JPH4Q96JJ6 628 aa31.77■■■□□ 2.68
TFF3-204ENST00000518498 PRG4Q92954 1404 aaPredicted RBP31.74■■■□□ 2.67
TFF3-204ENST00000518498 AEBP2Q6ZN18 517 aaPredicted RBP31.71■■■□□ 2.67
TFF3-204ENST00000518498 NPM1P06748 294 aaKnown RBP eCLIP31.55■■■□□ 2.64
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms