Protein–RNA interactions for Protein: O60224

SSX4, Protein SSX4, humanhuman

Predictions only

Length 188 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSX4O60224 RND2-202ENST00000587250 4147 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
SSX4O60224 FICD-204ENST00000552695 3347 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
SSX4O60224 USP32-201ENST00000300896 5171 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
SSX4O60224 TMEM189-UBE2V1-201ENST00000341698 2757 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
SSX4O60224 ZBTB32-201ENST00000262630 1960 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
SSX4O60224 SLC27A5-207ENST00000601355 1987 ntAPPRIS ALT2 TSL 2 BASIC16.53■□□□□ 0.24
SSX4O60224 C5orf30-201ENST00000319933 3049 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
SSX4O60224 AL445686.2-201ENST00000577528 1445 ntTSL 3 BASIC16.53■□□□□ 0.24
SSX4O60224 PRRT1-201ENST00000211413 1909 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
SSX4O60224 RAI1-201ENST00000353383 7662 ntAPPRIS P2 TSL 1 (best) BASIC16.52■□□□□ 0.24
SSX4O60224 PDE9A-209ENST00000398227 1606 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
SSX4O60224 CCDC112-205ENST00000506442 2145 ntAPPRIS ALT2 TSL 2 BASIC16.52■□□□□ 0.24
SSX4O60224 LITAF-209ENST00000571688 2632 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
SSX4O60224 QPCTL-201ENST00000012049 2310 ntAPPRIS P1 TSL 2 BASIC16.52■□□□□ 0.24
SSX4O60224 LRRC58-201ENST00000295628 7903 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
SSX4O60224 IRX1P1-201ENST00000438849 1838 ntBASIC16.52■□□□□ 0.24
SSX4O60224 ZBTB33-201ENST00000326624 5211 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
SSX4O60224 ACAA1-209ENST00000450296 1570 ntTSL 5 BASIC16.52■□□□□ 0.24
SSX4O60224 BCL2-203ENST00000589955 5011 ntBASIC16.52■□□□□ 0.24
SSX4O60224 GDAP1L1-202ENST00000372952 722 ntTSL 5 BASIC16.52■□□□□ 0.24
SSX4O60224 MESTP1-201ENST00000404287 994 ntBASIC16.52■□□□□ 0.24
SSX4O60224 AC103564.1-201ENST00000437330 562 ntTSL 5 BASIC16.52■□□□□ 0.24
SSX4O60224 C1orf52-203ENST00000471115 1219 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
SSX4O60224 AC011506.1-201ENST00000474329 610 ntBASIC16.52■□□□□ 0.24
SSX4O60224 CALM3-208ENST00000596362 1203 ntAPPRIS P1 TSL 2 BASIC16.52■□□□□ 0.24
SSX4O60224 DGCR10-201ENST00000609839 495 ntBASIC16.52■□□□□ 0.24
SSX4O60224 CROCCP4-202ENST00000633627 573 ntTSL 3 BASIC16.52■□□□□ 0.24
SSX4O60224 MCOLN2-201ENST00000284027 1729 ntAPPRIS P1 TSL 5 BASIC16.52■□□□□ 0.24
SSX4O60224 SOCS2-212ENST00000622746 2881 ntAPPRIS P1 TSL 3 BASIC16.52■□□□□ 0.24
SSX4O60224 GALNT2-201ENST00000366672 4454 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
SSX4O60224 AL079303.2-201ENST00000555107 2613 ntTSL 3 BASIC16.52■□□□□ 0.23
SSX4O60224 SIM2-201ENST00000290399 4442 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
SSX4O60224 RGS11-202ENST00000316163 2376 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
SSX4O60224 PSMG4-209ENST00000473000 4603 ntTSL 2 BASIC16.52■□□□□ 0.23
SSX4O60224 PCDHA13-201ENST00000289272 5260 ntAPPRIS P2 TSL 1 (best) BASIC16.52■□□□□ 0.23
SSX4O60224 XYLT2-203ENST00000507602 2107 ntTSL 2 BASIC16.52■□□□□ 0.23
SSX4O60224 ADGRA3-202ENST00000334304 4566 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
SSX4O60224 COL18A1-204ENST00000400337 5436 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
SSX4O60224 LRP4-201ENST00000378623 8076 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
SSX4O60224 DBN1-210ENST00000512501 1878 ntTSL 3 BASIC16.52■□□□□ 0.23
SSX4O60224 CCAR2-214ENST00000613179 1421 ntTSL 5 BASIC16.52■□□□□ 0.23
SSX4O60224 NTRK1-202ENST00000368196 2701 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.23
SSX4O60224 TRABD-202ENST00000380909 2272 ntAPPRIS P3 TSL 5 BASIC16.52■□□□□ 0.23
SSX4O60224 CNOT9-209ENST00000627282 1621 ntTSL 2 BASIC16.52■□□□□ 0.23
SSX4O60224 GATA6-201ENST00000269216 3770 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
SSX4O60224 SYNM-202ENST00000336292 7394 ntAPPRIS P4 TSL 1 (best) BASIC16.52■□□□□ 0.23
SSX4O60224 SLC39A1-209ENST00000537590 2022 ntTSL 2 BASIC16.52■□□□□ 0.23
SSX4O60224 SPG7-201ENST00000268704 3076 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
SSX4O60224 HMGXB3-206ENST00000613459 5567 ntAPPRIS ALT2 TSL 5 BASIC16.51■□□□□ 0.23
SSX4O60224 SIGIRR-202ENST00000397632 1598 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
SSX4O60224 CSAD-209ENST00000453446 1774 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
SSX4O60224 CYP2W1-202ENST00000340150 2361 ntTSL 2 BASIC16.51■□□□□ 0.23
SSX4O60224 YTHDF3-212ENST00000621413 2370 ntTSL 5 BASIC16.51■□□□□ 0.23
SSX4O60224 HOXD11-201ENST00000249504 1533 ntAPPRIS P1 TSL 3 BASIC16.51■□□□□ 0.23
SSX4O60224 TOM1L1-221ENST00000575882 2507 ntAPPRIS P2 TSL 1 (best) BASIC16.51■□□□□ 0.23
SSX4O60224 WT1-201ENST00000332351 3122 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
SSX4O60224 AC011676.5-201ENST00000624864 2660 ntBASIC16.51■□□□□ 0.23
SSX4O60224 CASKIN2-201ENST00000321617 5015 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
SSX4O60224 FAM131C-201ENST00000375662 1695 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
SSX4O60224 NT5C1A-201ENST00000235628 1107 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
SSX4O60224 PAX3-201ENST00000258387 958 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
SSX4O60224 NDUFS6-201ENST00000274137 1082 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
SSX4O60224 LGALS7B-201ENST00000314980 483 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
SSX4O60224 AL050404.1-201ENST00000424566 802 ntTSL 2 BASIC16.51■□□□□ 0.23
SSX4O60224 HAGLR-204ENST00000425005 623 ntTSL 3 BASIC16.51■□□□□ 0.23
SSX4O60224 AC004980.1-204ENST00000429707 299 ntBASIC16.51■□□□□ 0.23
SSX4O60224 ECEL1P2-202ENST00000465689 757 ntBASIC16.51■□□□□ 0.23
SSX4O60224 TMEM64-204ENST00000519519 873 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
SSX4O60224 SELENOS-203ENST00000526049 1188 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
SSX4O60224 HRASLS5-205ENST00000539221 1167 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
SSX4O60224 NME3-204ENST00000563498 920 ntTSL 2 BASIC16.51■□□□□ 0.23
SSX4O60224 SLC25A1P4-201ENST00000567977 778 ntBASIC16.51■□□□□ 0.23
SSX4O60224 AP000347.2-202ENST00000421064 3041 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
SSX4O60224 INPP5B-201ENST00000373021 3934 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
SSX4O60224 SIPA1-209ENST00000534313 3521 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
SSX4O60224 GPR142-201ENST00000335666 1437 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
SSX4O60224 TBX6-201ENST00000279386 1796 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
SSX4O60224 TBX6-205ENST00000627355 1796 ntTSL 5 BASIC16.51■□□□□ 0.23
SSX4O60224 OTOP2-201ENST00000331427 2147 ntAPPRIS P1 TSL 5 BASIC16.51■□□□□ 0.23
SSX4O60224 AUNIP-201ENST00000374298 2116 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
SSX4O60224 CERCAM-201ENST00000372838 2685 ntAPPRIS P3 TSL 1 (best) BASIC16.51■□□□□ 0.23
SSX4O60224 SLC25A3-211ENST00000548847 1369 ntTSL 5 BASIC16.51■□□□□ 0.23
SSX4O60224 BMP8B-201ENST00000372827 4822 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
SSX4O60224 SBSPON-201ENST00000297354 3801 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
SSX4O60224 SAMD11-202ENST00000342066 2551 ntAPPRIS P2 TSL 5 BASIC16.5■□□□□ 0.23
SSX4O60224 SAMD11-217ENST00000622503 2557 ntAPPRIS ALT2 TSL 5 BASIC16.5■□□□□ 0.23
SSX4O60224 GXYLT2-201ENST00000389617 3260 ntAPPRIS P1 TSL 5 BASIC16.5■□□□□ 0.23
SSX4O60224 DUSP15-209ENST00000486996 1651 ntTSL 2 BASIC16.5■□□□□ 0.23
SSX4O60224 HIKESHI-207ENST00000533986 1694 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
SSX4O60224 CADPS2-201ENST00000313070 6065 ntTSL 5 BASIC16.5■□□□□ 0.23
SSX4O60224 AC142086.1-202ENST00000398669 1839 ntTSL 2 BASIC16.5■□□□□ 0.23
SSX4O60224 EEPD1-201ENST00000242108 4765 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
SSX4O60224 JADE3-204ENST00000614628 4934 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
SSX4O60224 C2orf50-201ENST00000381585 2684 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
SSX4O60224 ISLR2-202ENST00000419208 2306 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
SSX4O60224 SLC8B1-210ENST00000550047 2493 ntTSL 2 BASIC16.5■□□□□ 0.23
SSX4O60224 COX7A1-201ENST00000292907 762 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
SSX4O60224 TMEM53-201ENST00000372235 890 ntTSL 2 BASIC16.5■□□□□ 0.23
SSX4O60224 TSPY1-201ENST00000423647 1171 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
SSX4O60224 NME6-209ENST00000442597 757 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 21.9 ms