RNA–Protein interactions for RNA: ENST00000372235.7

TMEM53-201, Transcript of transmembrane protein 53, humanhuman

TSL 2 BASIC

Gene TMEM53, Length 890 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM53-201ENST00000372235 NISCHQ9Y2I1 1504 aa46.55■■■■■ 5.04
TMEM53-201ENST00000372235 CCDC180Q9P1Z9 1646 aa41.66■■■■■ 4.26
TMEM53-201ENST00000372235 ABCC9O60706 1549 aa41.17■■■■■ 4.18
TMEM53-201ENST00000372235 RB1CC1Q8TDY2 1594 aa39.51■■■■□ 3.92
TMEM53-201ENST00000372235 NACADO15069 1562 aa39.35■■■■□ 3.89
TMEM53-201ENST00000372235 DCAF8L2P0C7V8 631 aa39.13■■■■□ 3.85
TMEM53-201ENST00000372235 MYO15BQ96JP2 1530 aa38.99■■■■□ 3.83
TMEM53-201ENST00000372235 ZCCHC6Q5VYS8 1495 aaKnown RBP38.65■■■■□ 3.78
TMEM53-201ENST00000372235 DCAF1Q9Y4B6 1507 aa38.58■■■■□ 3.77
TMEM53-201ENST00000372235 UNC13AQ9UPW8 1703 aa38.41■■■■□ 3.74
TMEM53-201ENST00000372235 PABPN1Q86U42 306 aaKnown RBP eCLIP38.38■■■■□ 3.73
TMEM53-201ENST00000372235 DNAJC5BQ9UF47 199 aa38.19■■■■□ 3.7
TMEM53-201ENST00000372235 BICRAQ9NZM4 1560 aa38.17■■■■□ 3.7
TMEM53-201ENST00000372235 SHROOM4Q9ULL8 1493 aa37.99■■■■□ 3.67
TMEM53-201ENST00000372235 SCRIBQ14160 1630 aa37.85■■■■□ 3.65
TMEM53-201ENST00000372235 EIF4G1Q04637 1599 aaKnown RBP37.29■■■■□ 3.56
TMEM53-201ENST00000372235 CC2D2AQ9P2K1 1620 aa37.25■■■■□ 3.55
TMEM53-201ENST00000372235 CECR2Q9BXF3 1484 aa37.13■■■■□ 3.53
TMEM53-201ENST00000372235 NCAPD3P42695 1498 aa36.29■■■■□ 3.4
TMEM53-201ENST00000372235 SMARCA4P51532 1647 aa36.2■■■■□ 3.39
TMEM53-201ENST00000372235 SMARCA2P51531 1590 aa36.19■■■■□ 3.38
TMEM53-201ENST00000372235 BAZ1AQ9NRL2 1556 aaPredicted RBP36.18■■■■□ 3.38
TMEM53-201ENST00000372235 ATAD2BQ9ULI0 1458 aa36.18■■■■□ 3.38
TMEM53-201ENST00000372235 HMGXB3Q12766 1538 aa36.05■■■■□ 3.36
TMEM53-201ENST00000372235 PEG3Q9GZU2 1588 aa35.92■■■■□ 3.34
TMEM53-201ENST00000372235 BAZ1BQ9UIG0 1483 aaKnown RBP35.88■■■■□ 3.33
TMEM53-201ENST00000372235 MROH2BQ7Z745 1585 aa35.78■■■■□ 3.32
TMEM53-201ENST00000372235 ERCC6Q03468 1493 aa35.65■■■■□ 3.3
TMEM53-201ENST00000372235 CUX2O14529 1486 aa35.5■■■■□ 3.27
TMEM53-201ENST00000372235 LAMC3Q9Y6N6 1575 aa35.43■■■■□ 3.26
TMEM53-201ENST00000372235 NESP48681 1621 aa35.42■■■■□ 3.26
TMEM53-201ENST00000372235 WIZO95785 1651 aa35.36■■■■□ 3.25
TMEM53-201ENST00000372235 PDS5BQ9NTI5 1447 aa35.26■■■■□ 3.24
TMEM53-201ENST00000372235 RSF1Q96T23 1441 aaPredicted RBP35.23■■■■□ 3.23
TMEM53-201ENST00000372235 CADPSQ9ULU8 1353 aa35.21■■■■□ 3.23
TMEM53-201ENST00000372235 TOP2AP11388 1531 aaKnown RBP35.05■■■■□ 3.2
TMEM53-201ENST00000372235 THOC2Q8NI27 1593 aaKnown RBP35.04■■■■□ 3.2
TMEM53-201ENST00000372235 DNAJC5Q9H3Z4 198 aa35■■■■□ 3.19
TMEM53-201ENST00000372235 KIF21AQ7Z4S6 1674 aa35■■■■□ 3.19
TMEM53-201ENST00000372235 CFTRP13569 1480 aa34.86■■■■□ 3.17
TMEM53-201ENST00000372235 MRC2Q9UBG0 1479 aa34.84■■■■□ 3.17
TMEM53-201ENST00000372235 CEP164Q9UPV0 1460 aa34.79■■■■□ 3.16
TMEM53-201ENST00000372235 FANCD2Q9BXW9 1451 aa34.77■■■■□ 3.16
TMEM53-201ENST00000372235 WDR62O43379 1518 aa34.73■■■■□ 3.15
TMEM53-201ENST00000372235 CCDC88BA6NC98 1476 aa34.6■■■■□ 3.13
TMEM53-201ENST00000372235 PRDM2Q13029 1718 aa34.51■■■■□ 3.12
TMEM53-201ENST00000372235 URB2Q14146 1524 aaKnown RBP34.38■■■■□ 3.09
TMEM53-201ENST00000372235 ABCC8Q09428 1581 aa34.26■■■■□ 3.07
TMEM53-201ENST00000372235 TOPBP1Q92547 1522 aa34.12■■■■□ 3.05
TMEM53-201ENST00000372235 IFT140Q96RY7 1462 aa34.12■■■■□ 3.05
TMEM53-201ENST00000372235 DNMBPQ6XZF7 1577 aa34.06■■■■□ 3.04
TMEM53-201ENST00000372235 OSCARQ8IYS5 282 aa33.96■■■■□ 3.03
TMEM53-201ENST00000372235 SUPT5HO00267 1087 aaKnown RBP33.93■■■■□ 3.02
TMEM53-201ENST00000372235 ZNF608Q9ULD9 1512 aaPredicted RBP33.86■■■■□ 3.01
TMEM53-201ENST00000372235 POLA1P09884 1462 aaPredicted RBP33.79■■■■□ 3
TMEM53-201ENST00000372235 TARBP1Q13395 1621 aaKnown RBP33.75■■■□□ 2.99
TMEM53-201ENST00000372235 EIF4G3O43432 1585 aaKnown RBP33.75■■■□□ 2.99
TMEM53-201ENST00000372235 SOGA1O94964 1423 aa33.7■■■□□ 2.99
TMEM53-201ENST00000372235 AQRO60306 1485 aaKnown RBP eCLIP33.64■■■□□ 2.98
TMEM53-201ENST00000372235 WDR97A6NE52 1622 aa33.64■■■□□ 2.98
TMEM53-201ENST00000372235 FGD5Q6ZNL6 1462 aa33.63■■■□□ 2.97
TMEM53-201ENST00000372235 CUX1P39880 1505 aa33.61■■■□□ 2.97
TMEM53-201ENST00000372235 RAD54L2Q9Y4B4 1467 aa33.6■■■□□ 2.97
TMEM53-201ENST00000372235 TRIM41Q8WV44 630 aa33.54■■■□□ 2.96
TMEM53-201ENST00000372235 TDRD9Q8NDG6 1382 aaKnown RBP33.51■■■□□ 2.96
TMEM53-201ENST00000372235 FBLN2P98095 1184 aa33.42■■■□□ 2.94
TMEM53-201ENST00000372235 GRIN2BQ13224 1484 aa33.39■■■□□ 2.94
TMEM53-201ENST00000372235 CHD1O14646 1710 aa33.39■■■□□ 2.94
TMEM53-201ENST00000372235 MAGI1Q96QZ7 1491 aaPredicted RBP33.37■■■□□ 2.93
TMEM53-201ENST00000372235 SNAPC4Q5SXM2 1469 aa33.34■■■□□ 2.93
TMEM53-201ENST00000372235 ABCA10Q8WWZ4 1543 aa33.33■■■□□ 2.93
TMEM53-201ENST00000372235 WRNQ14191 1432 aaPredicted RBP eCLIP33.32■■■□□ 2.92
TMEM53-201ENST00000372235 RIMBP3CA6NJZ7 1639 aa33.31■■■□□ 2.92
TMEM53-201ENST00000372235 RIMBP3BA6NNM3 1639 aa33.31■■■□□ 2.92
TMEM53-201ENST00000372235 RIMBP3Q9UFD9 1639 aa33.31■■■□□ 2.92
TMEM53-201ENST00000372235 CHMP7Q8WUX9 453 aaPredicted RBP33.31■■■□□ 2.92
TMEM53-201ENST00000372235 GAPVD1Q14C86 1478 aa33.3■■■□□ 2.92
TMEM53-201ENST00000372235 ARHGEF11O15085 1522 aa33.28■■■□□ 2.92
TMEM53-201ENST00000372235 TOP2BQ02880 1626 aa33.25■■■□□ 2.91
TMEM53-201ENST00000372235 BIVM-ERCC5R4GMW8 1640 aa33.23■■■□□ 2.91
TMEM53-201ENST00000372235 SYNJ2O15056 1496 aa33.23■■■□□ 2.91
TMEM53-201ENST00000372235 SYNJ1O43426 1573 aa33.18■■■□□ 2.9
TMEM53-201ENST00000372235 ABCA5Q8WWZ7 1642 aa33.18■■■□□ 2.9
TMEM53-201ENST00000372235 PBRM1Q86U86 1689 aa33.18■■■□□ 2.9
TMEM53-201ENST00000372235 CLASP1Q7Z460 1538 aa33.07■■■□□ 2.88
TMEM53-201ENST00000372235 CYB5RLQ6IPT4 315 aa33.04■■■□□ 2.88
TMEM53-201ENST00000372235 ERICH3Q5RHP9 1530 aa32.95■■■□□ 2.87
TMEM53-201ENST00000372235 ARAP1Q96P48 1450 aa32.94■■■□□ 2.86
TMEM53-201ENST00000372235 FHAD1B1AJZ9 1412 aa32.93■■■□□ 2.86
TMEM53-201ENST00000372235 GRIN2AQ12879 1464 aa32.92■■■□□ 2.86
TMEM53-201ENST00000372235 ADAMTS12P58397 1594 aa32.91■■■□□ 2.86
TMEM53-201ENST00000372235 NUP160Q12769 1436 aa32.79■■■□□ 2.84
TMEM53-201ENST00000372235 CEP170Q5SW79 1584 aa32.7■■■□□ 2.82
TMEM53-201ENST00000372235 KIF27Q86VH2 1401 aa32.69■■■□□ 2.82
TMEM53-201ENST00000372235 TRHP20396 242 aaPredicted RBP32.6■■■□□ 2.81
TMEM53-201ENST00000372235 SHROOM2Q13796 1616 aa32.58■■■□□ 2.81
TMEM53-201ENST00000372235 IGF1RP08069 1367 aa32.56■■■□□ 2.8
TMEM53-201ENST00000372235 CUL7Q14999 1698 aa32.54■■■□□ 2.8
TMEM53-201ENST00000372235 JPH4Q96JJ6 628 aa32.5■■■□□ 2.79
TMEM53-201ENST00000372235 PRG4Q92954 1404 aaPredicted RBP32.45■■■□□ 2.79
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms