RNA–Protein interactions for RNA: ENST00000571688.5

LITAF-209, Transcript of lipopolysaccharide induced TNF factor, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LITAF, Length 2,632 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LITAF-209ENST00000571688 NISCHQ9Y2I1 1504 aa32.5■■■□□ 2.79
LITAF-209ENST00000571688 HRCP23327 699 aa28.45■■■□□ 2.15
LITAF-209ENST00000571688 SHROOM4Q9ULL8 1493 aa28.3■■■□□ 2.12
LITAF-209ENST00000571688 SUPT5HO00267 1087 aaKnown RBP28.13■■■□□ 2.09
LITAF-209ENST00000571688 MYO15BQ96JP2 1530 aa28.01■■■□□ 2.07
LITAF-209ENST00000571688 CHIC1Q5VXU3 224 aa27.81■■■□□ 2.04
LITAF-209ENST00000571688 PCGF6Q9BYE7 350 aa27.79■■■□□ 2.04
LITAF-209ENST00000571688 PPARGC1BQ86YN6 1023 aaKnown RBP27.7■■■□□ 2.02
LITAF-209ENST00000571688 ZCCHC6Q5VYS8 1495 aaKnown RBP27.68■■■□□ 2.02
LITAF-209ENST00000571688 DCAF1Q9Y4B6 1507 aa27.52■■■□□ 2
LITAF-209ENST00000571688 PELP1Q8IZL8 1130 aaKnown RBP27.28■■□□□ 1.96
LITAF-209ENST00000571688 CCDC180Q9P1Z9 1646 aa27.24■■□□□ 1.95
LITAF-209ENST00000571688 TRIM26Q12899 539 aaPredicted RBP27.08■■□□□ 1.93
LITAF-209ENST00000571688 LOC105371045A0A1W2PR82 267 aa27.01■■□□□ 1.91
LITAF-209ENST00000571688 ZEB1P37275 1124 aaPredicted RBP26.87■■□□□ 1.89
LITAF-209ENST00000571688 SCAF1Q9H7N4 1312 aaKnown RBP26.77■■□□□ 1.88
LITAF-209ENST00000571688 DCAF8L2P0C7V8 631 aa26.59■■□□□ 1.85
LITAF-209ENST00000571688 ABCC9O60706 1549 aa26.31■■□□□ 1.8
LITAF-209ENST00000571688 ACIN1Q9UKV3 1341 aaKnown RBP26.21■■□□□ 1.79
LITAF-209ENST00000571688 MYT1Q01538 1121 aa26.2■■□□□ 1.79
LITAF-209ENST00000571688 TRIM41Q8WV44 630 aa26.12■■□□□ 1.77
LITAF-209ENST00000571688 NEUROD1Q13562 356 aa26.08■■□□□ 1.77
LITAF-209ENST00000571688 RSF1Q96T23 1441 aaPredicted RBP26.04■■□□□ 1.76
LITAF-209ENST00000571688 FAM9AQ8IZU1 332 aaPredicted RBP25.95■■□□□ 1.74
LITAF-209ENST00000571688 RB1CC1Q8TDY2 1594 aa25.95■■□□□ 1.74
LITAF-209ENST00000571688 GTF3C3Q9Y5Q9 886 aa25.9■■□□□ 1.74
LITAF-209ENST00000571688 CENPBP07199 599 aaPredicted RBP25.87■■□□□ 1.73
LITAF-209ENST00000571688 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP25.82■■□□□ 1.72
LITAF-209ENST00000571688 DIEXFQ68CQ4 756 aaKnown RBP25.8■■□□□ 1.72
LITAF-209ENST00000571688 CCER1Q8TC90 406 aaPredicted RBP25.78■■□□□ 1.72
LITAF-209ENST00000571688 EHMT2Q96KQ7 1210 aa25.7■■□□□ 1.7
LITAF-209ENST00000571688 SCRIBQ14160 1630 aa25.68■■□□□ 1.7
LITAF-209ENST00000571688 WRNQ14191 1432 aaPredicted RBP eCLIP25.44■■□□□ 1.66
LITAF-209ENST00000571688 ZNF316A6NFI3 1004 aaPredicted RBP25.38■■□□□ 1.65
LITAF-209ENST00000571688 EIF4G1Q04637 1599 aaKnown RBP25.35■■□□□ 1.65
LITAF-209ENST00000571688 MROH2BQ7Z745 1585 aa25.32■■□□□ 1.64
LITAF-209ENST00000571688 CECR2Q9BXF3 1484 aa25.3■■□□□ 1.64
LITAF-209ENST00000571688 WIZO95785 1651 aa25.26■■□□□ 1.63
LITAF-209ENST00000571688 YTHDC1Q96MU7 727 aaKnown RBP25.21■■□□□ 1.63
LITAF-209ENST00000571688 CEP162Q5TB80 1403 aa25.2■■□□□ 1.62
LITAF-209ENST00000571688 BAZ1AQ9NRL2 1556 aaPredicted RBP25.18■■□□□ 1.62
LITAF-209ENST00000571688 MIER1Q8N108 512 aa25.13■■□□□ 1.61
LITAF-209ENST00000571688 TTBK1Q5TCY1 1321 aaPredicted RBP25.12■■□□□ 1.61
LITAF-209ENST00000571688 TNIKQ9UKE5 1360 aa25.09■■□□□ 1.61
LITAF-209ENST00000571688 CCDC88BA6NC98 1476 aa25.03■■□□□ 1.6
LITAF-209ENST00000571688 ABCC8Q09428 1581 aa24.99■■□□□ 1.59
LITAF-209ENST00000571688 NACADO15069 1562 aa24.95■■□□□ 1.59
LITAF-209ENST00000571688 SOGA1O94964 1423 aa24.91■■□□□ 1.58
LITAF-209ENST00000571688 EEA1Q15075 1411 aa24.91■■□□□ 1.58
LITAF-209ENST00000571688 CLSPNQ9HAW4 1339 aa24.89■■□□□ 1.57
LITAF-209ENST00000571688 TOP2AP11388 1531 aaKnown RBP24.84■■□□□ 1.57
LITAF-209ENST00000571688 GOLGA3Q08378 1498 aa24.8■■□□□ 1.56
LITAF-209ENST00000571688 CSRNP3Q8WYN3 585 aa24.8■■□□□ 1.56
LITAF-209ENST00000571688 SUPT16HQ9Y5B9 1047 aaKnown RBP24.76■■□□□ 1.55
LITAF-209ENST00000571688 RUSC2Q8N2Y8 1516 aa24.76■■□□□ 1.55
LITAF-209ENST00000571688 UBTFP17480 764 aaKnown RBP24.75■■□□□ 1.55
LITAF-209ENST00000571688 SMARCA2P51531 1590 aa24.75■■□□□ 1.55
LITAF-209ENST00000571688 HNRNPUL2Q1KMD3 747 aaKnown RBP24.74■■□□□ 1.55
LITAF-209ENST00000571688 ANP32EQ9BTT0 268 aa24.61■■□□□ 1.53
LITAF-209ENST00000571688 TSHZ2Q9NRE2 1034 aa24.61■■□□□ 1.53
LITAF-209ENST00000571688 SMARCA4P51532 1647 aa24.59■■□□□ 1.53
LITAF-209ENST00000571688 KIF21BO75037 1637 aa24.58■■□□□ 1.53
LITAF-209ENST00000571688 CEP164Q9UPV0 1460 aa24.56■■□□□ 1.52
LITAF-209ENST00000571688 VPS8Q8N3P4 1428 aa24.56■■□□□ 1.52
LITAF-209ENST00000571688 CLIP1P30622 1438 aa24.53■■□□□ 1.52
LITAF-209ENST00000571688 DHX57Q6P158 1386 aaKnown RBP24.46■■□□□ 1.51
LITAF-209ENST00000571688 BAZ1BQ9UIG0 1483 aaKnown RBP24.42■■□□□ 1.5
LITAF-209ENST00000571688 BCL11AQ9H165 835 aa24.4■■□□□ 1.5
LITAF-209ENST00000571688 APLP2Q06481 763 aa24.37■■□□□ 1.49
LITAF-209ENST00000571688 SYNJ1O43426 1573 aa24.33■■□□□ 1.48
LITAF-209ENST00000571688 RAPGEF2Q9Y4G8 1499 aa24.26■■□□□ 1.47
LITAF-209ENST00000571688 CUX2O14529 1486 aa24.18■■□□□ 1.46
LITAF-209ENST00000571688 UNC13AQ9UPW8 1703 aa24.15■■□□□ 1.46
LITAF-209ENST00000571688 RRBP1Q9P2E9 1410 aaKnown RBP24.14■■□□□ 1.45
LITAF-209ENST00000571688 KCNH8Q96L42 1107 aa24.13■■□□□ 1.45
LITAF-209ENST00000571688 BCANQ96GW7 911 aa24.09■■□□□ 1.45
LITAF-209ENST00000571688 ARAP1Q96P48 1450 aa24.08■■□□□ 1.45
LITAF-209ENST00000571688 PEG3Q9GZU2 1588 aa24.08■■□□□ 1.44
LITAF-209ENST00000571688 FKBP8Q14318 412 aa24.07■■□□□ 1.44
LITAF-209ENST00000571688 RBM19Q9Y4C8 960 aaKnown RBP24.03■■□□□ 1.44
LITAF-209ENST00000571688 ERICH3Q5RHP9 1530 aa24.02■■□□□ 1.44
LITAF-209ENST00000571688 RANGAP1P46060 587 aaPredicted RBP24.02■■□□□ 1.44
LITAF-209ENST00000571688 KANK4Q5T7N3 995 aaPredicted RBP24.02■■□□□ 1.44
LITAF-209ENST00000571688 MAPKBP1O60336 1514 aa23.96■■□□□ 1.43
LITAF-209ENST00000571688 TOP2BQ02880 1626 aa23.95■■□□□ 1.42
LITAF-209ENST00000571688 CCNB3Q8WWL7 1395 aa23.94■■□□□ 1.42
LITAF-209ENST00000571688 PRXQ9BXM0 1461 aa23.93■■□□□ 1.42
LITAF-209ENST00000571688 NEFLP07196 543 aa23.9■■□□□ 1.42
LITAF-209ENST00000571688 BIVM-ERCC5R4GMW8 1640 aa23.86■■□□□ 1.41
LITAF-209ENST00000571688 RAB3GAP2Q9H2M9 1393 aa23.85■■□□□ 1.41
LITAF-209ENST00000571688 WDR97A6NE52 1622 aa23.84■■□□□ 1.41
LITAF-209ENST00000571688 DDX10Q13206 875 aaKnown RBP23.83■■□□□ 1.41
LITAF-209ENST00000571688 PPP1R15AO75807 674 aaPredicted RBP23.82■■□□□ 1.4
LITAF-209ENST00000571688 MSH5O43196 834 aa23.8■■□□□ 1.4
LITAF-209ENST00000571688 CCER2I3L3R5 266 aa23.8■■□□□ 1.4
LITAF-209ENST00000571688 ITGAEP38570 1179 aa23.75■■□□□ 1.39
LITAF-209ENST00000571688 BICRAQ9NZM4 1560 aa23.74■■□□□ 1.39
LITAF-209ENST00000571688 ATAD2BQ9ULI0 1458 aa23.72■■□□□ 1.39
LITAF-209ENST00000571688 FANCIQ9NVI1 1328 aa23.72■■□□□ 1.39
LITAF-209ENST00000571688 SETD5Q9C0A6 1442 aa23.72■■□□□ 1.39
Retrieved 100 of 20,778 RNA–protein pairs in 9.6 ms