Protein–RNA interactions for Protein: Q92900

UPF1, Regulator of nonsense transcripts 1, humanhuman

Known RBP eCLIP

Length 1,129 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1Q92900 SCAMP5-218ENST00000568423 1142 ntTSL 325.49■■□□□ 1.671e-7■■■□□ 14.7
UPF1Q92900 PRKCZ-201ENST00000378567 2326 ntAPPRIS P1 TSL 1 (best)24.26■■□□□ 1.471e-7■■■□□ 14.7
UPF1Q92900 F10-202ENST00000375559 1517 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.121e-7■■■□□ 14.7
UPF1Q92900 PRKCZ-226ENST00000505322 1859 ntTSL 221.81■■□□□ 1.081e-7■■■□□ 14.7
UPF1Q92900 PRKCZ-204ENST00000461106 1916 ntTSL 220.63■□□□□ 0.891e-7■■■□□ 14.7
UPF1Q92900 ALDH5A1-201ENST00000348925 2266 ntAPPRIS P4 TSL 1 (best) BASIC20.37■□□□□ 0.851e-7■■■□□ 14.7
UPF1Q92900 F10-201ENST00000375551 1509 ntTSL 1 (best) BASIC20.13■□□□□ 0.811e-7■■■□□ 14.7
UPF1Q92900 PRKCZ-214ENST00000478770 1542 ntTSL 219.84■□□□□ 0.771e-7■■■□□ 14.7
UPF1Q92900 F10-205ENST00000477269 907 ntTSL 1 (best)19.19■□□□□ 0.661e-7■■■□□ 14.7
UPF1Q92900 F10-204ENST00000410083 1211 ntTSL 1 (best)18.53■□□□□ 0.561e-7■■■□□ 14.7
UPF1Q92900 F10-203ENST00000409306 1450 ntTSL 3 BASIC18.42■□□□□ 0.541e-7■■■□□ 14.7
UPF1Q92900 PRKCZ-202ENST00000400921 2294 ntTSL 1 (best) BASIC18.25■□□□□ 0.511e-7■■■□□ 14.7
UPF1Q92900 KLF10-201ENST00000285407 3097 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.367e-8■■■□□ 14.7
UPF1Q92900 KLF10-202ENST00000395884 3659 ntTSL 1 (best) BASIC16.66■□□□□ 0.267e-8■■■□□ 14.7
UPF1Q92900 YARS-201ENST00000373477 3238 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.225e-9■■■□□ 14.7
UPF1Q92900 YARS-203ENST00000469100 2247 ntTSL 215.19■□□□□ 0.025e-9■■■□□ 14.7
UPF1Q92900 F10-206ENST00000483537 564 ntTSL 214.2□□□□□ -0.141e-7■■■□□ 14.7
UPF1Q92900 YARS-209ENST00000490826 2178 ntTSL 214.02□□□□□ -0.165e-9■■■□□ 14.7
UPF1Q92900 MANEAL-204ENST00000525897 1294 ntTSL 2 BASIC21.76■■□□□ 1.076e-8■■■□□ 14.7
UPF1Q92900 TMEM14C-203ENST00000467415 899 ntTSL 319.46■□□□□ 0.714e-28■■■□□ 14.7
UPF1Q92900 TMEM14C-205ENST00000541412 1177 ntAPPRIS P1 TSL 2 BASIC18.99■□□□□ 0.634e-28■■■□□ 14.7
UPF1Q92900 TMEM14C-201ENST00000229563 1113 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.584e-28■■■□□ 14.7
UPF1Q92900 ZNF106-201ENST00000263805 10460 ntAPPRIS P1 TSL 1 (best) BASIC7.25□□□□□ -1.251e-6■■■□□ 14.7
UPF1Q92900 STX17-201ENST00000259400 2713 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.331e-6■■■□□ 14.7
UPF1Q92900 UBE2K-201ENST00000261427 5245 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.771e-9■■■□□ 14.7
UPF1Q92900 MBOAT2-201ENST00000305997 7751 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.069e-7■■■□□ 14.7
UPF1Q92900 ERBB2-203ENST00000445658 3238 ntTSL 2 BASIC13.22□□□□□ -0.291e-6■■■□□ 14.6
UPF1Q92900 HNRNPU-228ENST00000640306 2917 ntTSL 517.39■□□□□ 0.371e-8■■■□□ 14.6
UPF1Q92900 HNRNPU-217ENST00000638952 5678 ntTSL 516.82■□□□□ 0.282e-11■■■□□ 14.6
UPF1Q92900 HNRNPU-201ENST00000283179 3120 ntAPPRIS ALT2 TSL 5 BASIC16.19■□□□□ 0.183e-36■■■□□ 14.6
UPF1Q92900 HNRNPU-205ENST00000444376 6827 ntAPPRIS P3 TSL 1 (best) BASIC16.13■□□□□ 0.171e-8■■■□□ 14.6
UPF1Q92900 HNRNPU-227ENST00000640264 328 ntTSL 316.13■□□□□ 0.171e-8■■■□□ 14.6
UPF1Q92900 HNRNPU-204ENST00000440865 3207 ntTSL 2 BASIC14.77□□□□□ -0.052e-11■■■□□ 14.6
UPF1Q92900 HNRNPU-226ENST00000640218 6858 ntAPPRIS ALT2 TSL 1 (best) BASIC14.65□□□□□ -0.061e-8■■■□□ 14.6
UPF1Q92900 HNRNPU-211ENST00000489705 451 ntTSL 313.73□□□□□ -0.211e-8■■■□□ 14.6
UPF1Q92900 HNRNPU-212ENST00000638230 1922 ntTSL 511.61□□□□□ -0.551e-8■■■□□ 14.6
UPF1Q92900 HNRNPU-216ENST00000638716 2640 ntTSL 5 BASIC10.55□□□□□ -0.722e-11■■■□□ 14.6
UPF1Q92900 HNRNPU-202ENST00000366525 2851 ntTSL 59.34□□□□□ -0.923e-36■■■□□ 14.6
UPF1Q92900 HNRNPU-219ENST00000639628 4546 ntTSL 1 (best) BASIC8.51□□□□□ -1.052e-11■■■□□ 14.6
UPF1Q92900 HNRNPU-222ENST00000639880 4239 ntTSL 58.32□□□□□ -1.083e-36■■■□□ 14.6
UPF1Q92900 HNRNPU-208ENST00000475997 5290 ntTSL 55.85□□□□□ -1.471e-8■■■□□ 14.6
UPF1Q92900 HNRNPU-203ENST00000366527 12852 ntTSL 23.99□□□□□ -1.771e-8■■■□□ 14.6
UPF1Q92900 PNPLA3-202ENST00000406117 1480 ntTSL 220.76■□□□□ 0.913e-7■■■□□ 14.6
UPF1Q92900 DNAJB12-205ENST00000463786 2116 ntTSL 223.2■■□□□ 1.34e-7■■■□□ 14.6
UPF1Q92900 LINC00923-202ENST00000503874 1460 ntTSL 1 (best)16.21■□□□□ 0.194e-7■■■□□ 14.6
UPF1Q92900 LINC00923-201ENST00000503768 2036 ntTSL 1 (best) BASIC14.12□□□□□ -0.154e-7■■■□□ 14.6
UPF1Q92900 LINC00923-204ENST00000614972 1181 ntTSL 5 BASIC12.31□□□□□ -0.444e-7■■■□□ 14.6
UPF1Q92900 CSNK1G2-205ENST00000589385 896 ntTSL 527.08■■□□□ 1.932e-11■■■□□ 14.6
UPF1Q92900 CSNK1G2-209ENST00000591752 648 ntTSL 524.89■■□□□ 1.582e-11■■■□□ 14.6
UPF1Q92900 CSNK1G2-204ENST00000589350 780 ntTSL 524.08■■□□□ 1.452e-11■■■□□ 14.6
UPF1Q92900 OPA1-208ENST00000392438 6340 ntAPPRIS ALT1 TSL 1 (best) BASIC15.02■□□□□ -02e-6■■■□□ 14.6
UPF1Q92900 OPA1-201ENST00000361150 6330 ntTSL 5 BASIC14.99□□□□□ -0.012e-6■■■□□ 14.6
UPF1Q92900 OPA1-204ENST00000361828 6381 ntAPPRIS ALT1 TSL 5 BASIC14.65□□□□□ -0.062e-6■■■□□ 14.6
UPF1Q92900 OPA1-203ENST00000361715 6384 ntTSL 5 BASIC14.55□□□□□ -0.082e-6■■■□□ 14.6
UPF1Q92900 OPA1-202ENST00000361510 6492 ntAPPRIS ALT2 TSL 5 BASIC13.73□□□□□ -0.212e-6■■■□□ 14.6
UPF1Q92900 OPA1-205ENST00000361908 6439 ntAPPRIS P3 TSL 1 (best) BASIC13.72□□□□□ -0.212e-6■■■□□ 14.6
UPF1Q92900 HDLBP-214ENST00000427183 6238 ntTSL 2 BASIC12.19□□□□□ -0.462e-6■■■□□ 14.6
UPF1Q92900 HDLBP-203ENST00000391975 6372 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.562e-6■■■□□ 14.6
UPF1Q92900 OPA1-217ENST00000495261 3660 ntTSL 1 (best)3.98□□□□□ -1.772e-6■■■□□ 14.6
UPF1Q92900 PTPN18-203ENST00000409022 993 ntTSL 326.29■■□□□ 1.83e-7■■■□□ 14.6
UPF1Q92900 PTPN18-202ENST00000347849 2472 ntTSL 1 (best) BASIC23.31■■□□□ 1.323e-7■■■□□ 14.6
UPF1Q92900 AC135050.6-202ENST00000613584 392 ntBASIC10.67□□□□□ -0.75e-10■■■□□ 14.6
UPF1Q92900 TGFBI-207ENST00000508076 1034 ntTSL 2 BASIC19.56■□□□□ 0.725e-8■■■□□ 14.6
UPF1Q92900 TGFBI-213ENST00000514554 1691 ntTSL 518.14■□□□□ 0.495e-8■■■□□ 14.6
UPF1Q92900 TGFBI-206ENST00000507018 2469 ntTSL 511.97□□□□□ -0.495e-8■■■□□ 14.6
UPF1Q92900 TGFBI-201ENST00000442011 2804 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.555e-8■■■□□ 14.6
UPF1Q92900 TGFBI-205ENST00000506699 3159 ntTSL 210.85□□□□□ -0.675e-8■■■□□ 14.6
UPF1Q92900 TGFBI-204ENST00000504411 1033 ntTSL 210.82□□□□□ -0.685e-8■■■□□ 14.6
UPF1Q92900 MPDU1-222ENST00000581886 924 ntTSL 316.57■□□□□ 0.243e-12■■■□□ 14.6
UPF1Q92900 NFIC-208ENST00000589537 977 ntTSL 223.64■■□□□ 1.373e-10■■■□□ 14.6
UPF1Q92900 NFIC-202ENST00000395111 1755 ntTSL 2 BASIC19.83■□□□□ 0.773e-10■■■□□ 14.6
UPF1Q92900 NFIC-211ENST00000641145 8399 ntBASIC16.09■□□□□ 0.173e-10■■■□□ 14.6
UPF1Q92900 NFIC-206ENST00000589123 8068 ntTSL 1 (best) BASIC13.72□□□□□ -0.213e-10■■■□□ 14.6
UPF1Q92900 EDF1-203ENST00000371649 790 ntTSL 2 BASIC24.27■■□□□ 1.485e-6■■■□□ 14.6
UPF1Q92900 EDF1-201ENST00000224073 640 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.525e-6■■■□□ 14.6
UPF1Q92900 UNC13D-212ENST00000589670 668 ntTSL 325.91■■□□□ 1.746e-7■■■□□ 14.6
UPF1Q92900 ZNF362-205ENST00000539719 3106 ntAPPRIS P1 TSL 5 BASIC15.7■□□□□ 0.13e-6■■■□□ 14.6
UPF1Q92900 ZNF362-201ENST00000373428 2936 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.033e-6■■■□□ 14.6
UPF1Q92900 UNC13D-201ENST00000207549 4393 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.366e-7■■■□□ 14.6
UPF1Q92900 UNC13D-202ENST00000412096 3648 ntTSL 2 BASIC12.07□□□□□ -0.486e-7■■■□□ 14.6
UPF1Q92900 ZNF556-201ENST00000307635 6574 ntAPPRIS P3 TSL 2 BASIC11.54□□□□□ -0.563e-8■■□□□ 14.5
UPF1Q92900 ZNF552-202ENST00000594473 335 ntTSL 212.31□□□□□ -0.442e-6■■□□□ 14.5
UPF1Q92900 ZNF552-201ENST00000391701 2352 ntAPPRIS P1 TSL 2 BASIC11.46□□□□□ -0.582e-6■■□□□ 14.5
UPF1Q92900 PPIE-203ENST00000372830 1198 ntTSL 1 (best) BASIC21.66■■□□□ 1.061e-8■■□□□ 14.5
UPF1Q92900 PPIE-202ENST00000356511 1079 ntTSL 1 (best) BASIC20.51■□□□□ 0.871e-8■■□□□ 14.5
UPF1Q92900 PPIE-210ENST00000475350 1213 ntTSL 213.97□□□□□ -0.171e-8■■□□□ 14.5
UPF1Q92900 PPIE-201ENST00000324379 1277 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.181e-8■■□□□ 14.5
UPF1Q92900 PPIE-212ENST00000482751 2564 ntTSL 210.43□□□□□ -0.741e-8■■□□□ 14.5
UPF1Q92900 PUS7L-202ENST00000416848 4364 ntAPPRIS P1 TSL 1 (best) BASIC9.98□□□□□ -0.811e-8■■□□□ 14.5
UPF1Q92900 PPIE-214ENST00000495526 4651 ntTSL 1 (best)7.97□□□□□ -1.131e-8■■□□□ 14.5
UPF1Q92900 PUS7L-203ENST00000431332 1873 ntTSL 2 BASIC7.62□□□□□ -1.191e-8■■□□□ 14.5
UPF1Q92900 PUS7L-207ENST00000551923 3313 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.61e-8■■□□□ 14.5
UPF1Q92900 PUS7L-201ENST00000344862 13593 ntAPPRIS P1 TSL 1 (best) BASIC4.56□□□□□ -1.681e-8■■□□□ 14.5
UPF1Q92900 HMGCS1-201ENST00000325110 3506 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.392e-31■■□□□ 14.5
UPF1Q92900 HMGCS1-202ENST00000433297 3466 ntAPPRIS P1 TSL 5 BASIC10.8□□□□□ -0.682e-31■■□□□ 14.5
UPF1Q92900 ABCC6-209ENST00000640696 1893 ntTSL 5 BASIC21.66■■□□□ 1.063e-6■■□□□ 14.5
UPF1Q92900 ABCC6-205ENST00000576204 1914 ntTSL 519.56■□□□□ 0.723e-6■■□□□ 14.5
UPF1Q92900 ABCC6-208ENST00000622290 4941 ntTSL 5 BASIC14.4□□□□□ -0.13e-6■■□□□ 14.5
UPF1Q92900 ABCC6-201ENST00000205557 5747 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.243e-6■■□□□ 14.5
UPF1Q92900 YIPF6-204ENST00000462683 6741 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.298e-7■■□□□ 14.5
Retrieved 100 of 15,879 protein–RNA pairs in 114.5 ms