Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 RNFT2-209ENST00000622220 2176 ntTSL 5 BASIC14.16□□□□□ -0.14
CCDC140Q96MF4 SNAPC3-207ENST00000610884 2453 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
CCDC140Q96MF4 CDK5R1-201ENST00000313401 4325 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
CCDC140Q96MF4 UBE2Q2-208ENST00000569423 2969 ntTSL 2 BASIC14.16□□□□□ -0.14
CCDC140Q96MF4 PNLDC1-207ENST00000610273 1940 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
CCDC140Q96MF4 ACTN4-202ENST00000390009 2102 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
CCDC140Q96MF4 TCP11-228ENST00000611141 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
CCDC140Q96MF4 ACSF2-201ENST00000300441 2235 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
CCDC140Q96MF4 NOC2LP1-202ENST00000452600 2235 ntBASIC14.15□□□□□ -0.14
CCDC140Q96MF4 RSPO4-201ENST00000217260 2707 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
CCDC140Q96MF4 CD276-201ENST00000318424 2738 ntTSL 5 BASIC14.15□□□□□ -0.14
CCDC140Q96MF4 PXK-206ENST00000463280 2825 ntTSL 2 BASIC14.15□□□□□ -0.14
CCDC140Q96MF4 TDRKH-207ENST00000458431 2768 ntAPPRIS P2 TSL 1 (best) BASIC14.15□□□□□ -0.14
CCDC140Q96MF4 FAM213B-202ENST00000378425 2665 ntAPPRIS ALT2 TSL 2 BASIC14.15□□□□□ -0.14
CCDC140Q96MF4 PDE4A-202ENST00000344979 2579 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
CCDC140Q96MF4 KCNN2-208ENST00000631899 2098 ntAPPRIS ALT2 TSL 5 BASIC14.15□□□□□ -0.14
CCDC140Q96MF4 FCMR-201ENST00000367091 1950 ntAPPRIS P3 TSL 1 (best) BASIC14.15□□□□□ -0.14
CCDC140Q96MF4 SRP9-203ENST00000366839 1596 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
CCDC140Q96MF4 UBE2E1-202ENST00000346855 1398 ntTSL 3 BASIC14.15□□□□□ -0.14
CCDC140Q96MF4 LCE3C-201ENST00000333881 425 ntAPPRIS P1 BASIC14.15□□□□□ -0.14
CCDC140Q96MF4 SELENOF-202ENST00000370554 1220 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
CCDC140Q96MF4 GNG5-202ENST00000370645 790 ntAPPRIS P1 TSL 2 BASIC14.15□□□□□ -0.14
CCDC140Q96MF4 ST8SIA1-202ENST00000381424 1036 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
CCDC140Q96MF4 RCN1P1-201ENST00000400413 996 ntBASIC14.15□□□□□ -0.14
CCDC140Q96MF4 ST6GALNAC4P1-201ENST00000435385 499 ntBASIC14.15□□□□□ -0.14
CCDC140Q96MF4 SLC9A3R2-208ENST00000566198 1199 ntTSL 2 BASIC14.15□□□□□ -0.14
CCDC140Q96MF4 RN7SL850P-201ENST00000579959 291 ntBASIC14.15□□□□□ -0.14
CCDC140Q96MF4 CENPX-206ENST00000580435 710 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
CCDC140Q96MF4 AC011498.2-201ENST00000588798 540 ntTSL 3 BASIC14.15□□□□□ -0.14
CCDC140Q96MF4 C16orf74-207ENST00000602914 761 ntAPPRIS ALT2 TSL 2 BASIC14.15□□□□□ -0.14
CCDC140Q96MF4 NADK-201ENST00000341426 3235 ntAPPRIS P3 TSL 2 BASIC14.15□□□□□ -0.14
CCDC140Q96MF4 RNF121-201ENST00000361756 2625 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
CCDC140Q96MF4 MBD1-206ENST00000382948 2434 ntAPPRIS P3 TSL 2 BASIC14.15□□□□□ -0.14
CCDC140Q96MF4 AC005865.2-201ENST00000505276 2303 ntTSL 2 BASIC14.15□□□□□ -0.14
CCDC140Q96MF4 AL590648.2-201ENST00000427949 2225 ntTSL 2 BASIC14.15□□□□□ -0.14
CCDC140Q96MF4 ACADVL-205ENST00000543245 2227 ntTSL 2 BASIC14.15□□□□□ -0.14
CCDC140Q96MF4 BAIAP2L2-202ENST00000381669 2146 ntAPPRIS P2 TSL 1 (best) BASIC14.15□□□□□ -0.14
CCDC140Q96MF4 OGFOD2-212ENST00000538755 1949 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
CCDC140Q96MF4 KANK3-201ENST00000330915 2787 ntAPPRIS P2 TSL 1 (best) BASIC14.15□□□□□ -0.14
CCDC140Q96MF4 DSCR9-201ENST00000454482 1644 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
CCDC140Q96MF4 ANKRD10-201ENST00000267339 2495 ntAPPRIS P1 TSL 2 BASIC14.15□□□□□ -0.14
CCDC140Q96MF4 UBE2QL1-201ENST00000399816 4317 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
CCDC140Q96MF4 TNPO2-203ENST00000450764 4993 ntAPPRIS ALT1 TSL 1 (best) BASIC14.14□□□□□ -0.15
CCDC140Q96MF4 FIBCD1-201ENST00000372337 1868 ntTSL 5 BASIC14.14□□□□□ -0.15
CCDC140Q96MF4 MID1IP1-202ENST00000378474 1889 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
CCDC140Q96MF4 CCDC63-202ENST00000545036 1887 ntAPPRIS ALT2 TSL 2 BASIC14.14□□□□□ -0.15
CCDC140Q96MF4 IRGC-201ENST00000244314 1662 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
CCDC140Q96MF4 SCYL1-202ENST00000279270 1659 ntTSL 5 BASIC14.14□□□□□ -0.15
CCDC140Q96MF4 ZBED3-AS1-208ENST00000512001 1668 ntTSL 3 BASIC14.14□□□□□ -0.15
CCDC140Q96MF4 C19orf57-208ENST00000591586 1559 ntAPPRIS ALT2 TSL 5 BASIC14.14□□□□□ -0.15
CCDC140Q96MF4 GPATCH3-201ENST00000361720 2123 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
CCDC140Q96MF4 MARK2-211ENST00000513765 2671 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
CCDC140Q96MF4 ADAM33-202ENST00000356518 3677 ntAPPRIS P3 TSL 1 (best) BASIC14.14□□□□□ -0.15
CCDC140Q96MF4 FAM50A-202ENST00000393600 1352 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
CCDC140Q96MF4 SLC29A4-202ENST00000396872 5685 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
CCDC140Q96MF4 NDUFAF2-201ENST00000296597 719 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
CCDC140Q96MF4 GNGT2-201ENST00000300406 889 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
CCDC140Q96MF4 GLRX2-201ENST00000367439 701 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
CCDC140Q96MF4 STARP1-201ENST00000397973 869 ntBASIC14.14□□□□□ -0.15
CCDC140Q96MF4 AC008105.2-201ENST00000420431 579 ntTSL 4 BASIC14.14□□□□□ -0.15
CCDC140Q96MF4 AC012618.3-202ENST00000440004 472 ntTSL 4 BASIC14.14□□□□□ -0.15
CCDC140Q96MF4 WDR45-218ENST00000473974 1077 ntTSL 5 BASIC14.14□□□□□ -0.15
CCDC140Q96MF4 AC012213.1-202ENST00000523422 449 ntTSL 3 BASIC14.14□□□□□ -0.15
CCDC140Q96MF4 SLC52A2-205ENST00000526752 710 ntTSL 3 BASIC14.14□□□□□ -0.15
CCDC140Q96MF4 ULK4P3-205ENST00000568486 1158 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
CCDC140Q96MF4 C17orf62-221ENST00000581196 668 ntTSL 4 BASIC14.14□□□□□ -0.15
CCDC140Q96MF4 H3F3B-206ENST00000587560 551 ntAPPRIS P1 TSL 2 BASIC14.14□□□□□ -0.15
CCDC140Q96MF4 NDUFAB1-201ENST00000007516 717 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
CCDC140Q96MF4 SDF4-201ENST00000263741 2079 ntAPPRIS P3 TSL 1 (best) BASIC14.14□□□□□ -0.15
CCDC140Q96MF4 GXYLT1-202ENST00000398675 7497 ntAPPRIS P4 TSL 1 (best) BASIC14.14□□□□□ -0.15
CCDC140Q96MF4 FNBP1-201ENST00000355681 1977 ntTSL 2 BASIC14.14□□□□□ -0.15
CCDC140Q96MF4 PLD3-205ENST00000409419 1966 ntAPPRIS P1 TSL 5 BASIC14.14□□□□□ -0.15
CCDC140Q96MF4 PTGES-201ENST00000340607 1774 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
CCDC140Q96MF4 KANK4-204ENST00000371153 4665 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
CCDC140Q96MF4 ENTPD6-209ENST00000433259 2654 ntTSL 5 BASIC14.13□□□□□ -0.15
CCDC140Q96MF4 ZFYVE21-202ENST00000311141 1383 ntAPPRIS P3 TSL 1 (best) BASIC14.13□□□□□ -0.15
CCDC140Q96MF4 ZMYM5-202ENST00000382905 1382 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
CCDC140Q96MF4 LTBP3-202ENST00000322147 4046 ntAPPRIS P3 TSL 1 (best) BASIC14.13□□□□□ -0.15
CCDC140Q96MF4 MEST-201ENST00000223215 2465 ntAPPRIS P4 TSL 1 (best) BASIC14.13□□□□□ -0.15
CCDC140Q96MF4 FAM19A3-201ENST00000361886 1056 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
CCDC140Q96MF4 COMTD1-201ENST00000372538 976 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
CCDC140Q96MF4 ZMYM5-203ENST00000382907 1092 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
CCDC140Q96MF4 RNF152P1-201ENST00000397754 604 ntBASIC14.13□□□□□ -0.15
CCDC140Q96MF4 IMP3-202ENST00000403490 1237 ntAPPRIS P1 BASIC14.13□□□□□ -0.15
CCDC140Q96MF4 AK4P3-201ENST00000418260 669 ntBASIC14.13□□□□□ -0.15
CCDC140Q96MF4 TMEM9B-AS1-201ENST00000525484 1053 ntTSL 5 BASIC14.13□□□□□ -0.15
CCDC140Q96MF4 NEK7-207ENST00000538004 1036 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
CCDC140Q96MF4 ELAC2-212ENST00000578071 579 ntTSL 4 BASIC14.13□□□□□ -0.15
CCDC140Q96MF4 CADM1-222ENST00000616271 1246 ntTSL 5 BASIC14.13□□□□□ -0.15
CCDC140Q96MF4 AC079602.3-201ENST00000623931 403 ntBASIC14.13□□□□□ -0.15
CCDC140Q96MF4 LHX8-201ENST00000294638 2373 ntAPPRIS P3 TSL 1 (best) BASIC14.13□□□□□ -0.15
CCDC140Q96MF4 STMN3-202ENST00000540534 2351 ntTSL 2 BASIC14.13□□□□□ -0.15
CCDC140Q96MF4 ULK3-220ENST00000569437 2611 ntAPPRIS ALT1 TSL 1 (best) BASIC14.13□□□□□ -0.15
CCDC140Q96MF4 NUDT10-202ENST00000376006 2001 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
CCDC140Q96MF4 STRN4-202ENST00000391910 3628 ntAPPRIS ALT1 TSL 5 BASIC14.13□□□□□ -0.15
CCDC140Q96MF4 DNAJA3-203ENST00000431375 2294 ntTSL 2 BASIC14.13□□□□□ -0.15
CCDC140Q96MF4 RNPS1-219ENST00000566397 1685 ntTSL 2 BASIC14.13□□□□□ -0.15
CCDC140Q96MF4 ADCK5-201ENST00000308860 1949 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
CCDC140Q96MF4 CLASRP-203ENST00000391953 1941 ntTSL 2 BASIC14.13□□□□□ -0.15
CCDC140Q96MF4 ZNF419-205ENST00000424930 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.15
Retrieved 100 of 98,524 protein–RNA pairs in 30 ms