Protein–RNA interactions for Protein: O43679

LDB2, LIM domain-binding protein 2, humanhuman

Predictions only

Length 373 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB2O43679 NPEPL1-204ENST00000525967 1917 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
LDB2O43679 IL1R1-205ENST00000410023 5143 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
LDB2O43679 LCE3C-201ENST00000333881 425 ntAPPRIS P1 BASIC18.28■□□□□ 0.52
LDB2O43679 GNG5-202ENST00000370645 790 ntAPPRIS P1 TSL 2 BASIC18.28■□□□□ 0.52
LDB2O43679 SPDYE15P-201ENST00000424157 909 ntBASIC18.28■□□□□ 0.52
LDB2O43679 NDUFA13-201ENST00000428459 576 ntTSL 2 BASIC18.28■□□□□ 0.52
LDB2O43679 TMA7-201ENST00000438607 561 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
LDB2O43679 AC009185.1-201ENST00000517634 911 ntTSL 3 BASIC18.28■□□□□ 0.52
LDB2O43679 TMEM9B-AS1-201ENST00000525484 1053 ntTSL 5 BASIC18.28■□□□□ 0.52
LDB2O43679 CDKN3-209ENST00000556102 938 ntTSL 5 BASIC18.28■□□□□ 0.52
LDB2O43679 USF2-205ENST00000594064 1179 ntTSL 2 BASIC18.28■□□□□ 0.52
LDB2O43679 AC004076.1-201ENST00000596831 664 ntAPPRIS P1 TSL 2 BASIC18.28■□□□□ 0.52
LDB2O43679 AC079602.3-201ENST00000623931 403 ntBASIC18.28■□□□□ 0.52
LDB2O43679 GUCY1A2-201ENST00000282249 3047 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
LDB2O43679 HNRNPK-202ENST00000360384 2038 ntAPPRIS ALT1 TSL 1 (best) BASIC18.28■□□□□ 0.52
LDB2O43679 SLC23A3-203ENST00000409878 2010 ntAPPRIS P1 TSL 2 BASIC18.28■□□□□ 0.52
LDB2O43679 NRBP1-203ENST00000379852 2163 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
LDB2O43679 ZNF205-206ENST00000620094 2309 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
LDB2O43679 CORO1C-204ENST00000541050 2487 ntAPPRIS P1 TSL 2 BASIC18.28■□□□□ 0.52
LDB2O43679 KRT13-201ENST00000246635 1699 ntAPPRIS P4 TSL 1 (best) BASIC18.28■□□□□ 0.52
LDB2O43679 ATRIP-203ENST00000357105 2403 ntTSL 2 BASIC18.28■□□□□ 0.52
LDB2O43679 BAG3-201ENST00000369085 2571 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
LDB2O43679 QKI-205ENST00000392127 7911 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
LDB2O43679 PAX1-205ENST00000613128 5352 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.52
LDB2O43679 AC018470.1-201ENST00000624790 3129 ntBASIC18.27■□□□□ 0.52
LDB2O43679 PARP16-202ENST00000444347 2352 ntTSL 2 BASIC18.27■□□□□ 0.52
LDB2O43679 CYP4F2-201ENST00000011989 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC18.27■□□□□ 0.52
LDB2O43679 ARSA-201ENST00000216124 2050 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
LDB2O43679 ZNF385A-202ENST00000352268 2076 ntTSL 2 BASIC18.27■□□□□ 0.52
LDB2O43679 SMPD3-211ENST00000568373 2073 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
LDB2O43679 GSTM4-201ENST00000326729 1321 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
LDB2O43679 SRRM2-AS1-203ENST00000571305 1344 ntTSL 2 BASIC18.27■□□□□ 0.52
LDB2O43679 SMARCD1-201ENST00000381513 3237 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
LDB2O43679 TTLL3-209ENST00000426895 2767 ntAPPRIS P2 TSL 2 BASIC18.27■□□□□ 0.52
LDB2O43679 LINC00574-201ENST00000420557 2318 ntTSL 2 BASIC18.27■□□□□ 0.52
LDB2O43679 VIM-201ENST00000224237 1868 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
LDB2O43679 CCDC63-202ENST00000545036 1887 ntAPPRIS ALT2 TSL 2 BASIC18.27■□□□□ 0.52
LDB2O43679 ARNTL-203ENST00000403290 2746 ntAPPRIS ALT1 TSL 1 (best) BASIC18.27■□□□□ 0.52
LDB2O43679 SH2D2A-201ENST00000368198 1599 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.52
LDB2O43679 AC007192.1-201ENST00000593731 5142 ntAPPRIS P1 TSL 2 BASIC18.27■□□□□ 0.52
LDB2O43679 VMAC-201ENST00000339485 2254 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
LDB2O43679 TRPV4-208ENST00000544971 2295 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
LDB2O43679 GABRB1-201ENST00000295454 2143 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
LDB2O43679 FGF8-201ENST00000320185 799 ntAPPRIS P4 TSL 1 (best) BASIC18.27■□□□□ 0.52
LDB2O43679 PIEZO1-202ENST00000327397 1246 ntTSL 2 BASIC18.27■□□□□ 0.52
LDB2O43679 SELENOF-202ENST00000370554 1220 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
LDB2O43679 ST8SIA1-202ENST00000381424 1036 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
LDB2O43679 STARP1-201ENST00000397973 869 ntBASIC18.27■□□□□ 0.52
LDB2O43679 ST6GALNAC4P1-201ENST00000435385 499 ntBASIC18.27■□□□□ 0.52
LDB2O43679 C17orf62-221ENST00000581196 668 ntTSL 4 BASIC18.27■□□□□ 0.52
LDB2O43679 C16orf74-203ENST00000602675 744 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.52
LDB2O43679 GBGT1-203ENST00000372040 1980 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
LDB2O43679 GPS1-201ENST00000306823 1842 ntAPPRIS P3 TSL 1 (best) BASIC18.27■□□□□ 0.52
LDB2O43679 ZNRF3-203ENST00000544604 6851 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.52
LDB2O43679 TADA3-201ENST00000301964 2355 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
LDB2O43679 ZBED3-AS1-208ENST00000512001 1668 ntTSL 3 BASIC18.27■□□□□ 0.52
LDB2O43679 AC090206.1-201ENST00000615734 1678 ntTSL 5 BASIC18.27■□□□□ 0.52
LDB2O43679 VIPR1-201ENST00000325123 2773 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
LDB2O43679 PRRC2A-201ENST00000376007 6861 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
LDB2O43679 KIFC3-201ENST00000379655 3427 ntAPPRIS P3 TSL 1 (best) BASIC18.27■□□□□ 0.51
LDB2O43679 TRABD-201ENST00000303434 2329 ntAPPRIS P3 TSL 1 (best) BASIC18.27■□□□□ 0.51
LDB2O43679 PTPRE-201ENST00000254667 5331 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
LDB2O43679 MON1B-202ENST00000439557 1759 ntTSL 2 BASIC18.27■□□□□ 0.51
LDB2O43679 DDX42-216ENST00000583590 4148 ntAPPRIS P1 TSL 5 BASIC18.26■□□□□ 0.51
LDB2O43679 DACT2-201ENST00000366795 2942 ntAPPRIS P3 TSL 2 BASIC18.26■□□□□ 0.51
LDB2O43679 HOXC6-202ENST00000394331 2943 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
LDB2O43679 RUVBL1-202ENST00000464873 2126 ntTSL 2 BASIC18.26■□□□□ 0.51
LDB2O43679 SLC35A3-217ENST00000639807 2767 ntTSL 5 BASIC18.26■□□□□ 0.51
LDB2O43679 VPS37B-201ENST00000267202 3028 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
LDB2O43679 SEPT2-208ENST00000407971 3267 ntTSL 5 BASIC18.26■□□□□ 0.51
LDB2O43679 SDF4-201ENST00000263741 2079 ntAPPRIS P3 TSL 1 (best) BASIC18.26■□□□□ 0.51
LDB2O43679 SEPHS1-206ENST00000545675 2988 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
LDB2O43679 KLK14-201ENST00000156499 1060 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
LDB2O43679 BEX3-204ENST00000372645 913 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
LDB2O43679 MLLT10-205ENST00000377100 1136 ntTSL 2 BASIC18.26■□□□□ 0.51
LDB2O43679 PRICKLE4-202ENST00000394260 1035 ntAPPRIS ALT2 TSL 2 BASIC18.26■□□□□ 0.51
LDB2O43679 PRICKLE4-203ENST00000394263 1155 ntAPPRIS P2 TSL 5 BASIC18.26■□□□□ 0.51
LDB2O43679 AC104076.2-201ENST00000448912 469 ntBASIC18.26■□□□□ 0.51
LDB2O43679 ABHD14B-208ENST00000525795 980 ntAPPRIS P1 TSL 3 BASIC18.26■□□□□ 0.51
LDB2O43679 CENPX-206ENST00000580435 710 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
LDB2O43679 C16orf74-207ENST00000602914 761 ntAPPRIS ALT2 TSL 2 BASIC18.26■□□□□ 0.51
LDB2O43679 NDUFAB1-201ENST00000007516 717 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
LDB2O43679 CHTF8-203ENST00000448552 2903 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
LDB2O43679 STARD10-218ENST00000543304 1513 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
LDB2O43679 RELL2-201ENST00000297164 2520 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
LDB2O43679 MID1IP1-201ENST00000336949 2536 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
LDB2O43679 WNT9B-201ENST00000290015 1376 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
LDB2O43679 IRF3-203ENST00000377139 1613 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
LDB2O43679 CCDC88C-203ENST00000389856 1641 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
LDB2O43679 SPACA1-201ENST00000237201 1499 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
LDB2O43679 SP7-203ENST00000537210 1472 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
LDB2O43679 HNF1A-202ENST00000400024 2337 ntTSL 2 BASIC18.26■□□□□ 0.51
LDB2O43679 BEGAIN-211ENST00000637646 2911 ntTSL 5 BASIC18.26■□□□□ 0.51
LDB2O43679 GUCA1A-202ENST00000372958 1575 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
LDB2O43679 MFSD2A-203ENST00000420632 1914 ntTSL 2 BASIC18.25■□□□□ 0.51
LDB2O43679 CBFA2T2-201ENST00000342704 2864 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
LDB2O43679 SMARCD3-202ENST00000356800 1669 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
LDB2O43679 RNPS1-219ENST00000566397 1685 ntTSL 2 BASIC18.25■□□□□ 0.51
LDB2O43679 IL17RC-201ENST00000295981 2621 ntAPPRIS P4 TSL 2 BASIC18.25■□□□□ 0.51
LDB2O43679 FGFR1-203ENST00000341462 6054 ntTSL 5 BASIC18.25■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 83.7 ms