RNA–Protein interactions for RNA: ENST00000556102.6

CDKN3-209, Transcript of cyclin dependent kinase inhibitor 3, humanhuman

TSL 5 BASIC

Gene CDKN3, Length 938 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDKN3-209ENST00000556102 NISCHQ9Y2I1 1504 aa47.18■■■■■ 5.14
CDKN3-209ENST00000556102 CCDC180Q9P1Z9 1646 aa42.36■■■■■ 4.37
CDKN3-209ENST00000556102 ABCC9O60706 1549 aa42.21■■■■■ 4.35
CDKN3-209ENST00000556102 RB1CC1Q8TDY2 1594 aa40.26■■■■■ 4.04
CDKN3-209ENST00000556102 NACADO15069 1562 aa40.01■■■■□ 3.99
CDKN3-209ENST00000556102 DCAF8L2P0C7V8 631 aa39.71■■■■□ 3.95
CDKN3-209ENST00000556102 DNAJC5BQ9UF47 199 aa39.5■■■■□ 3.91
CDKN3-209ENST00000556102 MYO15BQ96JP2 1530 aa39.5■■■■□ 3.91
CDKN3-209ENST00000556102 UNC13AQ9UPW8 1703 aa39.37■■■■□ 3.89
CDKN3-209ENST00000556102 PABPN1Q86U42 306 aaKnown RBP eCLIP39.28■■■■□ 3.88
CDKN3-209ENST00000556102 ZCCHC6Q5VYS8 1495 aaKnown RBP39.13■■■■□ 3.85
CDKN3-209ENST00000556102 BICRAQ9NZM4 1560 aa39.08■■■■□ 3.85
CDKN3-209ENST00000556102 DCAF1Q9Y4B6 1507 aa39.01■■■■□ 3.84
CDKN3-209ENST00000556102 SHROOM4Q9ULL8 1493 aa38.6■■■■□ 3.77
CDKN3-209ENST00000556102 SCRIBQ14160 1630 aa38.55■■■■□ 3.76
CDKN3-209ENST00000556102 CC2D2AQ9P2K1 1620 aa38.16■■■■□ 3.7
CDKN3-209ENST00000556102 EIF4G1Q04637 1599 aaKnown RBP38.1■■■■□ 3.69
CDKN3-209ENST00000556102 CECR2Q9BXF3 1484 aa38.03■■■■□ 3.68
CDKN3-209ENST00000556102 NCAPD3P42695 1498 aa36.91■■■■□ 3.5
CDKN3-209ENST00000556102 SMARCA4P51532 1647 aa36.8■■■■□ 3.48
CDKN3-209ENST00000556102 ATAD2BQ9ULI0 1458 aa36.8■■■■□ 3.48
CDKN3-209ENST00000556102 SMARCA2P51531 1590 aa36.74■■■■□ 3.47
CDKN3-209ENST00000556102 HMGXB3Q12766 1538 aa36.67■■■■□ 3.46
CDKN3-209ENST00000556102 BAZ1AQ9NRL2 1556 aaPredicted RBP36.63■■■■□ 3.45
CDKN3-209ENST00000556102 PEG3Q9GZU2 1588 aa36.46■■■■□ 3.43
CDKN3-209ENST00000556102 ERCC6Q03468 1493 aa36.46■■■■□ 3.43
CDKN3-209ENST00000556102 BAZ1BQ9UIG0 1483 aaKnown RBP36.45■■■■□ 3.43
CDKN3-209ENST00000556102 CUX2O14529 1486 aa36.4■■■■□ 3.42
CDKN3-209ENST00000556102 MROH2BQ7Z745 1585 aa36.34■■■■□ 3.41
CDKN3-209ENST00000556102 NESP48681 1621 aa36.28■■■■□ 3.4
CDKN3-209ENST00000556102 DNAJC5Q9H3Z4 198 aa36.25■■■■□ 3.39
CDKN3-209ENST00000556102 LAMC3Q9Y6N6 1575 aa36.09■■■■□ 3.37
CDKN3-209ENST00000556102 THOC2Q8NI27 1593 aaKnown RBP35.95■■■■□ 3.35
CDKN3-209ENST00000556102 WIZO95785 1651 aa35.91■■■■□ 3.34
CDKN3-209ENST00000556102 KIF21AQ7Z4S6 1674 aa35.87■■■■□ 3.33
CDKN3-209ENST00000556102 PDS5BQ9NTI5 1447 aa35.86■■■■□ 3.33
CDKN3-209ENST00000556102 CADPSQ9ULU8 1353 aa35.78■■■■□ 3.32
CDKN3-209ENST00000556102 RSF1Q96T23 1441 aaPredicted RBP35.61■■■■□ 3.29
CDKN3-209ENST00000556102 MRC2Q9UBG0 1479 aa35.55■■■■□ 3.28
CDKN3-209ENST00000556102 TOP2AP11388 1531 aaKnown RBP35.49■■■■□ 3.27
CDKN3-209ENST00000556102 WDR62O43379 1518 aa35.47■■■■□ 3.27
CDKN3-209ENST00000556102 CEP164Q9UPV0 1460 aa35.42■■■■□ 3.26
CDKN3-209ENST00000556102 CFTRP13569 1480 aa35.4■■■■□ 3.26
CDKN3-209ENST00000556102 FANCD2Q9BXW9 1451 aa35.38■■■■□ 3.25
CDKN3-209ENST00000556102 PRDM2Q13029 1718 aa35.12■■■■□ 3.21
CDKN3-209ENST00000556102 URB2Q14146 1524 aaKnown RBP35.09■■■■□ 3.21
CDKN3-209ENST00000556102 CCDC88BA6NC98 1476 aa35.05■■■■□ 3.2
CDKN3-209ENST00000556102 TOPBP1Q92547 1522 aa34.72■■■■□ 3.15
CDKN3-209ENST00000556102 IFT140Q96RY7 1462 aa34.71■■■■□ 3.15
CDKN3-209ENST00000556102 OSCARQ8IYS5 282 aa34.7■■■■□ 3.15
CDKN3-209ENST00000556102 ABCC8Q09428 1581 aa34.68■■■■□ 3.14
CDKN3-209ENST00000556102 TRIM41Q8WV44 630 aa34.67■■■■□ 3.14
CDKN3-209ENST00000556102 DNMBPQ6XZF7 1577 aa34.62■■■■□ 3.13
CDKN3-209ENST00000556102 ZNF608Q9ULD9 1512 aaPredicted RBP34.62■■■■□ 3.13
CDKN3-209ENST00000556102 EIF4G3O43432 1585 aaKnown RBP34.48■■■■□ 3.11
CDKN3-209ENST00000556102 TARBP1Q13395 1621 aaKnown RBP34.42■■■■□ 3.1
CDKN3-209ENST00000556102 POLA1P09884 1462 aaPredicted RBP34.38■■■■□ 3.09
CDKN3-209ENST00000556102 AQRO60306 1485 aaKnown RBP eCLIP34.32■■■■□ 3.08
CDKN3-209ENST00000556102 RIMBP3CA6NJZ7 1639 aa34.29■■■■□ 3.08
CDKN3-209ENST00000556102 RIMBP3BA6NNM3 1639 aa34.29■■■■□ 3.08
CDKN3-209ENST00000556102 RIMBP3Q9UFD9 1639 aa34.29■■■■□ 3.08
CDKN3-209ENST00000556102 RAD54L2Q9Y4B4 1467 aa34.22■■■■□ 3.07
CDKN3-209ENST00000556102 CHD1O14646 1710 aa34.21■■■■□ 3.07
CDKN3-209ENST00000556102 SOGA1O94964 1423 aa34.2■■■■□ 3.06
CDKN3-209ENST00000556102 ARHGEF11O15085 1522 aa34.18■■■■□ 3.06
CDKN3-209ENST00000556102 FGD5Q6ZNL6 1462 aa34.16■■■■□ 3.06
CDKN3-209ENST00000556102 CUX1P39880 1505 aa34.14■■■■□ 3.06
CDKN3-209ENST00000556102 WDR97A6NE52 1622 aa34.12■■■■□ 3.05
CDKN3-209ENST00000556102 TDRD9Q8NDG6 1382 aaKnown RBP34.11■■■■□ 3.05
CDKN3-209ENST00000556102 FBLN2P98095 1184 aa34.05■■■■□ 3.04
CDKN3-209ENST00000556102 SUPT5HO00267 1087 aaKnown RBP34.04■■■■□ 3.04
CDKN3-209ENST00000556102 SNAPC4Q5SXM2 1469 aa33.99■■■■□ 3.03
CDKN3-209ENST00000556102 MAGI1Q96QZ7 1491 aaPredicted RBP33.93■■■■□ 3.02
CDKN3-209ENST00000556102 GRIN2BQ13224 1484 aa33.92■■■■□ 3.02
CDKN3-209ENST00000556102 CYB5RLQ6IPT4 315 aa33.87■■■■□ 3.01
CDKN3-209ENST00000556102 ARAP1Q96P48 1450 aa33.84■■■■□ 3.01
CDKN3-209ENST00000556102 CHMP7Q8WUX9 453 aaPredicted RBP33.84■■■■□ 3.01
CDKN3-209ENST00000556102 PBRM1Q86U86 1689 aa33.82■■■■□ 3
CDKN3-209ENST00000556102 CLASP1Q7Z460 1538 aa33.82■■■■□ 3
CDKN3-209ENST00000556102 SYNJ1O43426 1573 aa33.81■■■■□ 3
CDKN3-209ENST00000556102 SYNJ2O15056 1496 aa33.8■■■■□ 3
CDKN3-209ENST00000556102 GAPVD1Q14C86 1478 aa33.8■■■■□ 3
CDKN3-209ENST00000556102 ABCA10Q8WWZ4 1543 aa33.79■■■■□ 3
CDKN3-209ENST00000556102 ABCA5Q8WWZ7 1642 aa33.75■■■□□ 2.99
CDKN3-209ENST00000556102 WRNQ14191 1432 aaPredicted RBP eCLIP33.66■■■□□ 2.98
CDKN3-209ENST00000556102 BIVM-ERCC5R4GMW8 1640 aa33.65■■■□□ 2.98
CDKN3-209ENST00000556102 TOP2BQ02880 1626 aa33.64■■■□□ 2.98
CDKN3-209ENST00000556102 ADAMTS12P58397 1594 aa33.49■■■□□ 2.95
CDKN3-209ENST00000556102 GRIN2AQ12879 1464 aa33.49■■■□□ 2.95
CDKN3-209ENST00000556102 TRHP20396 242 aaPredicted RBP33.47■■■□□ 2.95
CDKN3-209ENST00000556102 ERICH3Q5RHP9 1530 aa33.38■■■□□ 2.93
CDKN3-209ENST00000556102 FHAD1B1AJZ9 1412 aa33.38■■■□□ 2.93
CDKN3-209ENST00000556102 NUP160Q12769 1436 aa33.37■■■□□ 2.93
CDKN3-209ENST00000556102 CEP170Q5SW79 1584 aa33.36■■■□□ 2.93
CDKN3-209ENST00000556102 ERCC6L2Q5T890 1561 aa33.26■■■□□ 2.92
CDKN3-209ENST00000556102 SHROOM2Q13796 1616 aa33.24■■■□□ 2.91
CDKN3-209ENST00000556102 PRG4Q92954 1404 aaPredicted RBP33.02■■■□□ 2.88
CDKN3-209ENST00000556102 RUSC2Q8N2Y8 1516 aa33.02■■■□□ 2.88
CDKN3-209ENST00000556102 JPH4Q96JJ6 628 aa32.99■■■□□ 2.87
CDKN3-209ENST00000556102 KIF27Q86VH2 1401 aa32.96■■■□□ 2.87
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms