Protein–RNA interactions for Protein: Q92900

UPF1, Regulator of nonsense transcripts 1, humanhuman

Known RBP eCLIP

Length 1,129 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1Q92900 ZNF589-205ENST00000448461 4703 ntTSL 210.32□□□□□ -0.766e-7■■■□□ 15.1
UPF1Q92900 FBXL20-205ENST00000583610 1739 ntAPPRIS P1 TSL 2 BASIC23.08■■□□□ 1.283e-8■■■□□ 15.1
UPF1Q92900 CCDC97-201ENST00000269967 3322 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.235e-9■■■□□ 15.1
UPF1Q92900 SIKE1-201ENST00000060969 2190 ntAPPRIS P3 TSL 1 (best) BASIC20.95■□□□□ 0.944e-9■■■□□ 15.1
UPF1Q92900 FECH-201ENST00000262093 3853 ntAPPRIS P3 TSL 1 (best) BASIC15.09■□□□□ 0.014e-9■■■□□ 15.1
UPF1Q92900 FECH-202ENST00000382873 2526 ntAPPRIS ALT2 TSL 2 BASIC14.82□□□□□ -0.044e-9■■■□□ 15.1
UPF1Q92900 EIF5-207ENST00000558800 552 ntTSL 28.25□□□□□ -1.094e-9■■■□□ 15.1
UPF1Q92900 UBE2M-201ENST00000253023 1508 ntAPPRIS P1 TSL 1 (best) BASIC39.86■■■■□ 3.974e-14■■■□□ 15.1
UPF1Q92900 SELENOW-202ENST00000593892 550 ntAPPRIS P1 TSL 3 BASIC20.03■□□□□ 0.82e-8■■■□□ 15.1
UPF1Q92900 SSBP3-216ENST00000610401 3168 ntTSL 5 BASIC19.69■□□□□ 0.745e-9■■■□□ 15.1
UPF1Q92900 SSBP3-201ENST00000326956 2913 ntTSL 214.03□□□□□ -0.165e-9■■■□□ 15.1
UPF1Q92900 MGAT3-201ENST00000341184 5062 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.937e-7■■■□□ 15.1
UPF1Q92900 ADAMTSL4-206ENST00000489159 1803 ntTSL 219.7■□□□□ 0.745e-14■■■□□ 15.1
UPF1Q92900 ADAMTSL4-201ENST00000271643 4250 ntAPPRIS P3 TSL 5 BASIC14.57□□□□□ -0.085e-14■■■□□ 15.1
UPF1Q92900 ADAMTSL4-203ENST00000369039 4319 ntAPPRIS ALT2 TSL 5 BASIC13.86□□□□□ -0.195e-14■■■□□ 15.1
UPF1Q92900 ADAMTSL4-202ENST00000369038 4167 ntAPPRIS P3 TSL 1 (best) BASIC12.55□□□□□ -0.45e-14■■■□□ 15.1
UPF1Q92900 FAM53C-211ENST00000513056 923 ntTSL 1 (best) BASIC27.79■■■□□ 2.045e-9■■■□□ 15.1
UPF1Q92900 TMEM150A-202ENST00000334462 1518 ntAPPRIS P1 TSL 1 (best) BASIC32.6■■■□□ 2.815e-8■■■□□ 15.1
UPF1Q92900 TARDBP-228ENST00000629725 1031 ntTSL 5 BASIC31.12■■■□□ 2.572e-11■■■□□ 15.1
UPF1Q92900 TMEM150A-201ENST00000306353 1484 ntTSL 1 (best) BASIC30.86■■■□□ 2.535e-8■■■□□ 15.1
UPF1Q92900 TMEM150A-209ENST00000444380 1810 ntTSL 530.39■■■□□ 2.465e-8■■■□□ 15.1
UPF1Q92900 HIP1R-208ENST00000537322 665 ntTSL 326.51■■□□□ 1.835e-8■■■□□ 15.1
UPF1Q92900 TARDBP-225ENST00000621715 816 ntTSL 325.55■■□□□ 1.682e-11■■■□□ 15.1
UPF1Q92900 BRD2-209ENST00000469132 1628 ntTSL 225.45■■□□□ 1.675e-8■■■□□ 15.1
UPF1Q92900 TARDBP-203ENST00000439080 1388 ntTSL 222.65■■□□□ 1.222e-11■■■□□ 15.1
UPF1Q92900 TARDBP-204ENST00000472476 1001 ntTSL 522.02■■□□□ 1.122e-11■■■□□ 15.1
UPF1Q92900 TMEM150A-207ENST00000431593 2323 ntTSL 221.95■■□□□ 1.15e-8■■■□□ 15.1
UPF1Q92900 TARDBP-231ENST00000639599 1283 ntTSL 521.68■■□□□ 1.062e-11■■■□□ 15.1
UPF1Q92900 TMEM150A-203ENST00000409668 1776 ntAPPRIS P1 TSL 2 BASIC21.61■■□□□ 1.055e-8■■■□□ 15.1
UPF1Q92900 HIP1R-205ENST00000536617 1616 ntTSL 221.49■■□□□ 1.035e-8■■■□□ 15.1
UPF1Q92900 ANAPC16-203ENST00000478193 734 ntTSL 220.55■□□□□ 0.885e-8■■■□□ 15.1
UPF1Q92900 CFLAR-214ENST00000443227 1679 ntTSL 2 BASIC19.89■□□□□ 0.772e-11■■■□□ 15.1
UPF1Q92900 CFLAR-208ENST00000423241 2128 ntAPPRIS P3 TSL 1 (best) BASIC19.6■□□□□ 0.732e-11■■■□□ 15.1
UPF1Q92900 HIP1R-203ENST00000535012 924 ntTSL 318.64■□□□□ 0.575e-8■■■□□ 15.1
UPF1Q92900 MSL1-202ENST00000398532 4707 ntTSL 1 (best) BASIC18.18■□□□□ 0.55e-8■■■□□ 15.1
UPF1Q92900 HIP1R-201ENST00000253083 4539 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.275e-8■■■□□ 15.1
UPF1Q92900 TARDBP-221ENST00000619555 682 ntTSL 516.55■□□□□ 0.242e-11■■■□□ 15.1
UPF1Q92900 RCAN3-202ENST00000374395 6802 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.115e-8■■■□□ 15.1
UPF1Q92900 TARDBP-229ENST00000638264 774 ntTSL 1 (best) BASIC14.93□□□□□ -0.022e-11■■■□□ 15.1
UPF1Q92900 TARDBP-226ENST00000621790 1008 ntTSL 5 BASIC14.7□□□□□ -0.062e-11■■■□□ 15.1
UPF1Q92900 TARDBP-217ENST00000616545 920 ntTSL 5 BASIC14.7□□□□□ -0.062e-11■■■□□ 15.1
UPF1Q92900 TARDBP-223ENST00000620632 706 ntTSL 314.69□□□□□ -0.062e-11■■■□□ 15.1
UPF1Q92900 TARDBP-202ENST00000315091 1835 ntTSL 5 BASIC14.49□□□□□ -0.092e-11■■■□□ 15.1
UPF1Q92900 CFLAR-204ENST00000341582 2056 ntAPPRIS ALT2 TSL 1 (best) BASIC14.42□□□□□ -0.12e-11■■■□□ 15.1
UPF1Q92900 TARDBP-211ENST00000610369 563 ntTSL 514□□□□□ -0.172e-11■■■□□ 15.1
UPF1Q92900 TARDBP-218ENST00000617172 980 ntTSL 514□□□□□ -0.172e-11■■■□□ 15.1
UPF1Q92900 TARDBP-227ENST00000622057 706 ntTSL 513.89□□□□□ -0.192e-11■■■□□ 15.1
UPF1Q92900 TMEM150A-212ENST00000463363 776 ntTSL 213.89□□□□□ -0.195e-8■■■□□ 15.1
UPF1Q92900 BRD2-203ENST00000395287 3467 ntAPPRIS ALT2 TSL 1 (best) BASIC13.44□□□□□ -0.265e-8■■■□□ 15.1
UPF1Q92900 TARDBP-201ENST00000240185 5367 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.272e-11■■■□□ 15.1
UPF1Q92900 AIG1-202ENST00000357847 1395 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.298e-18■■■□□ 15.1
UPF1Q92900 TARDBP-206ENST00000473869 1946 ntTSL 513.21□□□□□ -0.292e-11■■■□□ 15.1
UPF1Q92900 TMEM94-209ENST00000579208 3543 ntTSL 5 BASIC12.99□□□□□ -0.332e-11■■■□□ 15.1
UPF1Q92900 BRD2-204ENST00000449025 3210 ntAPPRIS ALT2 TSL 1 (best)12.49□□□□□ -0.415e-8■■■□□ 15.1
UPF1Q92900 BRD2-205ENST00000449085 3210 ntAPPRIS ALT2 TSL 1 (best) BASIC12.49□□□□□ -0.415e-8■■■□□ 15.1
UPF1Q92900 ANAPC16-202ENST00000470481 1828 ntTSL 1 (best)12.41□□□□□ -0.423e-13■■■□□ 15.1
UPF1Q92900 TARDBP-230ENST00000639083 2269 ntAPPRIS P1 TSL 5 BASIC12.11□□□□□ -0.472e-11■■■□□ 15.1
UPF1Q92900 AL109811.4-201ENST00000614757 1793 ntTSL 5 BASIC11.54□□□□□ -0.562e-11■■■□□ 15.1
UPF1Q92900 TARDBP-213ENST00000611963 739 ntTSL 510.74□□□□□ -0.692e-11■■■□□ 15.1
UPF1Q92900 TARDBP-216ENST00000614494 515 ntTSL 510.68□□□□□ -0.72e-11■■■□□ 15.1
UPF1Q92900 TARDBP-208ENST00000477447 409 ntTSL 57.87□□□□□ -1.152e-11■■■□□ 15.1
UPF1Q92900 AL109811.4-202ENST00000611136 700 ntTSL 57.48□□□□□ -1.212e-11■■■□□ 15.1
UPF1Q92900 ISY1-RAB43-201ENST00000418265 4868 ntAPPRIS P1 TSL 2 BASIC14.33□□□□□ -0.111e-6■■■□□ 15.1
UPF1Q92900 KLHDC10-201ENST00000335420 6437 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.472e-7■■■□□ 15.1
UPF1Q92900 URB1-201ENST00000382751 10832 ntAPPRIS P1 TSL 1 (best) BASIC8.28□□□□□ -1.081e-6■■■□□ 15.1
UPF1Q92900 NID1-202ENST00000366595 5412 ntTSL 1 (best) BASIC16.28■□□□□ 0.23e-8■■■□□ 15
UPF1Q92900 NID1-201ENST00000264187 5864 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.043e-8■■■□□ 15
UPF1Q92900 ARPC4-203ENST00000433034 926 ntTSL 3 BASIC23.1■■□□□ 1.295e-44■■■□□ 15
UPF1Q92900 RNPEPL1-203ENST00000451363 538 ntTSL 420.84■□□□□ 0.936e-8■■■□□ 15
UPF1Q92900 SLC1A4-204ENST00000493121 766 ntTSL 520.01■□□□□ 0.799e-7■■■□□ 15
UPF1Q92900 SLC1A4-202ENST00000471551 461 ntTSL 418.06■□□□□ 0.489e-7■■■□□ 15
UPF1Q92900 SCARNA2-201ENST00000458748 420 ntBASIC25.18■■□□□ 1.621e-323■■■□□ 15
UPF1Q92900 AL356488.2-201ENST00000602755 427 ntBASIC25.18■■□□□ 1.621e-323■■■□□ 15
UPF1Q92900 ZC3H7B-202ENST00000486331 5262 ntTSL 213.29□□□□□ -0.284e-9■■■□□ 15
UPF1Q92900 MECP2-201ENST00000303391 10505 ntAPPRIS P1 TSL 1 (best) BASIC10.52□□□□□ -0.722e-7■■■□□ 15
UPF1Q92900 TMEM41A-207ENST00000484062 743 ntTSL 314.04□□□□□ -0.162e-7■■■□□ 15
UPF1Q92900 RAC1-201ENST00000348035 2323 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.855e-8■■■□□ 15
UPF1Q92900 ESPN-202ENST00000416731 1338 ntTSL 5 BASIC26.8■■□□□ 1.881e-8■■■□□ 15
UPF1Q92900 CD68-203ENST00000584180 891 ntTSL 212.86□□□□□ -0.351e-10■■■□□ 15
UPF1Q92900 UCP2-203ENST00000539330 608 ntTSL 214.59□□□□□ -0.072e-6■■■□□ 15
UPF1Q92900 UCP2-206ENST00000542615 538 ntTSL 314.59□□□□□ -0.072e-6■■■□□ 15
UPF1Q92900 UCP2-205ENST00000541027 536 ntTSL 414.59□□□□□ -0.072e-6■■■□□ 15
UPF1Q92900 GDI2-203ENST00000380191 2412 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.453e-13■■■□□ 15
UPF1Q92900 GDI2-207ENST00000479928 2499 ntTSL 210.97□□□□□ -0.653e-13■■■□□ 15
UPF1Q92900 ZC3HAV1-203ENST00000464606 4776 ntAPPRIS ALT2 TSL 5 BASIC14.13□□□□□ -0.153e-7■■■□□ 15
UPF1Q92900 AGO2-201ENST00000220592 14581 ntAPPRIS P1 TSL 1 (best) BASIC5.5□□□□□ -1.532e-9■■■□□ 15
UPF1Q92900 SEMA4G-203ENST00000476171 393 ntTSL 317.07■□□□□ 0.325e-8■■■□□ 15
UPF1Q92900 SEMA4G-202ENST00000370250 3596 ntAPPRIS ALT1 TSL 5 BASIC11.22□□□□□ -0.615e-8■■■□□ 15
UPF1Q92900 ESPN-214ENST00000633239 1494 ntTSL 524.18■■□□□ 1.461e-7■■■□□ 15
UPF1Q92900 CENPN-203ENST00000393335 1556 ntTSL 2 BASIC10.33□□□□□ -0.765e-7■■■□□ 15
UPF1Q92900 ZNF106-211ENST00000569648 788 ntTSL 315.63■□□□□ 0.096e-7■■■□□ 15
UPF1Q92900 NUDT3-201ENST00000607016 9905 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.335e-9■■■□□ 15
UPF1Q92900 RPS10-NUDT3-202ENST00000639725 4782 ntAPPRIS P1 TSL 5 BASIC10.04□□□□□ -0.86e-9■■■□□ 15
UPF1Q92900 SZRD1-205ENST00000472461 843 ntTSL 324.23■■□□□ 1.472e-10■■■□□ 15
UPF1Q92900 STX17-212ENST00000534052 2424 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.712e-6■■■□□ 15
UPF1Q92900 STX17-205ENST00000525640 2523 ntAPPRIS P1 TSL 2 BASIC17.4■□□□□ 0.382e-6■■■□□ 15
UPF1Q92900 CEACAM1-207ENST00000403444 3427 ntAPPRIS ALT2 TSL 1 (best) BASIC7.42□□□□□ -1.223e-7■■■□□ 14.9
UPF1Q92900 CEACAM1-203ENST00000352591 3170 ntTSL 1 (best) BASIC6.92□□□□□ -1.33e-7■■■□□ 14.9
UPF1Q92900 CEACAM1-201ENST00000161559 3519 ntAPPRIS P3 TSL 1 (best) BASIC6.17□□□□□ -1.423e-7■■■□□ 14.9
UPF1Q92900 SH3D21-203ENST00000480549 3182 ntTSL 218.43■□□□□ 0.541e-6■■■□□ 14.9
Retrieved 100 of 15,879 protein–RNA pairs in 135.2 ms