RNA–Protein interactions for RNA: ENST00000326956.11

SSBP3-201, Transcript of single stranded DNA binding protein 3, humanhuman

TSL 2

Gene SSBP3, Length 2,913 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSBP3-201ENST00000326956 NISCHQ9Y2I1 1504 aa28.87■■■□□ 2.21
SSBP3-201ENST00000326956 SHROOM4Q9ULL8 1493 aa25.13■■□□□ 1.61
SSBP3-201ENST00000326956 SUPT5HO00267 1087 aaKnown RBP24.89■■□□□ 1.58
SSBP3-201ENST00000326956 ZCCHC6Q5VYS8 1495 aaKnown RBP24.46■■□□□ 1.51
SSBP3-201ENST00000326956 CCDC180Q9P1Z9 1646 aa24.27■■□□□ 1.48
SSBP3-201ENST00000326956 CHIC1Q5VXU3 224 aa24.26■■□□□ 1.47
SSBP3-201ENST00000326956 HRCP23327 699 aa24.23■■□□□ 1.47
SSBP3-201ENST00000326956 DCAF8L2P0C7V8 631 aa24.21■■□□□ 1.47
SSBP3-201ENST00000326956 MYO15BQ96JP2 1530 aa24.14■■□□□ 1.45
SSBP3-201ENST00000326956 PCGF6Q9BYE7 350 aa24.03■■□□□ 1.44
SSBP3-201ENST00000326956 PPARGC1BQ86YN6 1023 aaKnown RBP23.66■■□□□ 1.38
SSBP3-201ENST00000326956 DCAF1Q9Y4B6 1507 aa23.65■■□□□ 1.38
SSBP3-201ENST00000326956 LOC105371045A0A1W2PR82 267 aa23.61■■□□□ 1.37
SSBP3-201ENST00000326956 TRIM26Q12899 539 aaPredicted RBP23.44■■□□□ 1.34
SSBP3-201ENST00000326956 ZEB1P37275 1124 aaPredicted RBP23.17■■□□□ 1.3
SSBP3-201ENST00000326956 ABCC9O60706 1549 aa23.15■■□□□ 1.3
SSBP3-201ENST00000326956 TRIM41Q8WV44 630 aa23.14■■□□□ 1.3
SSBP3-201ENST00000326956 RSF1Q96T23 1441 aaPredicted RBP23.03■■□□□ 1.28
SSBP3-201ENST00000326956 FAM9AQ8IZU1 332 aaPredicted RBP23.02■■□□□ 1.28
SSBP3-201ENST00000326956 SCRIBQ14160 1630 aa22.96■■□□□ 1.27
SSBP3-201ENST00000326956 EHMT2Q96KQ7 1210 aa22.87■■□□□ 1.25
SSBP3-201ENST00000326956 RB1CC1Q8TDY2 1594 aa22.82■■□□□ 1.24
SSBP3-201ENST00000326956 PELP1Q8IZL8 1130 aaKnown RBP22.71■■□□□ 1.23
SSBP3-201ENST00000326956 SCAF1Q9H7N4 1312 aaKnown RBP22.54■■□□□ 1.2
SSBP3-201ENST00000326956 CECR2Q9BXF3 1484 aa22.52■■□□□ 1.2
SSBP3-201ENST00000326956 CCER1Q8TC90 406 aaPredicted RBP22.5■■□□□ 1.19
SSBP3-201ENST00000326956 MROH2BQ7Z745 1585 aa22.47■■□□□ 1.19
SSBP3-201ENST00000326956 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP22.45■■□□□ 1.18
SSBP3-201ENST00000326956 NACADO15069 1562 aa22.43■■□□□ 1.18
SSBP3-201ENST00000326956 WIZO95785 1651 aa22.36■■□□□ 1.17
SSBP3-201ENST00000326956 ACIN1Q9UKV3 1341 aaKnown RBP22.26■■□□□ 1.15
SSBP3-201ENST00000326956 TTBK1Q5TCY1 1321 aaPredicted RBP22.24■■□□□ 1.15
SSBP3-201ENST00000326956 BAZ1AQ9NRL2 1556 aaPredicted RBP22.23■■□□□ 1.15
SSBP3-201ENST00000326956 DIEXFQ68CQ4 756 aaKnown RBP22.22■■□□□ 1.15
SSBP3-201ENST00000326956 CENPBP07199 599 aaPredicted RBP22.21■■□□□ 1.15
SSBP3-201ENST00000326956 NEUROD1Q13562 356 aa22.17■■□□□ 1.14
SSBP3-201ENST00000326956 WRNQ14191 1432 aaPredicted RBP eCLIP22.09■■□□□ 1.13
SSBP3-201ENST00000326956 EIF4G1Q04637 1599 aaKnown RBP22.09■■□□□ 1.13
SSBP3-201ENST00000326956 CEP162Q5TB80 1403 aa22.08■■□□□ 1.12
SSBP3-201ENST00000326956 ABCC8Q09428 1581 aa22.05■■□□□ 1.12
SSBP3-201ENST00000326956 GTF3C3Q9Y5Q9 886 aa22.05■■□□□ 1.12
SSBP3-201ENST00000326956 CCDC88BA6NC98 1476 aa22.05■■□□□ 1.12
SSBP3-201ENST00000326956 UBTFP17480 764 aaKnown RBP22.05■■□□□ 1.12
SSBP3-201ENST00000326956 TOP2AP11388 1531 aaKnown RBP22.01■■□□□ 1.11
SSBP3-201ENST00000326956 TNIKQ9UKE5 1360 aa22■■□□□ 1.11
SSBP3-201ENST00000326956 CSRNP3Q8WYN3 585 aa21.97■■□□□ 1.11
SSBP3-201ENST00000326956 SOGA1O94964 1423 aa21.96■■□□□ 1.11
SSBP3-201ENST00000326956 EEA1Q15075 1411 aa21.94■■□□□ 1.1
SSBP3-201ENST00000326956 ZNF316A6NFI3 1004 aaPredicted RBP21.93■■□□□ 1.1
SSBP3-201ENST00000326956 SMARCA4P51532 1647 aa21.89■■□□□ 1.09
SSBP3-201ENST00000326956 SMARCA2P51531 1590 aa21.89■■□□□ 1.09
SSBP3-201ENST00000326956 GOLGA3Q08378 1498 aa21.82■■□□□ 1.08
SSBP3-201ENST00000326956 YTHDC1Q96MU7 727 aaKnown RBP21.79■■□□□ 1.08
SSBP3-201ENST00000326956 RUSC2Q8N2Y8 1516 aa21.79■■□□□ 1.08
SSBP3-201ENST00000326956 HNRNPUL2Q1KMD3 747 aaKnown RBP21.77■■□□□ 1.08
SSBP3-201ENST00000326956 APLP2Q06481 763 aa21.73■■□□□ 1.07
SSBP3-201ENST00000326956 MYT1Q01538 1121 aa21.73■■□□□ 1.07
SSBP3-201ENST00000326956 UNC13AQ9UPW8 1703 aa21.72■■□□□ 1.07
SSBP3-201ENST00000326956 CEP164Q9UPV0 1460 aa21.65■■□□□ 1.06
SSBP3-201ENST00000326956 MIER1Q8N108 512 aa21.63■■□□□ 1.05
SSBP3-201ENST00000326956 CLIP1P30622 1438 aa21.62■■□□□ 1.05
SSBP3-201ENST00000326956 RANGAP1P46060 587 aaPredicted RBP21.55■■□□□ 1.04
SSBP3-201ENST00000326956 PABPN1Q86U42 306 aaKnown RBP eCLIP21.55■■□□□ 1.04
SSBP3-201ENST00000326956 VPS8Q8N3P4 1428 aa21.53■■□□□ 1.04
SSBP3-201ENST00000326956 KIF21BO75037 1637 aa21.52■■□□□ 1.04
SSBP3-201ENST00000326956 SYNJ1O43426 1573 aa21.46■■□□□ 1.03
SSBP3-201ENST00000326956 BICRAQ9NZM4 1560 aa21.44■■□□□ 1.02
SSBP3-201ENST00000326956 BAZ1BQ9UIG0 1483 aaKnown RBP21.44■■□□□ 1.02
SSBP3-201ENST00000326956 RAPGEF2Q9Y4G8 1499 aa21.39■■□□□ 1.02
SSBP3-201ENST00000326956 PEG3Q9GZU2 1588 aa21.37■■□□□ 1.01
SSBP3-201ENST00000326956 CLSPNQ9HAW4 1339 aa21.34■■□□□ 1.01
SSBP3-201ENST00000326956 ATAD2BQ9ULI0 1458 aa21.27■■□□□ 1
SSBP3-201ENST00000326956 DHX57Q6P158 1386 aaKnown RBP21.24■□□□□ 0.99
SSBP3-201ENST00000326956 TOP2BQ02880 1626 aa21.16■□□□□ 0.98
SSBP3-201ENST00000326956 KANK4Q5T7N3 995 aaPredicted RBP21.15■□□□□ 0.98
SSBP3-201ENST00000326956 ERICH3Q5RHP9 1530 aa21.12■□□□□ 0.97
SSBP3-201ENST00000326956 ARAP1Q96P48 1450 aa21.1■□□□□ 0.97
SSBP3-201ENST00000326956 SUPT16HQ9Y5B9 1047 aaKnown RBP21.1■□□□□ 0.97
SSBP3-201ENST00000326956 PRXQ9BXM0 1461 aa21.09■□□□□ 0.97
SSBP3-201ENST00000326956 ITGAEP38570 1179 aa21.09■□□□□ 0.97
SSBP3-201ENST00000326956 RRBP1Q9P2E9 1410 aaKnown RBP21.04■□□□□ 0.96
SSBP3-201ENST00000326956 BIVM-ERCC5R4GMW8 1640 aa21.03■□□□□ 0.96
SSBP3-201ENST00000326956 CCNB3Q8WWL7 1395 aa21.03■□□□□ 0.96
SSBP3-201ENST00000326956 KIF27Q86VH2 1401 aa21.02■□□□□ 0.96
SSBP3-201ENST00000326956 CUX2O14529 1486 aa20.92■□□□□ 0.94
SSBP3-201ENST00000326956 CUX1P39880 1505 aa20.89■□□□□ 0.93
SSBP3-201ENST00000326956 ARHGAP35Q9NRY4 1499 aa20.88■□□□□ 0.93
SSBP3-201ENST00000326956 RAB3GAP2Q9H2M9 1393 aa20.88■□□□□ 0.93
SSBP3-201ENST00000326956 TSHZ2Q9NRE2 1034 aa20.84■□□□□ 0.93
SSBP3-201ENST00000326956 KCNH8Q96L42 1107 aa20.81■□□□□ 0.92
SSBP3-201ENST00000326956 FAM50AQ14320 339 aaKnown RBP20.81■□□□□ 0.92
SSBP3-201ENST00000326956 DDX10Q13206 875 aaKnown RBP20.8■□□□□ 0.92
SSBP3-201ENST00000326956 SETD5Q9C0A6 1442 aa20.8■□□□□ 0.92
SSBP3-201ENST00000326956 BCANQ96GW7 911 aa20.77■□□□□ 0.92
SSBP3-201ENST00000326956 NCAPD3P42695 1498 aa20.77■□□□□ 0.92
SSBP3-201ENST00000326956 HMGXB3Q12766 1538 aa20.76■□□□□ 0.91
SSBP3-201ENST00000326956 ATP1B4Q9UN42 357 aaPredicted RBP20.75■□□□□ 0.91
SSBP3-201ENST00000326956 NEFLP07196 543 aa20.74■□□□□ 0.91
SSBP3-201ENST00000326956 MAPKBP1O60336 1514 aa20.74■□□□□ 0.91
SSBP3-201ENST00000326956 FKBP8Q14318 412 aa20.74■□□□□ 0.91
Retrieved 100 of 20,778 RNA–protein pairs in 11.1 ms