RNA–Protein interactions for RNA: ENST00000366595.7

NID1-202, Transcript of nidogen 1, humanhuman

TSL 1 (best) BASIC

Gene NID1, Length 5,412 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NID1-202ENST00000366595 PELP1Q8IZL8 1130 aaKnown RBP27.54■■■□□ 2
NID1-202ENST00000366595 DCAF8L2P0C7V8 631 aa27.5■■□□□ 1.99
NID1-202ENST00000366595 SUPT5HO00267 1087 aaKnown RBP26.42■■□□□ 1.82
NID1-202ENST00000366595 CCER1Q8TC90 406 aaPredicted RBP26.24■■□□□ 1.79
NID1-202ENST00000366595 ERICH6Q7L0X2 663 aa26.22■■□□□ 1.79
NID1-202ENST00000366595 MYT1Q01538 1121 aa26.21■■□□□ 1.79
NID1-202ENST00000366595 APLP2Q06481 763 aa26.04■■□□□ 1.76
NID1-202ENST00000366595 CENPBP07199 599 aaPredicted RBP25.97■■□□□ 1.75
NID1-202ENST00000366595 EHMT2Q96KQ7 1210 aa25.65■■□□□ 1.7
NID1-202ENST00000366595 ZEB1P37275 1124 aaPredicted RBP25.63■■□□□ 1.69
NID1-202ENST00000366595 FAM9AQ8IZU1 332 aaPredicted RBP25.62■■□□□ 1.69
NID1-202ENST00000366595 NEFLP07196 543 aa25.44■■□□□ 1.66
NID1-202ENST00000366595 SHROOM4Q9ULL8 1493 aa25.38■■□□□ 1.65
NID1-202ENST00000366595 PCGF6Q9BYE7 350 aa25.3■■□□□ 1.64
NID1-202ENST00000366595 YTHDC1Q96MU7 727 aaKnown RBP25.03■■□□□ 1.6
NID1-202ENST00000366595 TTBK1Q5TCY1 1321 aaPredicted RBP24.97■■□□□ 1.59
NID1-202ENST00000366595 DAXXQ9UER7 740 aaPredicted RBP24.92■■□□□ 1.58
NID1-202ENST00000366595 NISCHQ9Y2I1 1504 aa24.79■■□□□ 1.56
NID1-202ENST00000366595 TRIM41Q8WV44 630 aa24.57■■□□□ 1.52
NID1-202ENST00000366595 ATP1B4Q9UN42 357 aaPredicted RBP24.56■■□□□ 1.52
NID1-202ENST00000366595 RANGAP1P46060 587 aaPredicted RBP24.5■■□□□ 1.51
NID1-202ENST00000366595 UBTFP17480 764 aaKnown RBP24.44■■□□□ 1.5
NID1-202ENST00000366595 RTL5Q5HYW3 569 aaPredicted RBP24.43■■□□□ 1.5
NID1-202ENST00000366595 ZNF316A6NFI3 1004 aaPredicted RBP24.25■■□□□ 1.47
NID1-202ENST00000366595 TRIM26Q12899 539 aaPredicted RBP24.24■■□□□ 1.47
NID1-202ENST00000366595 HRCP23327 699 aa24.16■■□□□ 1.46
NID1-202ENST00000366595 CLSPNQ9HAW4 1339 aa24.01■■□□□ 1.43
NID1-202ENST00000366595 POLR3GLQ9BT43 218 aa23.99■■□□□ 1.43
NID1-202ENST00000366595 PPARGC1BQ86YN6 1023 aaKnown RBP23.76■■□□□ 1.39
NID1-202ENST00000366595 MYT1LQ9UL68 1186 aa23.74■■□□□ 1.39
NID1-202ENST00000366595 ITGAEP38570 1179 aa23.7■■□□□ 1.38
NID1-202ENST00000366595 DIEXFQ68CQ4 756 aaKnown RBP23.67■■□□□ 1.38
NID1-202ENST00000366595 CDK11AQ9UQ88 783 aaPredicted RBP23.63■■□□□ 1.37
NID1-202ENST00000366595 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP23.61■■□□□ 1.37
NID1-202ENST00000366595 HNRNPUL2Q1KMD3 747 aaKnown RBP23.61■■□□□ 1.37
NID1-202ENST00000366595 ZBTB47Q9UFB7 747 aaPredicted RBP23.58■■□□□ 1.36
NID1-202ENST00000366595 CNGB1Q14028 1251 aaPredicted RBP23.56■■□□□ 1.36
NID1-202ENST00000366595 SLC4A1APQ9BWU0 796 aaKnown RBP23.56■■□□□ 1.36
NID1-202ENST00000366595 GLIPR1L2Q4G1C9 344 aa23.41■■□□□ 1.34
NID1-202ENST00000366595 GTF3C3Q9Y5Q9 886 aa23.36■■□□□ 1.33
NID1-202ENST00000366595 ANP32CO43423 234 aa23.34■■□□□ 1.33
NID1-202ENST00000366595 ANP32AP39687 249 aaKnown RBP23.34■■□□□ 1.33
NID1-202ENST00000366595 ANP32BQ92688 251 aaKnown RBP23.3■■□□□ 1.32
NID1-202ENST00000366595 BCANQ96GW7 911 aa23.3■■□□□ 1.32
NID1-202ENST00000366595 EIF5BO60841 1220 aaKnown RBP23.19■■□□□ 1.3
NID1-202ENST00000366595 CANXP27824 592 aaKnown RBP23.19■■□□□ 1.3
NID1-202ENST00000366595 LOC105371045A0A1W2PR82 267 aa23.14■■□□□ 1.29
NID1-202ENST00000366595 TRIM52Q96A61 297 aa23.12■■□□□ 1.29
NID1-202ENST00000366595 CHIC1Q5VXU3 224 aa23.11■■□□□ 1.29
NID1-202ENST00000366595 NEFMP07197 916 aa23.1■■□□□ 1.29
NID1-202ENST00000366595 FAM50AQ14320 339 aaKnown RBP23.08■■□□□ 1.29
NID1-202ENST00000366595 NEUROD1Q13562 356 aa23.01■■□□□ 1.27
NID1-202ENST00000366595 ACIN1Q9UKV3 1341 aaKnown RBP22.99■■□□□ 1.27
NID1-202ENST00000366595 UPF2Q9HAU5 1272 aaKnown RBP22.94■■□□□ 1.26
NID1-202ENST00000366595 HSP90AA1P07900 732 aaKnown RBP22.92■■□□□ 1.26
NID1-202ENST00000366595 NPM2Q86SE8 214 aaKnown RBP22.88■■□□□ 1.25
NID1-202ENST00000366595 ZNF326Q5BKZ1 582 aaKnown RBP22.85■■□□□ 1.25
NID1-202ENST00000366595 SLC24A1O60721 1099 aa22.81■■□□□ 1.24
NID1-202ENST00000366595 BCL11AQ9H165 835 aa22.79■■□□□ 1.24
NID1-202ENST00000366595 FKBP8Q14318 412 aa22.65■■□□□ 1.22
NID1-202ENST00000366595 GOLGA6L2Q8N9W4 650 aaPredicted RBP22.58■■□□□ 1.2
NID1-202ENST00000366595 TNNT2P45379 298 aaPredicted RBP22.57■■□□□ 1.2
NID1-202ENST00000366595 ANP32EQ9BTT0 268 aa22.57■■□□□ 1.2
NID1-202ENST00000366595 CDK11BP21127 795 aaKnown RBP22.54■■□□□ 1.2
NID1-202ENST00000366595 CCDC136Q96JN2 1154 aa22.48■■□□□ 1.19
NID1-202ENST00000366595 HNRNPUQ00839 825 aaKnown RBP eCLIP22.46■■□□□ 1.19
NID1-202ENST00000366595 NBR1Q14596 966 aa22.46■■□□□ 1.19
NID1-202ENST00000366595 TRIM44Q96DX7 344 aaPredicted RBP22.42■■□□□ 1.18
NID1-202ENST00000366595 DDRGK1Q96HY6 314 aa22.4■■□□□ 1.18
NID1-202ENST00000366595 BECN1Q14457 450 aa22.36■■□□□ 1.17
NID1-202ENST00000366595 NCLP19338 710 aaKnown RBP22.36■■□□□ 1.17
NID1-202ENST00000366595 TONSLQ96HA7 1378 aa22.36■■□□□ 1.17
NID1-202ENST00000366595 GOLGA6L22H0YM25 854 aa22.33■■□□□ 1.17
NID1-202ENST00000366595 ARXQ96QS3 562 aa22.31■■□□□ 1.16
NID1-202ENST00000366595 FAM9BQ8IZU0 186 aa22.28■■□□□ 1.16
NID1-202ENST00000366595 MYH16Q9H6N6 1097 aa22.28■■□□□ 1.16
NID1-202ENST00000366595 ERICH6BQ5W0A0 696 aa22.27■■□□□ 1.16
NID1-202ENST00000366595 TMC1Q8TDI8 760 aa22.25■■□□□ 1.15
NID1-202ENST00000366595 WDR43Q15061 677 aaKnown RBP eCLIP22.21■■□□□ 1.15
NID1-202ENST00000366595 DDX10Q13206 875 aaKnown RBP22.16■■□□□ 1.14
NID1-202ENST00000366595 PPM1GO15355 546 aaPredicted RBP22.15■■□□□ 1.14
NID1-202ENST00000366595 PTMAP06454 111 aaKnown RBP22.15■■□□□ 1.14
NID1-202ENST00000366595 ZRSR1Q15695 479 aaKnown RBP22.13■■□□□ 1.13
NID1-202ENST00000366595 ESF1Q9H501 851 aaKnown RBP22.13■■□□□ 1.13
NID1-202ENST00000366595 MRS2Q9HD23 443 aa22.09■■□□□ 1.13
NID1-202ENST00000366595 ZNF777Q9ULD5 760 aaPredicted RBP22.08■■□□□ 1.13
NID1-202ENST00000366595 DNTTIP2Q5QJE6 756 aaKnown RBP22.08■■□□□ 1.13
NID1-202ENST00000366595 SALL2Q9Y467 1007 aaPredicted RBP22.07■■□□□ 1.12
NID1-202ENST00000366595 CSRNP3Q8WYN3 585 aa22.07■■□□□ 1.12
NID1-202ENST00000366595 STAG3Q9UJ98 1225 aa22.06■■□□□ 1.12
NID1-202ENST00000366595 FBLN2P98095 1184 aa22.05■■□□□ 1.12
NID1-202ENST00000366595 NAP1L5Q96NT1 182 aaPredicted RBP22■■□□□ 1.11
NID1-202ENST00000366595 CHGAP10645 457 aaKnown RBP22■■□□□ 1.11
NID1-202ENST00000366595 CASC1Q6TDU7 716 aa21.97■■□□□ 1.11
NID1-202ENST00000366595 GOLGA6L6A8MZA4 724 aa21.97■■□□□ 1.11
NID1-202ENST00000366595 NRDCO43847 1150 aa21.95■■□□□ 1.1
NID1-202ENST00000366595 P3H3Q8IVL6 736 aa21.94■■□□□ 1.1
NID1-202ENST00000366595 SCAF1Q9H7N4 1312 aaKnown RBP21.89■■□□□ 1.09
NID1-202ENST00000366595 DCAF1Q9Y4B6 1507 aa21.86■■□□□ 1.09
NID1-202ENST00000366595 ARID3CA6NKF2 412 aa21.85■■□□□ 1.09
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms