Protein–RNA interactions for Protein: P56589

PEX3, Peroxisomal biogenesis factor 3, humanhuman

Predictions only

Length 373 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PEX3P56589 RGS9BP-201ENST00000334176 2894 ntAPPRIS P1 BASIC20.16■□□□□ 0.82
PEX3P56589 RPL32-202ENST00000396953 1734 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
PEX3P56589 SERPINE2-206ENST00000447280 1716 ntTSL 2 BASIC20.16■□□□□ 0.82
PEX3P56589 ALDOC-201ENST00000226253 1982 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
PEX3P56589 HCLS1-201ENST00000314583 2000 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
PEX3P56589 KCTD12-201ENST00000377474 6225 ntAPPRIS P1 BASIC20.15■□□□□ 0.82
PEX3P56589 EGLN2-201ENST00000303961 2102 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
PEX3P56589 CAMKK2-207ENST00000404169 2116 ntAPPRIS P4 TSL 1 (best) BASIC20.15■□□□□ 0.82
PEX3P56589 AP003356.1-202ENST00000517910 2770 ntTSL 2 BASIC20.15■□□□□ 0.82
PEX3P56589 GPR32-201ENST00000270590 1269 ntAPPRIS P1 BASIC20.15■□□□□ 0.82
PEX3P56589 ZFAND2A-201ENST00000316495 860 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
PEX3P56589 NMRK1-202ENST00000376808 1121 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
PEX3P56589 ZFAND2A-203ENST00000401903 968 ntTSL 3 BASIC20.15■□□□□ 0.82
PEX3P56589 RNF216P1-205ENST00000406089 807 ntTSL 5 BASIC20.15■□□□□ 0.82
PEX3P56589 AC093901.1-201ENST00000414886 778 ntTSL 5 BASIC20.15■□□□□ 0.82
PEX3P56589 SMIM19-202ENST00000416469 691 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
PEX3P56589 AL603832.1-201ENST00000421943 449 ntTSL 5 BASIC20.15■□□□□ 0.82
PEX3P56589 AP003733.1-201ENST00000491725 852 ntBASIC20.15■□□□□ 0.82
PEX3P56589 AF186192.2-201ENST00000524514 423 ntTSL 3 BASIC20.15■□□□□ 0.82
PEX3P56589 SLC9A3R2-208ENST00000566198 1199 ntTSL 2 BASIC20.15■□□□□ 0.82
PEX3P56589 RNF126P1-202ENST00000569893 925 ntBASIC20.15■□□□□ 0.82
PEX3P56589 WDR6-223ENST00000627177 207 ntTSL 2 BASIC20.15■□□□□ 0.82
PEX3P56589 TBC1D9B-220ENST00000630103 303 ntTSL 5 BASIC20.15■□□□□ 0.82
PEX3P56589 AP000550.4-202ENST00000639755 178 ntBASIC20.15■□□□□ 0.82
PEX3P56589 VPS37D-202ENST00000451519 1303 ntTSL 5 BASIC20.15■□□□□ 0.82
PEX3P56589 IER3-202ENST00000376377 1350 ntBASIC20.15■□□□□ 0.82
PEX3P56589 SPSB3-201ENST00000301717 1449 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
PEX3P56589 PCDH1-201ENST00000287008 4793 ntAPPRIS P3 TSL 5 BASIC20.15■□□□□ 0.82
PEX3P56589 RNPS1-219ENST00000566397 1685 ntTSL 2 BASIC20.15■□□□□ 0.82
PEX3P56589 FBXO44-201ENST00000251546 1896 ntTSL 2 BASIC20.15■□□□□ 0.82
PEX3P56589 TIMM13-201ENST00000215570 1973 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
PEX3P56589 AP001476.1-201ENST00000451618 2198 ntTSL 2 BASIC20.15■□□□□ 0.82
PEX3P56589 TOR2A-205ENST00000463577 2211 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
PEX3P56589 AP003774.1-201ENST00000316124 2340 ntTSL 2 BASIC20.15■□□□□ 0.82
PEX3P56589 HNRNPM-201ENST00000325495 2494 ntAPPRIS P4 TSL 1 (best) BASIC20.15■□□□□ 0.82
PEX3P56589 CCNJ-202ENST00000403870 2830 ntTSL 5 BASIC20.15■□□□□ 0.82
PEX3P56589 UVSSA-207ENST00000511216 2927 ntAPPRIS P2 TSL 1 (best) BASIC20.15■□□□□ 0.82
PEX3P56589 AC008878.3-201ENST00000617428 4964 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
PEX3P56589 GORASP1-206ENST00000422110 2523 ntTSL 2 BASIC20.14■□□□□ 0.82
PEX3P56589 NBL1-212ENST00000621723 2133 ntAPPRIS P3 TSL 2 BASIC20.14■□□□□ 0.81
PEX3P56589 HIBADH-201ENST00000265395 1990 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
PEX3P56589 PPP1R7-202ENST00000272983 1954 ntTSL 2 BASIC20.14■□□□□ 0.81
PEX3P56589 WNT9B-201ENST00000290015 1376 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
PEX3P56589 AC099518.3-201ENST00000564808 809 ntAPPRIS P5 TSL 4 BASIC20.14■□□□□ 0.81
PEX3P56589 ZNF575-205ENST00000601282 1086 ntAPPRIS P1 TSL 2 BASIC20.14■□□□□ 0.81
PEX3P56589 MLLT1-201ENST00000252674 4507 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
PEX3P56589 FGFR3-202ENST00000340107 4293 ntAPPRIS ALT2 TSL 5 BASIC20.14■□□□□ 0.81
PEX3P56589 APLP2-210ENST00000528499 2530 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
PEX3P56589 BMP2K-208ENST00000628286 3848 ntAPPRIS ALT2 TSL 5 BASIC20.14■□□□□ 0.81
PEX3P56589 NUMBL-207ENST00000598779 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC20.14■□□□□ 0.81
PEX3P56589 LRRC27-203ENST00000368613 2113 ntAPPRIS P3 TSL 1 (best) BASIC20.14■□□□□ 0.81
PEX3P56589 COPS7A-215ENST00000543155 2127 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
PEX3P56589 CD19-202ENST00000538922 1957 ntAPPRIS ALT2 TSL 5 BASIC20.14■□□□□ 0.81
PEX3P56589 GBGT1-208ENST00000540636 1934 ntTSL 2 BASIC20.14■□□□□ 0.81
PEX3P56589 RGS3-202ENST00000342620 1714 ntTSL 5 BASIC20.13■□□□□ 0.81
PEX3P56589 GXYLT1-202ENST00000398675 7497 ntAPPRIS P4 TSL 1 (best) BASIC20.13■□□□□ 0.81
PEX3P56589 C21orf59-201ENST00000290155 1692 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
PEX3P56589 GOLPH3-201ENST00000265070 2721 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
PEX3P56589 WAC-205ENST00000375664 5924 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
PEX3P56589 CAMK2B-203ENST00000347193 1577 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
PEX3P56589 HS3ST3A1-201ENST00000284110 2527 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
PEX3P56589 SPACA1-201ENST00000237201 1499 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
PEX3P56589 CNNM3-202ENST00000377060 3308 ntTSL 2 BASIC20.13■□□□□ 0.81
PEX3P56589 CD209-210ENST00000601951 1439 ntAPPRIS ALT2 TSL 1 (best) BASIC20.13■□□□□ 0.81
PEX3P56589 CTSH-201ENST00000220166 2190 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
PEX3P56589 BID-205ENST00000399774 2167 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
PEX3P56589 GNGT2-201ENST00000300406 889 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
PEX3P56589 ATP6V0C-201ENST00000330398 1175 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
PEX3P56589 CATIP-AS1-202ENST00000441749 480 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
PEX3P56589 MRPL52-215ENST00000556840 398 ntTSL 2 BASIC20.13■□□□□ 0.81
PEX3P56589 AC020558.2-201ENST00000582325 795 ntTSL 3 BASIC20.13■□□□□ 0.81
PEX3P56589 AC091076.1-201ENST00000610741 619 ntBASIC20.13■□□□□ 0.81
PEX3P56589 CLN3-259ENST00000637551 1083 ntTSL 5 BASIC20.13■□□□□ 0.81
PEX3P56589 KMT5B-206ENST00000405515 2869 ntTSL 5 BASIC20.13■□□□□ 0.81
PEX3P56589 RIOX2-201ENST00000333396 5347 ntAPPRIS ALT1 TSL 1 (best) BASIC20.13■□□□□ 0.81
PEX3P56589 MPZ-206ENST00000533357 1955 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
PEX3P56589 KIF16B-206ENST00000636835 5109 ntAPPRIS ALT2 TSL 1 (best) BASIC20.13■□□□□ 0.81
PEX3P56589 CLN8-211ENST00000636934 1790 ntTSL 5 BASIC20.13■□□□□ 0.81
PEX3P56589 MEN1-202ENST00000315422 3148 ntAPPRIS ALT1 TSL 5 BASIC20.13■□□□□ 0.81
PEX3P56589 SPART-209ENST00000494062 3018 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
PEX3P56589 GNAS-AS1-202ENST00000443966 2341 ntTSL 5 BASIC20.13■□□□□ 0.81
PEX3P56589 SEMA7A-203ENST00000543145 2304 ntTSL 2 BASIC20.13■□□□□ 0.81
PEX3P56589 WWC3-201ENST00000380861 6647 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
PEX3P56589 GUCA1A-202ENST00000372958 1575 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
PEX3P56589 P3H1-204ENST00000397054 2705 ntAPPRIS ALT2 TSL 1 (best) BASIC20.12■□□□□ 0.81
PEX3P56589 GLB1-202ENST00000307377 2018 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
PEX3P56589 KCNN4-209ENST00000615047 2029 ntTSL 5 BASIC20.12■□□□□ 0.81
PEX3P56589 RNF114-201ENST00000244061 2503 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
PEX3P56589 NUMBL-202ENST00000540131 1931 ntAPPRIS ALT2 TSL 2 BASIC20.12■□□□□ 0.81
PEX3P56589 NOP56-201ENST00000329276 2400 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
PEX3P56589 CPSF3-201ENST00000238112 2345 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
PEX3P56589 AP1AR-202ENST00000309703 2337 ntAPPRIS ALT1 TSL 1 (best) BASIC20.12■□□□□ 0.81
PEX3P56589 SNX11-201ENST00000359238 2315 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
PEX3P56589 HES2-202ENST00000377836 507 ntTSL 2 BASIC20.12■□□□□ 0.81
PEX3P56589 C16orf91-201ENST00000442039 978 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
PEX3P56589 CNP-204ENST00000472031 1019 ntTSL 2 BASIC20.12■□□□□ 0.81
PEX3P56589 ACY1-210ENST00000494103 1298 ntTSL 3 BASIC20.12■□□□□ 0.81
PEX3P56589 ENDOV-202ENST00000517295 908 ntTSL 3 BASIC20.12■□□□□ 0.81
PEX3P56589 MRPL52-210ENST00000555345 895 ntTSL 2 BASIC20.12■□□□□ 0.81
PEX3P56589 MIR2117HG-201ENST00000588060 506 ntTSL 4 BASIC20.12■□□□□ 0.81
Retrieved 100 of 98,524 protein–RNA pairs in 37.2 ms