Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 GAD2-202ENST00000376248 680 ntTSL 5 BASIC17.25■□□□□ 0.35
SOX3P41225 C7orf50-203ENST00000397100 1264 ntAPPRIS P2 TSL 3 BASIC17.25■□□□□ 0.35
SOX3P41225 TMA7-201ENST00000438607 561 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
SOX3P41225 MAP3K13-213ENST00000454237 526 ntTSL 3 BASIC17.25■□□□□ 0.35
SOX3P41225 MRPL46-202ENST00000558531 1002 ntTSL 2 BASIC17.25■□□□□ 0.35
SOX3P41225 ETFA-216ENST00000560726 942 ntTSL 3 BASIC17.25■□□□□ 0.35
SOX3P41225 RMI2-205ENST00000576027 818 ntTSL 2 BASIC17.25■□□□□ 0.35
SOX3P41225 BVES-AS1-203ENST00000580511 853 ntTSL 5 BASIC17.25■□□□□ 0.35
SOX3P41225 C17orf62-221ENST00000581196 668 ntTSL 4 BASIC17.25■□□□□ 0.35
SOX3P41225 UQCR11-201ENST00000585671 753 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
SOX3P41225 ATP5D-207ENST00000591660 637 ntAPPRIS P1 TSL 3 BASIC17.25■□□□□ 0.35
SOX3P41225 KLK7-206ENST00000597707 1054 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
SOX3P41225 UBA52-210ENST00000598780 668 ntAPPRIS P1 TSL 3 BASIC17.25■□□□□ 0.35
SOX3P41225 MTMR1-208ENST00000445323 4516 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
SOX3P41225 RAVER1-207ENST00000615032 1952 ntAPPRIS ALT2 TSL 5 BASIC17.25■□□□□ 0.35
SOX3P41225 RBM15B-201ENST00000563281 6641 ntAPPRIS P1 BASIC17.25■□□□□ 0.35
SOX3P41225 CELF2-217ENST00000638035 1849 ntAPPRIS P3 TSL 5 BASIC17.25■□□□□ 0.35
SOX3P41225 PSMG4-209ENST00000473000 4603 ntTSL 2 BASIC17.25■□□□□ 0.35
SOX3P41225 ST6GALNAC4-201ENST00000335791 1691 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
SOX3P41225 MATN4-201ENST00000353917 1657 ntTSL 5 BASIC17.25■□□□□ 0.35
SOX3P41225 PROSER2-201ENST00000277570 3333 ntAPPRIS P2 TSL 1 (best) BASIC17.25■□□□□ 0.35
SOX3P41225 B4GALT2-202ENST00000356836 2629 ntAPPRIS P1 TSL 2 BASIC17.25■□□□□ 0.35
SOX3P41225 TAX1BP3-201ENST00000225525 1377 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
SOX3P41225 MXRA8-209ENST00000477278 2728 ntTSL 5 BASIC17.25■□□□□ 0.35
SOX3P41225 AFG3L1P-203ENST00000418696 2965 ntTSL 2 BASIC17.25■□□□□ 0.35
SOX3P41225 YY1AP1-213ENST00000405763 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
SOX3P41225 AL355987.1-201ENST00000435202 2420 ntAPPRIS P1 TSL 2 BASIC17.25■□□□□ 0.35
SOX3P41225 FAM234A-203ENST00000399932 3213 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
SOX3P41225 SIM2-201ENST00000290399 4442 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
SOX3P41225 CCDC157-203ENST00000405659 3052 ntAPPRIS P3 TSL 1 (best) BASIC17.24■□□□□ 0.35
SOX3P41225 NUDT16L1-201ENST00000304301 1349 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
SOX3P41225 CNNM3-201ENST00000305510 3447 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
SOX3P41225 MARK2-209ENST00000509502 2862 ntAPPRIS ALT2 TSL 2 BASIC17.24■□□□□ 0.35
SOX3P41225 CHRAC1-201ENST00000220913 2488 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
SOX3P41225 NPNT-203ENST00000427316 2481 ntAPPRIS ALT2 TSL 2 BASIC17.24■□□□□ 0.35
SOX3P41225 KCTD2-201ENST00000322444 3635 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
SOX3P41225 TSSC4-201ENST00000333256 1686 ntAPPRIS P3 TSL 1 (best) BASIC17.24■□□□□ 0.35
SOX3P41225 LCE4A-202ENST00000368777 672 ntAPPRIS P1 TSL 2 BASIC17.24■□□□□ 0.35
SOX3P41225 IMP3-202ENST00000403490 1237 ntAPPRIS P1 BASIC17.24■□□□□ 0.35
SOX3P41225 PLCB1-204ENST00000404098 1260 ntTSL 3 BASIC17.24■□□□□ 0.35
SOX3P41225 FAM8A6P-201ENST00000407496 1135 ntBASIC17.24■□□□□ 0.35
SOX3P41225 HDAC11-AS1-201ENST00000424112 515 ntTSL 2 BASIC17.24■□□□□ 0.35
SOX3P41225 REEP1-207ENST00000535845 1196 ntTSL 2 BASIC17.24■□□□□ 0.35
SOX3P41225 GCSHP2-201ENST00000560971 527 ntBASIC17.24■□□□□ 0.35
SOX3P41225 DCTN5-208ENST00000568589 772 ntTSL 2 BASIC17.24■□□□□ 0.35
SOX3P41225 BCL2L12-208ENST00000600947 633 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
SOX3P41225 PRKCB-202ENST00000321728 2689 ntAPPRIS ALT1 TSL 1 (best) BASIC17.24■□□□□ 0.35
SOX3P41225 KRT81-202ENST00000615839 1505 ntAPPRIS ALT2 TSL 5 BASIC17.24■□□□□ 0.35
SOX3P41225 DNAJA3-203ENST00000431375 2294 ntTSL 2 BASIC17.24■□□□□ 0.35
SOX3P41225 TADA3-201ENST00000301964 2355 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
SOX3P41225 EGFL6-201ENST00000361306 2398 ntAPPRIS P3 TSL 1 (best) BASIC17.24■□□□□ 0.35
SOX3P41225 P2RX2-206ENST00000389110 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
SOX3P41225 ICA1-208ENST00000407906 1615 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
SOX3P41225 CASKIN2-205ENST00000581870 1612 ntTSL 2 BASIC17.24■□□□□ 0.35
SOX3P41225 TUBGCP3-202ENST00000375669 2723 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
SOX3P41225 EMC8-201ENST00000253457 1962 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
SOX3P41225 NDRG2-227ENST00000554143 1980 ntAPPRIS ALT1 TSL 2 BASIC17.24■□□□□ 0.35
SOX3P41225 RASSF7-205ENST00000454668 1450 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
SOX3P41225 ARPC4-201ENST00000397261 2582 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
SOX3P41225 CRHR2-207ENST00000471646 2530 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
SOX3P41225 ATP1B1-202ENST00000367816 2608 ntAPPRIS P1 TSL 5 BASIC17.23■□□□□ 0.35
SOX3P41225 IGFALS-202ENST00000415638 2136 ntTSL 2 BASIC17.23■□□□□ 0.35
SOX3P41225 ADGRA3-202ENST00000334304 4566 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
SOX3P41225 AC140125.2-201ENST00000502515 1517 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
SOX3P41225 STK25-203ENST00000403346 2210 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
SOX3P41225 BRMS1L-201ENST00000216807 2657 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
SOX3P41225 AC067852.2-201ENST00000590513 2313 ntBASIC17.23■□□□□ 0.35
SOX3P41225 ATPAF1-214ENST00000576409 4158 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
SOX3P41225 TSPAN14-202ENST00000341863 1037 ntTSL 5 BASIC17.23■□□□□ 0.35
SOX3P41225 CDHR4-201ENST00000343366 1188 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
SOX3P41225 PHOSPHO2-201ENST00000359744 1125 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
SOX3P41225 PMEPA1-204ENST00000395814 800 ntTSL 3 BASIC17.23■□□□□ 0.35
SOX3P41225 HOMER2P1-201ENST00000455653 964 ntBASIC17.23■□□□□ 0.35
SOX3P41225 AL359075.1-203ENST00000462729 1002 ntBASIC17.23■□□□□ 0.35
SOX3P41225 APBB3-216ENST00000511201 1014 ntTSL 5 BASIC17.23■□□□□ 0.35
SOX3P41225 LY6E-210ENST00000521182 1079 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
SOX3P41225 AZIN1-AS1-214ENST00000522850 473 ntTSL 3 BASIC17.23■□□□□ 0.35
SOX3P41225 AC087388.1-201ENST00000571370 1112 ntBASIC17.23■□□□□ 0.35
SOX3P41225 NT5C-211ENST00000582170 653 ntTSL 3 BASIC17.23■□□□□ 0.35
SOX3P41225 C16orf74-207ENST00000602914 761 ntAPPRIS ALT2 TSL 2 BASIC17.23■□□□□ 0.35
SOX3P41225 COLCA2-205ENST00000614153 1264 ntTSL 3 BASIC17.23■□□□□ 0.35
SOX3P41225 FAM53A-207ENST00000489363 2776 ntTSL 2 BASIC17.23■□□□□ 0.35
SOX3P41225 ARHGEF28-204ENST00000437974 5792 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
SOX3P41225 CHRNA4-207ENST00000615287 5643 ntTSL 5 BASIC17.23■□□□□ 0.35
SOX3P41225 GHDC-212ENST00000593209 1827 ntTSL 5 BASIC17.23■□□□□ 0.35
SOX3P41225 RASSF1-210ENST00000616212 1842 ntTSL 2 BASIC17.23■□□□□ 0.35
SOX3P41225 MAGED2-213ENST00000627068 1811 ntAPPRIS ALT2 TSL 5 BASIC17.23■□□□□ 0.35
SOX3P41225 AP2M1-201ENST00000292807 1931 ntAPPRIS P4 TSL 5 BASIC17.23■□□□□ 0.35
SOX3P41225 EIF2AK3-201ENST00000303236 4646 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
SOX3P41225 APP-202ENST00000348990 3355 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
SOX3P41225 AJUBA-202ENST00000361265 2569 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
SOX3P41225 CDK4-202ENST00000312990 1650 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
SOX3P41225 SEMA3B-209ENST00000456560 2221 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
SOX3P41225 RREB1-201ENST00000334984 5789 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
SOX3P41225 SLC35F5-201ENST00000245680 4412 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
SOX3P41225 DMD-208ENST00000378680 1858 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
SOX3P41225 T-201ENST00000296946 2436 ntAPPRIS P1 TSL 5 BASIC17.22■□□□□ 0.35
SOX3P41225 CD276-201ENST00000318424 2738 ntTSL 5 BASIC17.22■□□□□ 0.35
SOX3P41225 CCK-202ENST00000396169 1527 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
SOX3P41225 TTLL12-201ENST00000216129 3385 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 51.1 ms