RNA–Protein interactions for RNA: ENST00000333256.10

TSSC4-201, Transcript of tumor suppressing subtransferable candidate 4, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene TSSC4, Length 1,686 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TSSC4-201ENST00000333256 NISCHQ9Y2I1 1504 aa44.13■■■■■ 4.65
TSSC4-201ENST00000333256 CCDC180Q9P1Z9 1646 aa38.84■■■■□ 3.81
TSSC4-201ENST00000333256 ABCC9O60706 1549 aa37.61■■■■□ 3.61
TSSC4-201ENST00000333256 ZCCHC6Q5VYS8 1495 aaKnown RBP36.89■■■■□ 3.5
TSSC4-201ENST00000333256 DCAF8L2P0C7V8 631 aa36.82■■■■□ 3.48
TSSC4-201ENST00000333256 DCAF1Q9Y4B6 1507 aa36.43■■■■□ 3.42
TSSC4-201ENST00000333256 NACADO15069 1562 aa36.39■■■■□ 3.42
TSSC4-201ENST00000333256 MYO15BQ96JP2 1530 aa36.33■■■■□ 3.41
TSSC4-201ENST00000333256 RB1CC1Q8TDY2 1594 aa36.31■■■■□ 3.4
TSSC4-201ENST00000333256 SCRIBQ14160 1630 aa35.67■■■■□ 3.3
TSSC4-201ENST00000333256 UNC13AQ9UPW8 1703 aa35.5■■■■□ 3.27
TSSC4-201ENST00000333256 SHROOM4Q9ULL8 1493 aa35.48■■■■□ 3.27
TSSC4-201ENST00000333256 PABPN1Q86U42 306 aaKnown RBP eCLIP35.31■■■■□ 3.24
TSSC4-201ENST00000333256 BICRAQ9NZM4 1560 aa35.23■■■■□ 3.23
TSSC4-201ENST00000333256 CECR2Q9BXF3 1484 aa34.4■■■■□ 3.1
TSSC4-201ENST00000333256 EIF4G1Q04637 1599 aaKnown RBP34.25■■■■□ 3.07
TSSC4-201ENST00000333256 BAZ1AQ9NRL2 1556 aaPredicted RBP34.14■■■■□ 3.06
TSSC4-201ENST00000333256 SMARCA4P51532 1647 aa34.1■■■■□ 3.05
TSSC4-201ENST00000333256 MROH2BQ7Z745 1585 aa34.08■■■■□ 3.05
TSSC4-201ENST00000333256 DNAJC5BQ9UF47 199 aa33.97■■■■□ 3.03
TSSC4-201ENST00000333256 CC2D2AQ9P2K1 1620 aa33.97■■■■□ 3.03
TSSC4-201ENST00000333256 RSF1Q96T23 1441 aaPredicted RBP33.92■■■■□ 3.02
TSSC4-201ENST00000333256 ATAD2BQ9ULI0 1458 aa33.77■■■■□ 3
TSSC4-201ENST00000333256 WIZO95785 1651 aa33.74■■■□□ 2.99
TSSC4-201ENST00000333256 SMARCA2P51531 1590 aa33.71■■■□□ 2.99
TSSC4-201ENST00000333256 SUPT5HO00267 1087 aaKnown RBP33.7■■■□□ 2.99
TSSC4-201ENST00000333256 PEG3Q9GZU2 1588 aa33.69■■■□□ 2.98
TSSC4-201ENST00000333256 NCAPD3P42695 1498 aa33.62■■■□□ 2.97
TSSC4-201ENST00000333256 BAZ1BQ9UIG0 1483 aaKnown RBP33.54■■■□□ 2.96
TSSC4-201ENST00000333256 HMGXB3Q12766 1538 aa33.48■■■□□ 2.95
TSSC4-201ENST00000333256 TOP2AP11388 1531 aaKnown RBP33.36■■■□□ 2.93
TSSC4-201ENST00000333256 CCDC88BA6NC98 1476 aa33.02■■■□□ 2.88
TSSC4-201ENST00000333256 NESP48681 1621 aa32.74■■■□□ 2.83
TSSC4-201ENST00000333256 CADPSQ9ULU8 1353 aa32.71■■■□□ 2.83
TSSC4-201ENST00000333256 CFTRP13569 1480 aa32.64■■■□□ 2.82
TSSC4-201ENST00000333256 LAMC3Q9Y6N6 1575 aa32.6■■■□□ 2.81
TSSC4-201ENST00000333256 PDS5BQ9NTI5 1447 aa32.4■■■□□ 2.78
TSSC4-201ENST00000333256 FANCD2Q9BXW9 1451 aa32.35■■■□□ 2.77
TSSC4-201ENST00000333256 PRDM2Q13029 1718 aa32.33■■■□□ 2.77
TSSC4-201ENST00000333256 ERCC6Q03468 1493 aa32.32■■■□□ 2.76
TSSC4-201ENST00000333256 KIF21AQ7Z4S6 1674 aa32.28■■■□□ 2.76
TSSC4-201ENST00000333256 CEP164Q9UPV0 1460 aa32.23■■■□□ 2.75
TSSC4-201ENST00000333256 ABCC8Q09428 1581 aa32.07■■■□□ 2.72
TSSC4-201ENST00000333256 MRC2Q9UBG0 1479 aa32.04■■■□□ 2.72
TSSC4-201ENST00000333256 URB2Q14146 1524 aaKnown RBP32.01■■■□□ 2.71
TSSC4-201ENST00000333256 THOC2Q8NI27 1593 aaKnown RBP31.99■■■□□ 2.71
TSSC4-201ENST00000333256 WRNQ14191 1432 aaPredicted RBP eCLIP31.96■■■□□ 2.71
TSSC4-201ENST00000333256 CUX1P39880 1505 aa31.92■■■□□ 2.7
TSSC4-201ENST00000333256 TOPBP1Q92547 1522 aa31.9■■■□□ 2.7
TSSC4-201ENST00000333256 WDR62O43379 1518 aa31.88■■■□□ 2.69
TSSC4-201ENST00000333256 DNMBPQ6XZF7 1577 aa31.88■■■□□ 2.69
TSSC4-201ENST00000333256 SYNJ1O43426 1573 aa31.85■■■□□ 2.69
TSSC4-201ENST00000333256 TOP2BQ02880 1626 aa31.76■■■□□ 2.68
TSSC4-201ENST00000333256 CHIC1Q5VXU3 224 aa31.76■■■□□ 2.67
TSSC4-201ENST00000333256 BIVM-ERCC5R4GMW8 1640 aa31.73■■■□□ 2.67
TSSC4-201ENST00000333256 FGD5Q6ZNL6 1462 aa31.71■■■□□ 2.67
TSSC4-201ENST00000333256 TRIM41Q8WV44 630 aa31.71■■■□□ 2.67
TSSC4-201ENST00000333256 POLA1P09884 1462 aaPredicted RBP31.69■■■□□ 2.66
TSSC4-201ENST00000333256 CUX2O14529 1486 aa31.64■■■□□ 2.65
TSSC4-201ENST00000333256 RAD54L2Q9Y4B4 1467 aa31.6■■■□□ 2.65
TSSC4-201ENST00000333256 SOGA1O94964 1423 aa31.57■■■□□ 2.65
TSSC4-201ENST00000333256 IFT140Q96RY7 1462 aa31.5■■■□□ 2.63
TSSC4-201ENST00000333256 TARBP1Q13395 1621 aaKnown RBP31.47■■■□□ 2.63
TSSC4-201ENST00000333256 ZNF608Q9ULD9 1512 aaPredicted RBP31.4■■■□□ 2.62
TSSC4-201ENST00000333256 TDRD9Q8NDG6 1382 aaKnown RBP31.38■■■□□ 2.61
TSSC4-201ENST00000333256 ABCA10Q8WWZ4 1543 aa31.38■■■□□ 2.61
TSSC4-201ENST00000333256 WDR97A6NE52 1622 aa31.34■■■□□ 2.61
TSSC4-201ENST00000333256 AQRO60306 1485 aaKnown RBP eCLIP31.32■■■□□ 2.6
TSSC4-201ENST00000333256 EIF4G3O43432 1585 aaKnown RBP31.25■■■□□ 2.59
TSSC4-201ENST00000333256 RUSC2Q8N2Y8 1516 aa31.24■■■□□ 2.59
TSSC4-201ENST00000333256 KIF27Q86VH2 1401 aa31.21■■■□□ 2.59
TSSC4-201ENST00000333256 GAPVD1Q14C86 1478 aa31.21■■■□□ 2.59
TSSC4-201ENST00000333256 ABCA5Q8WWZ7 1642 aa31.2■■■□□ 2.59
TSSC4-201ENST00000333256 FAM9AQ8IZU1 332 aaPredicted RBP31.16■■■□□ 2.58
TSSC4-201ENST00000333256 GRIN2BQ13224 1484 aa31.09■■■□□ 2.57
TSSC4-201ENST00000333256 PBRM1Q86U86 1689 aa31.05■■■□□ 2.56
TSSC4-201ENST00000333256 IGF1RP08069 1367 aa31.04■■■□□ 2.56
TSSC4-201ENST00000333256 SNAPC4Q5SXM2 1469 aa31.01■■■□□ 2.55
TSSC4-201ENST00000333256 ERICH3Q5RHP9 1530 aa31■■■□□ 2.55
TSSC4-201ENST00000333256 EEA1Q15075 1411 aa30.98■■■□□ 2.55
TSSC4-201ENST00000333256 CSRNP3Q8WYN3 585 aa30.96■■■□□ 2.55
TSSC4-201ENST00000333256 MAGI1Q96QZ7 1491 aaPredicted RBP30.91■■■□□ 2.54
TSSC4-201ENST00000333256 FBLN2P98095 1184 aa30.88■■■□□ 2.53
TSSC4-201ENST00000333256 CARMIL1Q5VZK9 1371 aa30.87■■■□□ 2.53
TSSC4-201ENST00000333256 ADAMTS12P58397 1594 aa30.87■■■□□ 2.53
TSSC4-201ENST00000333256 FHAD1B1AJZ9 1412 aa30.85■■■□□ 2.53
TSSC4-201ENST00000333256 CUL7Q14999 1698 aa30.82■■■□□ 2.53
TSSC4-201ENST00000333256 CHMP7Q8WUX9 453 aaPredicted RBP30.82■■■□□ 2.52
TSSC4-201ENST00000333256 SYNJ2O15056 1496 aa30.81■■■□□ 2.52
TSSC4-201ENST00000333256 EHMT2Q96KQ7 1210 aa30.8■■■□□ 2.52
TSSC4-201ENST00000333256 PRXQ9BXM0 1461 aa30.78■■■□□ 2.52
TSSC4-201ENST00000333256 RAPGEF2Q9Y4G8 1499 aa30.73■■■□□ 2.51
TSSC4-201ENST00000333256 CHD1O14646 1710 aa30.71■■■□□ 2.51
TSSC4-201ENST00000333256 GRIN2AQ12879 1464 aa30.71■■■□□ 2.51
TSSC4-201ENST00000333256 KIF21BO75037 1637 aa30.64■■■□□ 2.5
TSSC4-201ENST00000333256 GOLGA3Q08378 1498 aa30.56■■■□□ 2.48
TSSC4-201ENST00000333256 LOC105371045A0A1W2PR82 267 aa30.55■■■□□ 2.48
TSSC4-201ENST00000333256 CEP170Q5SW79 1584 aa30.55■■■□□ 2.48
TSSC4-201ENST00000333256 OSCARQ8IYS5 282 aa30.54■■■□□ 2.48
TSSC4-201ENST00000333256 NUP160Q12769 1436 aa30.52■■■□□ 2.48
Retrieved 100 of 20,778 RNA–protein pairs in 149.6 ms