Protein–RNA interactions for Protein: O95025

SEMA3D, Semaphorin-3D, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA3DO95025 DHRS4L2-202ENST00000397071 1117 ntTSL 2 BASIC17.55■□□□□ 0.4
SEMA3DO95025 AP000523.1-201ENST00000398242 1049 ntBASIC17.55■□□□□ 0.4
SEMA3DO95025 C21orf91-202ENST00000400558 1090 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
SEMA3DO95025 HMGB3P22-201ENST00000442010 597 ntTSL 2 BASIC17.55■□□□□ 0.4
SEMA3DO95025 RARRES1-204ENST00000479756 839 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
SEMA3DO95025 CHCHD6-204ENST00000508789 1159 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
SEMA3DO95025 AC011773.3-202ENST00000549291 790 ntTSL 3 BASIC17.55■□□□□ 0.4
SEMA3DO95025 ASB7-203ENST00000558747 2133 ntTSL 5 BASIC17.55■□□□□ 0.4
SEMA3DO95025 NT5C-210ENST00000582160 860 ntTSL 2 BASIC17.55■□□□□ 0.4
SEMA3DO95025 KLK7-206ENST00000597707 1054 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
SEMA3DO95025 PITPNB-211ENST00000634017 1017 ntAPPRIS ALT1 TSL 2 BASIC17.55■□□□□ 0.4
SEMA3DO95025 TRPM4-213ENST00000599628 1829 ntTSL 2 BASIC17.55■□□□□ 0.4
SEMA3DO95025 TCTN1-225ENST00000551590 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
SEMA3DO95025 SDHAP2-201ENST00000455183 2001 ntBASIC17.55■□□□□ 0.4
SEMA3DO95025 GSEC-201ENST00000626810 2289 ntTSL 2 BASIC17.55■□□□□ 0.4
SEMA3DO95025 SPAST-202ENST00000345662 5116 ntAPPRIS ALT1 TSL 1 (best) BASIC17.55■□□□□ 0.4
SEMA3DO95025 B4GALT4-202ENST00000393765 2459 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
SEMA3DO95025 POLR3E-209ENST00000564209 2464 ntTSL 2 BASIC17.55■□□□□ 0.4
SEMA3DO95025 AC068446.2-201ENST00000500487 2165 ntTSL 2 BASIC17.55■□□□□ 0.4
SEMA3DO95025 AC011416.4-201ENST00000639283 2195 ntTSL 5 BASIC17.55■□□□□ 0.4
SEMA3DO95025 STX6-201ENST00000258301 4851 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
SEMA3DO95025 UROS-202ENST00000368778 1556 ntTSL 2 BASIC17.54■□□□□ 0.4
SEMA3DO95025 KCNQ2-205ENST00000360480 2775 ntAPPRIS ALT2 TSL 5 BASIC17.54■□□□□ 0.4
SEMA3DO95025 KRT5-201ENST00000252242 2531 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
SEMA3DO95025 DNM1-211ENST00000627061 2724 ntTSL 5 BASIC17.54■□□□□ 0.4
SEMA3DO95025 SEMA3B-202ENST00000418576 1765 ntTSL 2 BASIC17.54■□□□□ 0.4
SEMA3DO95025 AL512380.2-201ENST00000637901 1780 ntTSL 5 BASIC17.54■□□□□ 0.4
SEMA3DO95025 RAVER1-207ENST00000615032 1952 ntAPPRIS ALT2 TSL 5 BASIC17.54■□□□□ 0.4
SEMA3DO95025 UPK3B-201ENST00000257632 1296 ntAPPRIS P5 TSL 2 BASIC17.54■□□□□ 0.4
SEMA3DO95025 SNAPIN-201ENST00000368685 1030 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
SEMA3DO95025 S100A16-203ENST00000368705 956 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
SEMA3DO95025 TMEM53-201ENST00000372235 890 ntTSL 2 BASIC17.54■□□□□ 0.4
SEMA3DO95025 TSPY8-202ENST00000383000 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
SEMA3DO95025 TSPY2-202ENST00000383042 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
SEMA3DO95025 TSPY3-201ENST00000424594 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
SEMA3DO95025 ECEL1P3-201ENST00000427961 737 ntBASIC17.54■□□□□ 0.4
SEMA3DO95025 FAHD2CP-202ENST00000443258 893 ntTSL 3 BASIC17.54■□□□□ 0.4
SEMA3DO95025 TSPY10-202ENST00000444056 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
SEMA3DO95025 TMA16-209ENST00000513272 803 ntTSL 2 BASIC17.54■□□□□ 0.4
SEMA3DO95025 YPEL3-207ENST00000566134 761 ntTSL 5 BASIC17.54■□□□□ 0.4
SEMA3DO95025 SLC39A11-207ENST00000579732 1004 ntTSL 2 BASIC17.54■□□□□ 0.4
SEMA3DO95025 DNAJB6-218ENST00000634080 1005 ntTSL 2 BASIC17.54■□□□□ 0.4
SEMA3DO95025 AL590627.2-201ENST00000637510 144 ntTSL 5 BASIC17.54■□□□□ 0.4
SEMA3DO95025 NIFK-201ENST00000285814 1734 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
SEMA3DO95025 AGO3-202ENST00000324350 1726 ntTSL 2 BASIC17.54■□□□□ 0.4
SEMA3DO95025 GLIS1-201ENST00000312233 2812 ntAPPRIS P2 TSL 2 BASIC17.54■□□□□ 0.4
SEMA3DO95025 ZBTB10-205ENST00000610895 2833 ntAPPRIS ALT2 TSL 2 BASIC17.54■□□□□ 0.4
SEMA3DO95025 GLIS1-202ENST00000628545 2807 ntAPPRIS ALT2 TSL 5 BASIC17.54■□□□□ 0.4
SEMA3DO95025 TRA2A-211ENST00000538367 2142 ntAPPRIS ALT2 TSL 2 BASIC17.54■□□□□ 0.4
SEMA3DO95025 SPAG9-202ENST00000357122 4761 ntAPPRIS P2 TSL 1 (best) BASIC17.54■□□□□ 0.4
SEMA3DO95025 CALHM2-201ENST00000260743 1859 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
SEMA3DO95025 CRHR2-207ENST00000471646 2530 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
SEMA3DO95025 NMRK1-203ENST00000376811 2050 ntTSL 2 BASIC17.54■□□□□ 0.4
SEMA3DO95025 FAM110A-201ENST00000246100 1619 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
SEMA3DO95025 SLBP-201ENST00000318386 1635 ntAPPRIS ALT1 TSL 3 BASIC17.54■□□□□ 0.4
SEMA3DO95025 TM2D2-201ENST00000397070 1631 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
SEMA3DO95025 PGLYRP2-202ENST00000340880 2230 ntAPPRIS P2 TSL 1 (best) BASIC17.53■□□□□ 0.4
SEMA3DO95025 ACAP3-202ENST00000354700 3896 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
SEMA3DO95025 VEGFA-206ENST00000372077 2834 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
SEMA3DO95025 PCBP4-210ENST00000471622 1784 ntTSL 5 BASIC17.53■□□□□ 0.4
SEMA3DO95025 UBN1-201ENST00000262376 6252 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
SEMA3DO95025 NCF1B-201ENST00000423083 1516 ntTSL 2 BASIC17.53■□□□□ 0.4
SEMA3DO95025 CIAO1-203ENST00000488633 1533 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
SEMA3DO95025 EIF2B4-210ENST00000493344 1949 ntTSL 5 BASIC17.53■□□□□ 0.4
SEMA3DO95025 SSX2IP-210ENST00000605755 1933 ntTSL 2 BASIC17.53■□□□□ 0.4
SEMA3DO95025 MAPRE3-201ENST00000233121 1892 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
SEMA3DO95025 RGS20-203ENST00000344277 1667 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
SEMA3DO95025 BTBD1-202ENST00000379403 1467 ntTSL 5 BASIC17.53■□□□□ 0.4
SEMA3DO95025 MYOZ3-203ENST00000517768 1451 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
SEMA3DO95025 TMEM88B-201ENST00000378821 492 ntAPPRIS P1 TSL 2 BASIC17.53■□□□□ 0.4
SEMA3DO95025 ZNF534-203ENST00000432303 956 ntTSL 2 BASIC17.53■□□□□ 0.4
SEMA3DO95025 UNC5B-AS1-201ENST00000447119 647 ntTSL 2 BASIC17.53■□□□□ 0.4
SEMA3DO95025 MFGE8-203ENST00000542878 1172 ntTSL 2 BASIC17.53■□□□□ 0.4
SEMA3DO95025 AC010240.3-201ENST00000607688 395 ntBASIC17.53■□□□□ 0.4
SEMA3DO95025 SMG5-201ENST00000361813 4559 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
SEMA3DO95025 MMD2-202ENST00000404774 2415 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
SEMA3DO95025 SEMA3B-209ENST00000456560 2221 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
SEMA3DO95025 SLC39A5-201ENST00000266980 2031 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
SEMA3DO95025 SOD2-206ENST00000452684 2045 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
SEMA3DO95025 CARHSP1-219ENST00000618335 2972 ntAPPRIS P1 TSL 4 BASIC17.53■□□□□ 0.4
SEMA3DO95025 PSMG4-209ENST00000473000 4603 ntTSL 2 BASIC17.53■□□□□ 0.4
SEMA3DO95025 HARBI1-201ENST00000326737 1967 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
SEMA3DO95025 CD19-202ENST00000538922 1957 ntAPPRIS ALT2 TSL 5 BASIC17.53■□□□□ 0.4
SEMA3DO95025 RSPO4-201ENST00000217260 2707 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
SEMA3DO95025 PIF1-205ENST00000559239 2677 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
SEMA3DO95025 AC135776.1-201ENST00000319817 2481 ntBASIC17.53■□□□□ 0.4
SEMA3DO95025 ECE1-203ENST00000374893 2484 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
SEMA3DO95025 FO681492.1-203ENST00000622861 1362 ntAPPRIS ALT2 TSL 5 BASIC17.53■□□□□ 0.4
SEMA3DO95025 MRAS-204ENST00000464896 1534 ntTSL 2 BASIC17.52■□□□□ 0.4
SEMA3DO95025 TFCP2-204ENST00000548115 1862 ntTSL 5 BASIC17.52■□□□□ 0.4
SEMA3DO95025 EWSR1-207ENST00000406548 2207 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.4
SEMA3DO95025 ASXL1-202ENST00000375687 7031 ntAPPRIS P2 TSL 5 BASIC17.52■□□□□ 0.4
SEMA3DO95025 ENOPH1-202ENST00000505846 1689 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
SEMA3DO95025 PRODH-205ENST00000420436 2034 ntAPPRIS ALT2 TSL 2 BASIC17.52■□□□□ 0.4
SEMA3DO95025 EHMT1-204ENST00000462484 2707 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
SEMA3DO95025 TBXAS1-204ENST00000416849 2505 ntTSL 5 BASIC17.52■□□□□ 0.4
SEMA3DO95025 AL445433.2-201ENST00000425113 2544 ntTSL 2 BASIC17.52■□□□□ 0.4
SEMA3DO95025 GPANK1-204ENST00000375900 1814 ntAPPRIS P1 TSL 2 BASIC17.52■□□□□ 0.4
SEMA3DO95025 PPP2R2C-209ENST00000515571 1832 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
SEMA3DO95025 DENND2A-201ENST00000275884 3735 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 48 ms