RNA–Protein interactions for RNA: ENST00000378821.3

TMEM88B-201, Transcript of transmembrane protein 88B, humanhuman

APPRIS P1 TSL 2 BASIC

Gene TMEM88B, Length 492 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM88B-201ENST00000378821 NISCHQ9Y2I1 1504 aa47.15■■■■■ 5.14
TMEM88B-201ENST00000378821 CCDC180Q9P1Z9 1646 aa42.2■■■■■ 4.35
TMEM88B-201ENST00000378821 ABCC9O60706 1549 aa41.75■■■■■ 4.27
TMEM88B-201ENST00000378821 RB1CC1Q8TDY2 1594 aa39.97■■■■□ 3.99
TMEM88B-201ENST00000378821 NACADO15069 1562 aa39.82■■■■□ 3.97
TMEM88B-201ENST00000378821 MYO15BQ96JP2 1530 aa39.46■■■■□ 3.91
TMEM88B-201ENST00000378821 DCAF8L2P0C7V8 631 aa39.43■■■■□ 3.9
TMEM88B-201ENST00000378821 ZCCHC6Q5VYS8 1495 aaKnown RBP39.13■■■■□ 3.85
TMEM88B-201ENST00000378821 UNC13AQ9UPW8 1703 aa39.1■■■■□ 3.85
TMEM88B-201ENST00000378821 DCAF1Q9Y4B6 1507 aa39.04■■■■□ 3.84
TMEM88B-201ENST00000378821 DNAJC5BQ9UF47 199 aa38.97■■■■□ 3.83
TMEM88B-201ENST00000378821 PABPN1Q86U42 306 aaKnown RBP eCLIP38.9■■■■□ 3.82
TMEM88B-201ENST00000378821 BICRAQ9NZM4 1560 aa38.84■■■■□ 3.81
TMEM88B-201ENST00000378821 SHROOM4Q9ULL8 1493 aa38.41■■■■□ 3.74
TMEM88B-201ENST00000378821 SCRIBQ14160 1630 aa38.34■■■■□ 3.73
TMEM88B-201ENST00000378821 EIF4G1Q04637 1599 aaKnown RBP37.81■■■■□ 3.64
TMEM88B-201ENST00000378821 CC2D2AQ9P2K1 1620 aa37.81■■■■□ 3.64
TMEM88B-201ENST00000378821 CECR2Q9BXF3 1484 aa37.63■■■■□ 3.61
TMEM88B-201ENST00000378821 NCAPD3P42695 1498 aa36.78■■■■□ 3.48
TMEM88B-201ENST00000378821 SMARCA4P51532 1647 aa36.69■■■■□ 3.46
TMEM88B-201ENST00000378821 ATAD2BQ9ULI0 1458 aa36.66■■■■□ 3.46
TMEM88B-201ENST00000378821 SMARCA2P51531 1590 aa36.57■■■■□ 3.45
TMEM88B-201ENST00000378821 BAZ1AQ9NRL2 1556 aaPredicted RBP36.56■■■■□ 3.44
TMEM88B-201ENST00000378821 HMGXB3Q12766 1538 aa36.51■■■■□ 3.44
TMEM88B-201ENST00000378821 PEG3Q9GZU2 1588 aa36.42■■■■□ 3.42
TMEM88B-201ENST00000378821 MROH2BQ7Z745 1585 aa36.29■■■■□ 3.4
TMEM88B-201ENST00000378821 BAZ1BQ9UIG0 1483 aaKnown RBP36.26■■■■□ 3.4
TMEM88B-201ENST00000378821 ERCC6Q03468 1493 aa36■■■■□ 3.35
TMEM88B-201ENST00000378821 NESP48681 1621 aa35.99■■■■□ 3.35
TMEM88B-201ENST00000378821 CUX2O14529 1486 aa35.97■■■■□ 3.35
TMEM88B-201ENST00000378821 LAMC3Q9Y6N6 1575 aa35.86■■■■□ 3.33
TMEM88B-201ENST00000378821 WIZO95785 1651 aa35.85■■■■□ 3.33
TMEM88B-201ENST00000378821 RSF1Q96T23 1441 aaPredicted RBP35.67■■■■□ 3.3
TMEM88B-201ENST00000378821 THOC2Q8NI27 1593 aaKnown RBP35.62■■■■□ 3.29
TMEM88B-201ENST00000378821 CADPSQ9ULU8 1353 aa35.62■■■■□ 3.29
TMEM88B-201ENST00000378821 PDS5BQ9NTI5 1447 aa35.61■■■■□ 3.29
TMEM88B-201ENST00000378821 DNAJC5Q9H3Z4 198 aa35.59■■■■□ 3.29
TMEM88B-201ENST00000378821 KIF21AQ7Z4S6 1674 aa35.56■■■■□ 3.28
TMEM88B-201ENST00000378821 TOP2AP11388 1531 aaKnown RBP35.45■■■■□ 3.27
TMEM88B-201ENST00000378821 CFTRP13569 1480 aa35.31■■■■□ 3.24
TMEM88B-201ENST00000378821 MRC2Q9UBG0 1479 aa35.28■■■■□ 3.24
TMEM88B-201ENST00000378821 WDR62O43379 1518 aa35.22■■■■□ 3.23
TMEM88B-201ENST00000378821 FANCD2Q9BXW9 1451 aa35.18■■■■□ 3.22
TMEM88B-201ENST00000378821 CEP164Q9UPV0 1460 aa35.17■■■■□ 3.22
TMEM88B-201ENST00000378821 CCDC88BA6NC98 1476 aa35.04■■■■□ 3.2
TMEM88B-201ENST00000378821 PRDM2Q13029 1718 aa34.98■■■■□ 3.19
TMEM88B-201ENST00000378821 URB2Q14146 1524 aaKnown RBP34.89■■■■□ 3.18
TMEM88B-201ENST00000378821 TOPBP1Q92547 1522 aa34.57■■■■□ 3.12
TMEM88B-201ENST00000378821 ABCC8Q09428 1581 aa34.56■■■■□ 3.12
TMEM88B-201ENST00000378821 IFT140Q96RY7 1462 aa34.5■■■■□ 3.11
TMEM88B-201ENST00000378821 DNMBPQ6XZF7 1577 aa34.47■■■■□ 3.11
TMEM88B-201ENST00000378821 ZNF608Q9ULD9 1512 aaPredicted RBP34.38■■■■□ 3.09
TMEM88B-201ENST00000378821 OSCARQ8IYS5 282 aa34.33■■■■□ 3.09
TMEM88B-201ENST00000378821 TARBP1Q13395 1621 aaKnown RBP34.28■■■■□ 3.08
TMEM88B-201ENST00000378821 POLA1P09884 1462 aaPredicted RBP34.22■■■■□ 3.07
TMEM88B-201ENST00000378821 EIF4G3O43432 1585 aaKnown RBP34.21■■■■□ 3.07
TMEM88B-201ENST00000378821 SUPT5HO00267 1087 aaKnown RBP34.14■■■■□ 3.06
TMEM88B-201ENST00000378821 AQRO60306 1485 aaKnown RBP eCLIP34.1■■■■□ 3.05
TMEM88B-201ENST00000378821 CUX1P39880 1505 aa34.09■■■■□ 3.05
TMEM88B-201ENST00000378821 SOGA1O94964 1423 aa34.06■■■■□ 3.04
TMEM88B-201ENST00000378821 RAD54L2Q9Y4B4 1467 aa34.06■■■■□ 3.04
TMEM88B-201ENST00000378821 FGD5Q6ZNL6 1462 aa34.03■■■■□ 3.04
TMEM88B-201ENST00000378821 WDR97A6NE52 1622 aa33.99■■■■□ 3.03
TMEM88B-201ENST00000378821 TRIM41Q8WV44 630 aa33.97■■■■□ 3.03
TMEM88B-201ENST00000378821 TDRD9Q8NDG6 1382 aaKnown RBP33.92■■■■□ 3.02
TMEM88B-201ENST00000378821 CHD1O14646 1710 aa33.9■■■■□ 3.02
TMEM88B-201ENST00000378821 RIMBP3CA6NJZ7 1639 aa33.85■■■■□ 3.01
TMEM88B-201ENST00000378821 RIMBP3BA6NNM3 1639 aa33.85■■■■□ 3.01
TMEM88B-201ENST00000378821 RIMBP3Q9UFD9 1639 aa33.85■■■■□ 3.01
TMEM88B-201ENST00000378821 ARHGEF11O15085 1522 aa33.78■■■■□ 3
TMEM88B-201ENST00000378821 SNAPC4Q5SXM2 1469 aa33.76■■■□□ 2.99
TMEM88B-201ENST00000378821 GRIN2BQ13224 1484 aa33.75■■■□□ 2.99
TMEM88B-201ENST00000378821 MAGI1Q96QZ7 1491 aaPredicted RBP33.74■■■□□ 2.99
TMEM88B-201ENST00000378821 ABCA10Q8WWZ4 1543 aa33.73■■■□□ 2.99
TMEM88B-201ENST00000378821 FBLN2P98095 1184 aa33.7■■■□□ 2.99
TMEM88B-201ENST00000378821 GAPVD1Q14C86 1478 aa33.66■■■□□ 2.98
TMEM88B-201ENST00000378821 BIVM-ERCC5R4GMW8 1640 aa33.65■■■□□ 2.98
TMEM88B-201ENST00000378821 TOP2BQ02880 1626 aa33.64■■■□□ 2.98
TMEM88B-201ENST00000378821 ABCA5Q8WWZ7 1642 aa33.64■■■□□ 2.98
TMEM88B-201ENST00000378821 PBRM1Q86U86 1689 aa33.63■■■□□ 2.97
TMEM88B-201ENST00000378821 SYNJ2O15056 1496 aa33.61■■■□□ 2.97
TMEM88B-201ENST00000378821 WRNQ14191 1432 aaPredicted RBP eCLIP33.61■■■□□ 2.97
TMEM88B-201ENST00000378821 CHMP7Q8WUX9 453 aaPredicted RBP33.58■■■□□ 2.97
TMEM88B-201ENST00000378821 CLASP1Q7Z460 1538 aa33.58■■■□□ 2.97
TMEM88B-201ENST00000378821 SYNJ1O43426 1573 aa33.57■■■□□ 2.96
TMEM88B-201ENST00000378821 ARAP1Q96P48 1450 aa33.46■■■□□ 2.95
TMEM88B-201ENST00000378821 CYB5RLQ6IPT4 315 aa33.44■■■□□ 2.94
TMEM88B-201ENST00000378821 ADAMTS12P58397 1594 aa33.34■■■□□ 2.93
TMEM88B-201ENST00000378821 GRIN2AQ12879 1464 aa33.31■■■□□ 2.92
TMEM88B-201ENST00000378821 ERICH3Q5RHP9 1530 aa33.31■■■□□ 2.92
TMEM88B-201ENST00000378821 FHAD1B1AJZ9 1412 aa33.27■■■□□ 2.92
TMEM88B-201ENST00000378821 NUP160Q12769 1436 aa33.23■■■□□ 2.91
TMEM88B-201ENST00000378821 CEP170Q5SW79 1584 aa33.17■■■□□ 2.9
TMEM88B-201ENST00000378821 SHROOM2Q13796 1616 aa33.07■■■□□ 2.88
TMEM88B-201ENST00000378821 ERCC6L2Q5T890 1561 aa33.02■■■□□ 2.88
TMEM88B-201ENST00000378821 KIF27Q86VH2 1401 aa32.95■■■□□ 2.87
TMEM88B-201ENST00000378821 IGF1RP08069 1367 aa32.95■■■□□ 2.86
TMEM88B-201ENST00000378821 TRHP20396 242 aaPredicted RBP32.9■■■□□ 2.86
TMEM88B-201ENST00000378821 CUL7Q14999 1698 aa32.86■■■□□ 2.85
TMEM88B-201ENST00000378821 RUSC2Q8N2Y8 1516 aa32.86■■■□□ 2.85
Retrieved 100 of 20,778 RNA–protein pairs in 41.1 ms