RNA–Protein interactions for RNA: ENST00000257632.9

UPK3B-201, Transcript of uroplakin 3B, humanhuman

APPRIS P5 TSL 2 BASIC

Gene UPK3B, Length 1,296 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPK3B-201ENST00000257632 NISCHQ9Y2I1 1504 aa45.18■■■■■ 4.82
UPK3B-201ENST00000257632 CCDC180Q9P1Z9 1646 aa40.19■■■■■ 4.02
UPK3B-201ENST00000257632 ABCC9O60706 1549 aa39.4■■■■□ 3.9
UPK3B-201ENST00000257632 DCAF8L2P0C7V8 631 aa37.85■■■■□ 3.65
UPK3B-201ENST00000257632 RB1CC1Q8TDY2 1594 aa37.83■■■■□ 3.65
UPK3B-201ENST00000257632 NACADO15069 1562 aa37.76■■■■□ 3.64
UPK3B-201ENST00000257632 ZCCHC6Q5VYS8 1495 aaKnown RBP37.64■■■■□ 3.62
UPK3B-201ENST00000257632 MYO15BQ96JP2 1530 aa37.5■■■■□ 3.59
UPK3B-201ENST00000257632 DCAF1Q9Y4B6 1507 aa37.36■■■■□ 3.57
UPK3B-201ENST00000257632 UNC13AQ9UPW8 1703 aa36.96■■■■□ 3.51
UPK3B-201ENST00000257632 DNAJC5BQ9UF47 199 aa36.96■■■■□ 3.51
UPK3B-201ENST00000257632 PABPN1Q86U42 306 aaKnown RBP eCLIP36.74■■■■□ 3.47
UPK3B-201ENST00000257632 SCRIBQ14160 1630 aa36.7■■■■□ 3.47
UPK3B-201ENST00000257632 BICRAQ9NZM4 1560 aa36.61■■■■□ 3.45
UPK3B-201ENST00000257632 SHROOM4Q9ULL8 1493 aa36.25■■■■□ 3.39
UPK3B-201ENST00000257632 EIF4G1Q04637 1599 aaKnown RBP35.69■■■■□ 3.3
UPK3B-201ENST00000257632 CC2D2AQ9P2K1 1620 aa35.57■■■■□ 3.28
UPK3B-201ENST00000257632 CECR2Q9BXF3 1484 aa35.47■■■■□ 3.27
UPK3B-201ENST00000257632 SMARCA4P51532 1647 aa35.08■■■■□ 3.21
UPK3B-201ENST00000257632 BAZ1AQ9NRL2 1556 aaPredicted RBP35.05■■■■□ 3.2
UPK3B-201ENST00000257632 ATAD2BQ9ULI0 1458 aa34.85■■■■□ 3.17
UPK3B-201ENST00000257632 SMARCA2P51531 1590 aa34.85■■■■□ 3.17
UPK3B-201ENST00000257632 MROH2BQ7Z745 1585 aa34.83■■■■□ 3.17
UPK3B-201ENST00000257632 NCAPD3P42695 1498 aa34.82■■■■□ 3.16
UPK3B-201ENST00000257632 PEG3Q9GZU2 1588 aa34.69■■■■□ 3.14
UPK3B-201ENST00000257632 HMGXB3Q12766 1538 aa34.67■■■■□ 3.14
UPK3B-201ENST00000257632 BAZ1BQ9UIG0 1483 aaKnown RBP34.62■■■■□ 3.13
UPK3B-201ENST00000257632 WIZO95785 1651 aa34.48■■■■□ 3.11
UPK3B-201ENST00000257632 RSF1Q96T23 1441 aaPredicted RBP34.43■■■■□ 3.1
UPK3B-201ENST00000257632 TOP2AP11388 1531 aaKnown RBP34.11■■■■□ 3.05
UPK3B-201ENST00000257632 ERCC6Q03468 1493 aa34.04■■■■□ 3.04
UPK3B-201ENST00000257632 NESP48681 1621 aa34.01■■■■□ 3.03
UPK3B-201ENST00000257632 DNAJC5Q9H3Z4 198 aa33.96■■■■□ 3.03
UPK3B-201ENST00000257632 LAMC3Q9Y6N6 1575 aa33.94■■■■□ 3.02
UPK3B-201ENST00000257632 CUX2O14529 1486 aa33.92■■■■□ 3.02
UPK3B-201ENST00000257632 CADPSQ9ULU8 1353 aa33.83■■■■□ 3.01
UPK3B-201ENST00000257632 PDS5BQ9NTI5 1447 aa33.71■■■□□ 2.99
UPK3B-201ENST00000257632 CCDC88BA6NC98 1476 aa33.69■■■□□ 2.98
UPK3B-201ENST00000257632 SUPT5HO00267 1087 aaKnown RBP33.67■■■□□ 2.98
UPK3B-201ENST00000257632 KIF21AQ7Z4S6 1674 aa33.63■■■□□ 2.97
UPK3B-201ENST00000257632 CFTRP13569 1480 aa33.62■■■□□ 2.97
UPK3B-201ENST00000257632 THOC2Q8NI27 1593 aaKnown RBP33.48■■■□□ 2.95
UPK3B-201ENST00000257632 FANCD2Q9BXW9 1451 aa33.46■■■□□ 2.95
UPK3B-201ENST00000257632 CEP164Q9UPV0 1460 aa33.44■■■□□ 2.94
UPK3B-201ENST00000257632 PRDM2Q13029 1718 aa33.43■■■□□ 2.94
UPK3B-201ENST00000257632 MRC2Q9UBG0 1479 aa33.37■■■□□ 2.93
UPK3B-201ENST00000257632 WDR62O43379 1518 aa33.23■■■□□ 2.91
UPK3B-201ENST00000257632 URB2Q14146 1524 aaKnown RBP33.1■■■□□ 2.89
UPK3B-201ENST00000257632 ABCC8Q09428 1581 aa32.93■■■□□ 2.86
UPK3B-201ENST00000257632 TOPBP1Q92547 1522 aa32.92■■■□□ 2.86
UPK3B-201ENST00000257632 DNMBPQ6XZF7 1577 aa32.9■■■□□ 2.86
UPK3B-201ENST00000257632 IFT140Q96RY7 1462 aa32.72■■■□□ 2.83
UPK3B-201ENST00000257632 CUX1P39880 1505 aa32.67■■■□□ 2.82
UPK3B-201ENST00000257632 POLA1P09884 1462 aaPredicted RBP32.64■■■□□ 2.82
UPK3B-201ENST00000257632 FGD5Q6ZNL6 1462 aa32.58■■■□□ 2.81
UPK3B-201ENST00000257632 TRIM41Q8WV44 630 aa32.57■■■□□ 2.8
UPK3B-201ENST00000257632 ZNF608Q9ULD9 1512 aaPredicted RBP32.55■■■□□ 2.8
UPK3B-201ENST00000257632 TARBP1Q13395 1621 aaKnown RBP32.54■■■□□ 2.8
UPK3B-201ENST00000257632 SOGA1O94964 1423 aa32.52■■■□□ 2.8
UPK3B-201ENST00000257632 RAD54L2Q9Y4B4 1467 aa32.51■■■□□ 2.79
UPK3B-201ENST00000257632 WRNQ14191 1432 aaPredicted RBP eCLIP32.51■■■□□ 2.79
UPK3B-201ENST00000257632 EIF4G3O43432 1585 aaKnown RBP32.45■■■□□ 2.78
UPK3B-201ENST00000257632 TOP2BQ02880 1626 aa32.41■■■□□ 2.78
UPK3B-201ENST00000257632 BIVM-ERCC5R4GMW8 1640 aa32.41■■■□□ 2.78
UPK3B-201ENST00000257632 SYNJ1O43426 1573 aa32.41■■■□□ 2.78
UPK3B-201ENST00000257632 AQRO60306 1485 aaKnown RBP eCLIP32.38■■■□□ 2.77
UPK3B-201ENST00000257632 OSCARQ8IYS5 282 aa32.35■■■□□ 2.77
UPK3B-201ENST00000257632 TDRD9Q8NDG6 1382 aaKnown RBP32.33■■■□□ 2.77
UPK3B-201ENST00000257632 WDR97A6NE52 1622 aa32.3■■■□□ 2.76
UPK3B-201ENST00000257632 ABCA10Q8WWZ4 1543 aa32.25■■■□□ 2.75
UPK3B-201ENST00000257632 GAPVD1Q14C86 1478 aa32.15■■■□□ 2.74
UPK3B-201ENST00000257632 GRIN2BQ13224 1484 aa32.14■■■□□ 2.74
UPK3B-201ENST00000257632 ABCA5Q8WWZ7 1642 aa32.12■■■□□ 2.73
UPK3B-201ENST00000257632 PBRM1Q86U86 1689 aa32.11■■■□□ 2.73
UPK3B-201ENST00000257632 SNAPC4Q5SXM2 1469 aa32.1■■■□□ 2.73
UPK3B-201ENST00000257632 FBLN2P98095 1184 aa32.06■■■□□ 2.72
UPK3B-201ENST00000257632 CHD1O14646 1710 aa32.06■■■□□ 2.72
UPK3B-201ENST00000257632 MAGI1Q96QZ7 1491 aaPredicted RBP32.05■■■□□ 2.72
UPK3B-201ENST00000257632 RIMBP3CA6NJZ7 1639 aa32.01■■■□□ 2.72
UPK3B-201ENST00000257632 RIMBP3BA6NNM3 1639 aa32.01■■■□□ 2.72
UPK3B-201ENST00000257632 RIMBP3Q9UFD9 1639 aa32.01■■■□□ 2.72
UPK3B-201ENST00000257632 CHMP7Q8WUX9 453 aaPredicted RBP31.95■■■□□ 2.71
UPK3B-201ENST00000257632 SYNJ2O15056 1496 aa31.92■■■□□ 2.7
UPK3B-201ENST00000257632 ARHGEF11O15085 1522 aa31.89■■■□□ 2.7
UPK3B-201ENST00000257632 ERICH3Q5RHP9 1530 aa31.87■■■□□ 2.69
UPK3B-201ENST00000257632 KIF27Q86VH2 1401 aa31.83■■■□□ 2.69
UPK3B-201ENST00000257632 ADAMTS12P58397 1594 aa31.83■■■□□ 2.69
UPK3B-201ENST00000257632 FHAD1B1AJZ9 1412 aa31.77■■■□□ 2.68
UPK3B-201ENST00000257632 GRIN2AQ12879 1464 aa31.72■■■□□ 2.67
UPK3B-201ENST00000257632 CLASP1Q7Z460 1538 aa31.65■■■□□ 2.66
UPK3B-201ENST00000257632 CYB5RLQ6IPT4 315 aa31.65■■■□□ 2.66
UPK3B-201ENST00000257632 IGF1RP08069 1367 aa31.64■■■□□ 2.66
UPK3B-201ENST00000257632 CUL7Q14999 1698 aa31.62■■■□□ 2.65
UPK3B-201ENST00000257632 ARAP1Q96P48 1450 aa31.57■■■□□ 2.64
UPK3B-201ENST00000257632 CEP170Q5SW79 1584 aa31.56■■■□□ 2.64
UPK3B-201ENST00000257632 NUP160Q12769 1436 aa31.55■■■□□ 2.64
UPK3B-201ENST00000257632 RUSC2Q8N2Y8 1516 aa31.51■■■□□ 2.63
UPK3B-201ENST00000257632 CARMIL1Q5VZK9 1371 aa31.5■■■□□ 2.63
UPK3B-201ENST00000257632 CHIC1Q5VXU3 224 aa31.38■■■□□ 2.61
UPK3B-201ENST00000257632 TRHP20396 242 aaPredicted RBP31.37■■■□□ 2.61
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms