Protein–RNA interactions for Protein: Q8NHS4

CLHC1, Clathrin heavy chain linker domain-containing protein 1, humanhuman

Predictions only

Length 586 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLHC1Q8NHS4 SCARB1-203ENST00000415380 2731 ntTSL 2 BASIC17.63■□□□□ 0.41
CLHC1Q8NHS4 C6orf223-203ENST00000442114 3109 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
CLHC1Q8NHS4 COPS7A-210ENST00000539735 1832 ntAPPRIS P1 TSL 5 BASIC17.63■□□□□ 0.41
CLHC1Q8NHS4 POR-209ENST00000439269 1858 ntTSL 2 BASIC17.63■□□□□ 0.41
CLHC1Q8NHS4 RAB1A-204ENST00000409892 2254 ntTSL 2 BASIC17.63■□□□□ 0.41
CLHC1Q8NHS4 AC036111.1-201ENST00000533973 1582 ntBASIC17.63■□□□□ 0.41
CLHC1Q8NHS4 HDAC10-201ENST00000216271 2687 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
CLHC1Q8NHS4 CD19-202ENST00000538922 1957 ntAPPRIS ALT2 TSL 5 BASIC17.63■□□□□ 0.41
CLHC1Q8NHS4 FAM50B-201ENST00000380272 1628 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
CLHC1Q8NHS4 TIMM17B-201ENST00000376582 950 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
CLHC1Q8NHS4 RAP1B-203ENST00000378985 1017 ntTSL 2 BASIC17.63■□□□□ 0.41
CLHC1Q8NHS4 CDKN1B-202ENST00000396340 897 ntTSL 3 BASIC17.63■□□□□ 0.41
CLHC1Q8NHS4 TNFRSF1B-204ENST00000536782 557 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
CLHC1Q8NHS4 RAP1B-221ENST00000540209 1264 ntTSL 2 BASIC17.63■□□□□ 0.41
CLHC1Q8NHS4 Z99916.2-201ENST00000604037 246 ntBASIC17.63■□□□□ 0.41
CLHC1Q8NHS4 AC026471.5-201ENST00000615068 467 ntBASIC17.63■□□□□ 0.41
CLHC1Q8NHS4 TARDBP-228ENST00000629725 1031 ntTSL 5 BASIC17.63■□□□□ 0.41
CLHC1Q8NHS4 AC215522.2-202ENST00000633163 1143 ntTSL 5 BASIC17.63■□□□□ 0.41
CLHC1Q8NHS4 SAYSD1-201ENST00000229903 2020 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
CLHC1Q8NHS4 HNRNPK-202ENST00000360384 2038 ntAPPRIS ALT1 TSL 1 (best) BASIC17.63■□□□□ 0.41
CLHC1Q8NHS4 CYP2D7-201ENST00000358097 1655 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
CLHC1Q8NHS4 ATRIP-203ENST00000357105 2403 ntTSL 2 BASIC17.63■□□□□ 0.41
CLHC1Q8NHS4 NMRK1-203ENST00000376811 2050 ntTSL 2 BASIC17.63■□□□□ 0.41
CLHC1Q8NHS4 IL6R-202ENST00000368485 5914 ntAPPRIS P4 TSL 1 (best) BASIC17.63■□□□□ 0.41
CLHC1Q8NHS4 SERPINH1-212ENST00000530284 1358 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
CLHC1Q8NHS4 AVL9-209ENST00000640103 1367 ntTSL 5 BASIC17.63■□□□□ 0.41
CLHC1Q8NHS4 KRCC1-201ENST00000347055 1753 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
CLHC1Q8NHS4 ZNF416-201ENST00000196489 2561 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
CLHC1Q8NHS4 TAP1-201ENST00000354258 2959 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
CLHC1Q8NHS4 STIM2-212ENST00000639640 2241 ntAPPRIS P3 TSL 1 (best) BASIC17.63■□□□□ 0.41
CLHC1Q8NHS4 KRT8P50-201ENST00000562022 1438 ntBASIC17.63■□□□□ 0.41
CLHC1Q8NHS4 LTB4R2-202ENST00000528054 3092 ntBASIC17.63■□□□□ 0.41
CLHC1Q8NHS4 PTPA-206ENST00000358994 2664 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
CLHC1Q8NHS4 TEFM-205ENST00000581216 1891 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
CLHC1Q8NHS4 ADORA2A-213ENST00000610595 2736 ntAPPRIS P1 TSL 2 BASIC17.63■□□□□ 0.41
CLHC1Q8NHS4 MMP9-201ENST00000372330 2336 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
CLHC1Q8NHS4 KLHL31-201ENST00000370905 5743 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
CLHC1Q8NHS4 STEAP1B-201ENST00000404369 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
CLHC1Q8NHS4 SRRM2-201ENST00000301740 9353 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
CLHC1Q8NHS4 SCD5-201ENST00000273908 1995 ntTSL 2 BASIC17.62■□□□□ 0.41
CLHC1Q8NHS4 C19orf57-208ENST00000591586 1559 ntAPPRIS ALT2 TSL 5 BASIC17.62■□□□□ 0.41
CLHC1Q8NHS4 TM2D2-201ENST00000397070 1631 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
CLHC1Q8NHS4 MTMR1-208ENST00000445323 4516 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
CLHC1Q8NHS4 NTRK1-203ENST00000392302 2609 ntTSL 5 BASIC17.62■□□□□ 0.41
CLHC1Q8NHS4 DCHS2-201ENST00000339452 5064 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
CLHC1Q8NHS4 PCBP3-205ENST00000400310 2168 ntTSL 2 BASIC17.62■□□□□ 0.41
CLHC1Q8NHS4 FMR1-202ENST00000334557 1295 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
CLHC1Q8NHS4 ACVR1C-203ENST00000348328 1270 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
CLHC1Q8NHS4 MDFI-202ENST00000373050 809 ntTSL 2 BASIC17.62■□□□□ 0.41
CLHC1Q8NHS4 COX6C-208ENST00000522940 694 ntAPPRIS P1 TSL 3 BASIC17.62■□□□□ 0.41
CLHC1Q8NHS4 SDR39U1-202ENST00000538105 1041 ntTSL 2 BASIC17.62■□□□□ 0.41
CLHC1Q8NHS4 AL049780.2-201ENST00000556236 367 ntTSL 3 BASIC17.62■□□□□ 0.41
CLHC1Q8NHS4 KLHL26-205ENST00000599006 989 ntTSL 5 BASIC17.62■□□□□ 0.41
CLHC1Q8NHS4 AL158151.3-201ENST00000599172 696 ntTSL 5 BASIC17.62■□□□□ 0.41
CLHC1Q8NHS4 ARID3A-201ENST00000263620 5941 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
CLHC1Q8NHS4 GPS1-201ENST00000306823 1842 ntAPPRIS P3 TSL 1 (best) BASIC17.62■□□□□ 0.41
CLHC1Q8NHS4 TBXA2R-204ENST00000589966 1814 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
CLHC1Q8NHS4 SLC26A11-212ENST00000572725 1862 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
CLHC1Q8NHS4 ZIC1-201ENST00000282928 5241 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
CLHC1Q8NHS4 RPN2-201ENST00000237530 2515 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
CLHC1Q8NHS4 TTLL8-201ENST00000266182 2505 ntAPPRIS ALT2 TSL 5 BASIC17.62■□□□□ 0.41
CLHC1Q8NHS4 TRAPPC12-201ENST00000324266 2508 ntAPPRIS P2 TSL 1 (best) BASIC17.62■□□□□ 0.41
CLHC1Q8NHS4 STRA6-209ENST00000563965 2565 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
CLHC1Q8NHS4 RAB4B-EGLN2-201ENST00000594136 2554 ntAPPRIS P1 TSL 2 BASIC17.62■□□□□ 0.41
CLHC1Q8NHS4 TMPRSS12-201ENST00000398458 1450 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
CLHC1Q8NHS4 SMPD3-211ENST00000568373 2073 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
CLHC1Q8NHS4 TPD52L1-202ENST00000368388 2147 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
CLHC1Q8NHS4 ADAMTS7-201ENST00000388820 5490 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
CLHC1Q8NHS4 ACSS2-201ENST00000253382 2925 ntTSL 2 BASIC17.61■□□□□ 0.41
CLHC1Q8NHS4 AC034236.2-201ENST00000606662 1610 ntBASIC17.61■□□□□ 0.41
CLHC1Q8NHS4 SAMD3-202ENST00000368134 2377 ntAPPRIS P1 TSL 2 BASIC17.61■□□□□ 0.41
CLHC1Q8NHS4 PLCB3-204ENST00000540288 4469 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
CLHC1Q8NHS4 FDXR-203ENST00000420580 1705 ntTSL 2 BASIC17.61■□□□□ 0.41
CLHC1Q8NHS4 HOTAIR-201ENST00000424518 2421 ntTSL 5 BASIC17.61■□□□□ 0.41
CLHC1Q8NHS4 PDE3B-201ENST00000282096 6076 ntAPPRIS P2 TSL 1 (best) BASIC17.61■□□□□ 0.41
CLHC1Q8NHS4 PCDHA8-201ENST00000378123 2616 ntAPPRIS ALT2 BASIC17.61■□□□□ 0.41
CLHC1Q8NHS4 PPP1R7-202ENST00000272983 1954 ntTSL 2 BASIC17.61■□□□□ 0.41
CLHC1Q8NHS4 ELMOD1-202ENST00000443271 1990 ntAPPRIS P1 TSL 2 BASIC17.61■□□□□ 0.41
CLHC1Q8NHS4 TPPP3-201ENST00000290942 1116 ntAPPRIS P1 TSL 2 BASIC17.61■□□□□ 0.41
CLHC1Q8NHS4 TMSB4X-201ENST00000380633 495 ntAPPRIS P1 TSL 3 BASIC17.61■□□□□ 0.41
CLHC1Q8NHS4 TPPP3-202ENST00000393957 1058 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
CLHC1Q8NHS4 UBB-203ENST00000395839 1012 ntAPPRIS P1 TSL 2 BASIC17.61■□□□□ 0.41
CLHC1Q8NHS4 AL390728.5-201ENST00000428687 706 ntTSL 3 BASIC17.61■□□□□ 0.41
CLHC1Q8NHS4 TNFRSF12A-206ENST00000575124 1133 ntTSL 2 BASIC17.61■□□□□ 0.41
CLHC1Q8NHS4 USP36-216ENST00000589424 970 ntTSL 5 BASIC17.61■□□□□ 0.41
CLHC1Q8NHS4 AP001412.1-201ENST00000608405 714 ntBASIC17.61■□□□□ 0.41
CLHC1Q8NHS4 PLCH2-203ENST00000378486 4837 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
CLHC1Q8NHS4 PLCH2-204ENST00000419816 4837 ntAPPRIS P1 TSL 5 BASIC17.61■□□□□ 0.41
CLHC1Q8NHS4 RNF170-205ENST00000526349 1338 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
CLHC1Q8NHS4 TEX13A-202ENST00000609007 1349 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
CLHC1Q8NHS4 RELA-226ENST00000612991 2266 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
CLHC1Q8NHS4 ACADS-202ENST00000411593 1398 ntTSL 2 BASIC17.61■□□□□ 0.41
CLHC1Q8NHS4 CORO6-212ENST00000584969 1416 ntAPPRIS ALT1 TSL 5 BASIC17.61■□□□□ 0.41
CLHC1Q8NHS4 FMR1-205ENST00000370475 4308 ntAPPRIS P3 TSL 1 (best) BASIC17.61■□□□□ 0.41
CLHC1Q8NHS4 DDX31-201ENST00000310532 2408 ntTSL 2 BASIC17.61■□□□□ 0.41
CLHC1Q8NHS4 FHL1-205ENST00000370690 2441 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
CLHC1Q8NHS4 UBAP1-203ENST00000379186 2524 ntTSL 5 BASIC17.61■□□□□ 0.41
CLHC1Q8NHS4 PHKG2-202ENST00000424889 1566 ntTSL 2 BASIC17.61■□□□□ 0.41
CLHC1Q8NHS4 PIF1-201ENST00000268043 2687 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
CLHC1Q8NHS4 PEPD-203ENST00000436370 1638 ntTSL 2 BASIC17.61■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 52.2 ms