RNA–Protein interactions for RNA: ENST00000372330.3

MMP9-201, Transcript of matrix metallopeptidase 9, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MMP9, Length 2,336 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MMP9-201ENST00000372330 NISCHQ9Y2I1 1504 aa36.61■■■■□ 3.45
MMP9-201ENST00000372330 CCDC180Q9P1Z9 1646 aa31.52■■■□□ 2.64
MMP9-201ENST00000372330 SHROOM4Q9ULL8 1493 aa30.99■■■□□ 2.55
MMP9-201ENST00000372330 HRCP23327 699 aa30.96■■■□□ 2.55
MMP9-201ENST00000372330 ZCCHC6Q5VYS8 1495 aaKnown RBP30.95■■■□□ 2.55
MMP9-201ENST00000372330 PELP1Q8IZL8 1130 aaKnown RBP30.75■■■□□ 2.51
MMP9-201ENST00000372330 DCAF8L2P0C7V8 631 aa30.35■■■□□ 2.45
MMP9-201ENST00000372330 SUPT5HO00267 1087 aaKnown RBP30.22■■■□□ 2.43
MMP9-201ENST00000372330 DCAF1Q9Y4B6 1507 aa30.15■■■□□ 2.42
MMP9-201ENST00000372330 PCGF6Q9BYE7 350 aa29.94■■■□□ 2.38
MMP9-201ENST00000372330 PPARGC1BQ86YN6 1023 aaKnown RBP29.91■■■□□ 2.38
MMP9-201ENST00000372330 MYT1Q01538 1121 aa29.81■■■□□ 2.36
MMP9-201ENST00000372330 ABCC9O60706 1549 aa29.61■■■□□ 2.33
MMP9-201ENST00000372330 MYO15BQ96JP2 1530 aa29.58■■■□□ 2.33
MMP9-201ENST00000372330 CHIC1Q5VXU3 224 aa29.46■■■□□ 2.31
MMP9-201ENST00000372330 SCAF1Q9H7N4 1312 aaKnown RBP29.33■■■□□ 2.29
MMP9-201ENST00000372330 SCRIBQ14160 1630 aa29.3■■■□□ 2.28
MMP9-201ENST00000372330 NACADO15069 1562 aa29.26■■■□□ 2.27
MMP9-201ENST00000372330 ZEB1P37275 1124 aaPredicted RBP29.23■■■□□ 2.27
MMP9-201ENST00000372330 TRIM26Q12899 539 aaPredicted RBP29.15■■■□□ 2.26
MMP9-201ENST00000372330 RB1CC1Q8TDY2 1594 aa28.92■■■□□ 2.22
MMP9-201ENST00000372330 RSF1Q96T23 1441 aaPredicted RBP28.87■■■□□ 2.21
MMP9-201ENST00000372330 ACIN1Q9UKV3 1341 aaKnown RBP28.66■■■□□ 2.18
MMP9-201ENST00000372330 LOC105371045A0A1W2PR82 267 aa28.6■■■□□ 2.17
MMP9-201ENST00000372330 CECR2Q9BXF3 1484 aa28.57■■■□□ 2.16
MMP9-201ENST00000372330 UNC13AQ9UPW8 1703 aa28.49■■■□□ 2.15
MMP9-201ENST00000372330 MROH2BQ7Z745 1585 aa28.44■■■□□ 2.14
MMP9-201ENST00000372330 NEUROD1Q13562 356 aa28.4■■■□□ 2.14
MMP9-201ENST00000372330 CENPBP07199 599 aaPredicted RBP28.36■■■□□ 2.13
MMP9-201ENST00000372330 GTF3C3Q9Y5Q9 886 aa28.32■■■□□ 2.12
MMP9-201ENST00000372330 WIZO95785 1651 aa28.29■■■□□ 2.12
MMP9-201ENST00000372330 TRIM41Q8WV44 630 aa28.25■■■□□ 2.11
MMP9-201ENST00000372330 BAZ1AQ9NRL2 1556 aaPredicted RBP28.17■■■□□ 2.1
MMP9-201ENST00000372330 TTBK1Q5TCY1 1321 aaPredicted RBP28.13■■■□□ 2.09
MMP9-201ENST00000372330 BICRAQ9NZM4 1560 aa28.13■■■□□ 2.09
MMP9-201ENST00000372330 PABPN1Q86U42 306 aaKnown RBP eCLIP28.12■■■□□ 2.09
MMP9-201ENST00000372330 SMARCA4P51532 1647 aa28.02■■■□□ 2.08
MMP9-201ENST00000372330 FAM9AQ8IZU1 332 aaPredicted RBP27.93■■■□□ 2.06
MMP9-201ENST00000372330 DIEXFQ68CQ4 756 aaKnown RBP27.93■■■□□ 2.06
MMP9-201ENST00000372330 TOP2AP11388 1531 aaKnown RBP27.85■■■□□ 2.05
MMP9-201ENST00000372330 EIF4G1Q04637 1599 aaKnown RBP27.84■■■□□ 2.05
MMP9-201ENST00000372330 EHMT2Q96KQ7 1210 aa27.73■■■□□ 2.03
MMP9-201ENST00000372330 CCDC88BA6NC98 1476 aa27.68■■■□□ 2.02
MMP9-201ENST00000372330 CCER1Q8TC90 406 aaPredicted RBP27.68■■■□□ 2.02
MMP9-201ENST00000372330 SMARCA2P51531 1590 aa27.67■■■□□ 2.02
MMP9-201ENST00000372330 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP27.57■■■□□ 2
MMP9-201ENST00000372330 ABCC8Q09428 1581 aa27.56■■■□□ 2
MMP9-201ENST00000372330 PEG3Q9GZU2 1588 aa27.55■■■□□ 2
MMP9-201ENST00000372330 ATAD2BQ9ULI0 1458 aa27.44■■□□□ 1.98
MMP9-201ENST00000372330 ZNF316A6NFI3 1004 aaPredicted RBP27.38■■□□□ 1.97
MMP9-201ENST00000372330 BCL11AQ9H165 835 aa27.33■■□□□ 1.97
MMP9-201ENST00000372330 BAZ1BQ9UIG0 1483 aaKnown RBP27.31■■□□□ 1.96
MMP9-201ENST00000372330 CLSPNQ9HAW4 1339 aa27.31■■□□□ 1.96
MMP9-201ENST00000372330 ANP32EQ9BTT0 268 aa27.25■■□□□ 1.95
MMP9-201ENST00000372330 YTHDC1Q96MU7 727 aaKnown RBP27.24■■□□□ 1.95
MMP9-201ENST00000372330 SOGA1O94964 1423 aa27.23■■□□□ 1.95
MMP9-201ENST00000372330 EEA1Q15075 1411 aa27.2■■□□□ 1.95
MMP9-201ENST00000372330 RUSC2Q8N2Y8 1516 aa27.15■■□□□ 1.94
MMP9-201ENST00000372330 WRNQ14191 1432 aaPredicted RBP eCLIP27.14■■□□□ 1.93
MMP9-201ENST00000372330 CSRNP3Q8WYN3 585 aa27.09■■□□□ 1.93
MMP9-201ENST00000372330 MIER1Q8N108 512 aa27.08■■□□□ 1.93
MMP9-201ENST00000372330 TNIKQ9UKE5 1360 aa27.07■■□□□ 1.92
MMP9-201ENST00000372330 CEP162Q5TB80 1403 aa27.06■■□□□ 1.92
MMP9-201ENST00000372330 NCAPD3P42695 1498 aa27.05■■□□□ 1.92
MMP9-201ENST00000372330 HMGXB3Q12766 1538 aa27.01■■□□□ 1.92
MMP9-201ENST00000372330 SYNJ1O43426 1573 aa27.01■■□□□ 1.91
MMP9-201ENST00000372330 GOLGA3Q08378 1498 aa26.94■■□□□ 1.9
MMP9-201ENST00000372330 SUPT16HQ9Y5B9 1047 aaKnown RBP26.93■■□□□ 1.9
MMP9-201ENST00000372330 UBTFP17480 764 aaKnown RBP26.9■■□□□ 1.9
MMP9-201ENST00000372330 TSHZ2Q9NRE2 1034 aa26.9■■□□□ 1.9
MMP9-201ENST00000372330 CEP164Q9UPV0 1460 aa26.82■■□□□ 1.88
MMP9-201ENST00000372330 KIF21BO75037 1637 aa26.8■■□□□ 1.88
MMP9-201ENST00000372330 CC2D2AQ9P2K1 1620 aa26.73■■□□□ 1.87
MMP9-201ENST00000372330 TOP2BQ02880 1626 aa26.72■■□□□ 1.87
MMP9-201ENST00000372330 BIVM-ERCC5R4GMW8 1640 aa26.63■■□□□ 1.85
MMP9-201ENST00000372330 CFTRP13569 1480 aa26.63■■□□□ 1.85
MMP9-201ENST00000372330 CLIP1P30622 1438 aa26.59■■□□□ 1.85
MMP9-201ENST00000372330 RAPGEF2Q9Y4G8 1499 aa26.59■■□□□ 1.85
MMP9-201ENST00000372330 CUX1P39880 1505 aa26.49■■□□□ 1.83
MMP9-201ENST00000372330 VPS8Q8N3P4 1428 aa26.49■■□□□ 1.83
MMP9-201ENST00000372330 PRDM2Q13029 1718 aa26.48■■□□□ 1.83
MMP9-201ENST00000372330 CADPSQ9ULU8 1353 aa26.45■■□□□ 1.83
MMP9-201ENST00000372330 ERICH3Q5RHP9 1530 aa26.42■■□□□ 1.82
MMP9-201ENST00000372330 PRXQ9BXM0 1461 aa26.42■■□□□ 1.82
MMP9-201ENST00000372330 PRKCSHP14314 528 aaPredicted RBP26.42■■□□□ 1.82
MMP9-201ENST00000372330 RANGAP1P46060 587 aaPredicted RBP26.4■■□□□ 1.82
MMP9-201ENST00000372330 KIF27Q86VH2 1401 aa26.33■■□□□ 1.81
MMP9-201ENST00000372330 APLP2Q06481 763 aa26.31■■□□□ 1.8
MMP9-201ENST00000372330 ERICH6Q7L0X2 663 aa26.28■■□□□ 1.8
MMP9-201ENST00000372330 RBM19Q9Y4C8 960 aaKnown RBP26.27■■□□□ 1.8
MMP9-201ENST00000372330 HNRNPUL2Q1KMD3 747 aaKnown RBP26.2■■□□□ 1.79
MMP9-201ENST00000372330 FANCD2Q9BXW9 1451 aa26.19■■□□□ 1.78
MMP9-201ENST00000372330 NESP48681 1621 aa26.18■■□□□ 1.78
MMP9-201ENST00000372330 ARAP1Q96P48 1450 aa26.18■■□□□ 1.78
MMP9-201ENST00000372330 MYT1LQ9UL68 1186 aa26.16■■□□□ 1.78
MMP9-201ENST00000372330 DNAJC5BQ9UF47 199 aa26.13■■□□□ 1.77
MMP9-201ENST00000372330 FGD5Q6ZNL6 1462 aa26.1■■□□□ 1.77
MMP9-201ENST00000372330 FKBP8Q14318 412 aa26.09■■□□□ 1.77
MMP9-201ENST00000372330 CUX2O14529 1486 aa26.07■■□□□ 1.76
MMP9-201ENST00000372330 BCANQ96GW7 911 aa26.04■■□□□ 1.76
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms