Protein–RNA interactions for Protein: Q9UIU6

SIX4, Homeobox protein SIX4, humanhuman

Predictions only

Length 781 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX4Q9UIU6 AC079031.1-201ENST00000542627 1035 ntTSL 3 BASIC19.62■□□□□ 0.73
SIX4Q9UIU6 AC027682.5-201ENST00000567122 530 ntTSL 3 BASIC19.62■□□□□ 0.73
SIX4Q9UIU6 PAQR4-204ENST00000574988 869 ntTSL 2 BASIC19.62■□□□□ 0.73
SIX4Q9UIU6 AC004771.4-201ENST00000576752 474 ntTSL 5 BASIC19.62■□□□□ 0.73
SIX4Q9UIU6 CDH24-205ENST00000554034 2759 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
SIX4Q9UIU6 NUMBL-202ENST00000540131 1931 ntAPPRIS ALT2 TSL 2 BASIC19.62■□□□□ 0.73
SIX4Q9UIU6 PDE8A-202ENST00000339708 2663 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
SIX4Q9UIU6 METTL21A-208ENST00000448007 1770 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
SIX4Q9UIU6 SMIM10L2A-201ENST00000417443 5230 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
SIX4Q9UIU6 RPL32-202ENST00000396953 1734 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
SIX4Q9UIU6 UNC5CL-202ENST00000373164 1620 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
SIX4Q9UIU6 ARHGAP28-203ENST00000383472 2295 ntAPPRIS ALT2 TSL 5 BASIC19.62■□□□□ 0.73
SIX4Q9UIU6 CDC42BPB-201ENST00000361246 6758 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
SIX4Q9UIU6 NUMBL-207ENST00000598779 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
SIX4Q9UIU6 FKRP-202ENST00000391909 2801 ntAPPRIS P1 TSL 2 BASIC19.61■□□□□ 0.73
SIX4Q9UIU6 TMEM250-201ENST00000418388 2823 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
SIX4Q9UIU6 CYTH1-209ENST00000589296 2159 ntTSL 5 BASIC19.61■□□□□ 0.73
SIX4Q9UIU6 KCNQ2-205ENST00000360480 2775 ntAPPRIS ALT2 TSL 5 BASIC19.61■□□□□ 0.73
SIX4Q9UIU6 PTGER3-202ENST00000351052 1404 ntAPPRIS ALT2 TSL 5 BASIC19.61■□□□□ 0.73
SIX4Q9UIU6 GRIK4-205ENST00000527524 5861 ntAPPRIS P1 TSL 2 BASIC19.61■□□□□ 0.73
SIX4Q9UIU6 NOL3-201ENST00000268605 1394 ntAPPRIS P3 TSL 3 BASIC19.61■□□□□ 0.73
SIX4Q9UIU6 ADCK5-201ENST00000308860 1949 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
SIX4Q9UIU6 HMGA1-201ENST00000311487 1920 ntAPPRIS P4 TSL 1 (best) BASIC19.61■□□□□ 0.73
SIX4Q9UIU6 SMIM24-201ENST00000215531 1329 ntAPPRIS P2 TSL 1 (best) BASIC19.61■□□□□ 0.73
SIX4Q9UIU6 AP003774.1-201ENST00000316124 2340 ntTSL 2 BASIC19.61■□□□□ 0.73
SIX4Q9UIU6 TMEM88-201ENST00000301599 875 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
SIX4Q9UIU6 ISCU-208ENST00000539593 1071 ntTSL 2 BASIC19.61■□□□□ 0.73
SIX4Q9UIU6 ABCD4-228ENST00000557588 763 ntTSL 3 BASIC19.61■□□□□ 0.73
SIX4Q9UIU6 AC132938.3-201ENST00000579095 357 ntTSL 2 BASIC19.61■□□□□ 0.73
SIX4Q9UIU6 AC020558.2-201ENST00000582325 795 ntTSL 3 BASIC19.61■□□□□ 0.73
SIX4Q9UIU6 GPR32P1-201ENST00000601788 811 ntBASIC19.61■□□□□ 0.73
SIX4Q9UIU6 SPINK2-207ENST00000631082 392 ntTSL 5 BASIC19.61■□□□□ 0.73
SIX4Q9UIU6 CDK10-202ENST00000353379 1798 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
SIX4Q9UIU6 CABP7-201ENST00000216144 3259 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
SIX4Q9UIU6 PLA2G2F-201ENST00000375102 2723 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
SIX4Q9UIU6 PSMD11-202ENST00000457654 2159 ntAPPRIS P1 TSL 2 BASIC19.61■□□□□ 0.73
SIX4Q9UIU6 CAMKK2-207ENST00000404169 2116 ntAPPRIS P4 TSL 1 (best) BASIC19.61■□□□□ 0.73
SIX4Q9UIU6 COPS7A-215ENST00000543155 2127 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
SIX4Q9UIU6 ABCG4-206ENST00000622721 2553 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
SIX4Q9UIU6 HCG18-235ENST00000426882 4862 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
SIX4Q9UIU6 HIBADH-201ENST00000265395 1990 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
SIX4Q9UIU6 WNT8A-204ENST00000506684 1543 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
SIX4Q9UIU6 GBGT1-208ENST00000540636 1934 ntTSL 2 BASIC19.61■□□□□ 0.73
SIX4Q9UIU6 BANP-202ENST00000355022 2164 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
SIX4Q9UIU6 BID-205ENST00000399774 2167 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
SIX4Q9UIU6 UPF1-207ENST00000599848 5311 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
SIX4Q9UIU6 RNF114-201ENST00000244061 2503 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
SIX4Q9UIU6 HTRA3-201ENST00000307358 2541 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
SIX4Q9UIU6 AC087500.1-202ENST00000571689 1715 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
SIX4Q9UIU6 UBC-206ENST00000538617 1303 ntTSL 5 BASIC19.6■□□□□ 0.73
SIX4Q9UIU6 KCNN4-209ENST00000615047 2029 ntTSL 5 BASIC19.6■□□□□ 0.73
SIX4Q9UIU6 CTSD-212ENST00000637815 2003 ntAPPRIS ALT2 TSL 5 BASIC19.6■□□□□ 0.73
SIX4Q9UIU6 HSD17B10-201ENST00000168216 960 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
SIX4Q9UIU6 GUCA1B-201ENST00000230361 1113 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
SIX4Q9UIU6 SUSD4-203ENST00000344029 1056 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
SIX4Q9UIU6 AC115618.1-201ENST00000376775 549 ntTSL 3 BASIC19.6■□□□□ 0.73
SIX4Q9UIU6 VKORC1-205ENST00000394975 1012 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
SIX4Q9UIU6 UPK3BP1-201ENST00000428678 509 ntBASIC19.6■□□□□ 0.73
SIX4Q9UIU6 LEF1-AS1-201ENST00000436413 1045 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
SIX4Q9UIU6 AC113404.2-201ENST00000507884 177 ntBASIC19.6■□□□□ 0.73
SIX4Q9UIU6 CSRP1-214ENST00000531916 890 ntTSL 5 BASIC19.6■□□□□ 0.73
SIX4Q9UIU6 PPOX-214ENST00000535223 664 ntTSL 3 BASIC19.6■□□□□ 0.73
SIX4Q9UIU6 AC016582.2-201ENST00000591908 446 ntTSL 3 BASIC19.6■□□□□ 0.73
SIX4Q9UIU6 NTF4-201ENST00000593537 932 ntAPPRIS P1 BASIC19.6■□□□□ 0.73
SIX4Q9UIU6 AC004263.2-201ENST00000617183 678 ntBASIC19.6■□□□□ 0.73
SIX4Q9UIU6 AL807752.6-202ENST00000622933 765 ntAPPRIS P5 TSL 3 BASIC19.6■□□□□ 0.73
SIX4Q9UIU6 KCNE1B-204ENST00000623803 811 ntAPPRIS P2 TSL 1 (best) BASIC19.6■□□□□ 0.73
SIX4Q9UIU6 ENTPD6-201ENST00000354989 2708 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
SIX4Q9UIU6 PIP4K2C-202ENST00000422156 1558 ntTSL 2 BASIC19.6■□□□□ 0.73
SIX4Q9UIU6 LONP1-215ENST00000593119 2918 ntTSL 2 BASIC19.6■□□□□ 0.73
SIX4Q9UIU6 MID1IP1-202ENST00000378474 1889 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
SIX4Q9UIU6 POLR2C-201ENST00000219252 2057 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
SIX4Q9UIU6 LRRC20-205ENST00000395010 2959 ntTSL 3 BASIC19.59■□□□□ 0.73
SIX4Q9UIU6 SOD2-206ENST00000452684 2045 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
SIX4Q9UIU6 PTPRN2-204ENST00000404321 1374 ntTSL 5 BASIC19.59■□□□□ 0.73
SIX4Q9UIU6 AKR1A1-214ENST00000621846 1360 ntAPPRIS P1 TSL 5 BASIC19.59■□□□□ 0.73
SIX4Q9UIU6 AC016734.2-201ENST00000624325 1377 ntBASIC19.59■□□□□ 0.73
SIX4Q9UIU6 TIMM13-201ENST00000215570 1973 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
SIX4Q9UIU6 PLD3-205ENST00000409419 1966 ntAPPRIS P1 TSL 5 BASIC19.59■□□□□ 0.73
SIX4Q9UIU6 PDE9A-209ENST00000398227 1606 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
SIX4Q9UIU6 PCDH8-202ENST00000377942 5088 ntAPPRIS P4 TSL 1 (best) BASIC19.59■□□□□ 0.73
SIX4Q9UIU6 RPRD1A-201ENST00000357384 1850 ntAPPRIS P1 TSL 5 BASIC19.59■□□□□ 0.73
SIX4Q9UIU6 RABAC1-201ENST00000222008 821 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
SIX4Q9UIU6 TMEM171-201ENST00000287773 1247 ntAPPRIS ALT1 TSL 5 BASIC19.59■□□□□ 0.73
SIX4Q9UIU6 AURKAIP1-202ENST00000338338 1047 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
SIX4Q9UIU6 UBE2C-204ENST00000356455 850 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
SIX4Q9UIU6 DARS-AS1-202ENST00000419808 772 ntTSL 5 BASIC19.59■□□□□ 0.73
SIX4Q9UIU6 PLPP5-202ENST00000422581 853 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
SIX4Q9UIU6 TSPY22P-201ENST00000427496 604 ntBASIC19.59■□□□□ 0.73
SIX4Q9UIU6 AC092159.3-201ENST00000439196 571 ntTSL 4 BASIC19.59■□□□□ 0.73
SIX4Q9UIU6 VCX3B-203ENST00000444481 812 ntAPPRIS ALT2 TSL 5 BASIC19.59■□□□□ 0.73
SIX4Q9UIU6 ENDOV-202ENST00000517295 908 ntTSL 3 BASIC19.59■□□□□ 0.73
SIX4Q9UIU6 RABAC1-208ENST00000601078 728 ntTSL 3 BASIC19.59■□□□□ 0.73
SIX4Q9UIU6 APBB1-215ENST00000608394 2128 ntTSL 5 BASIC19.59■□□□□ 0.73
SIX4Q9UIU6 APBB1-222ENST00000610474 2147 ntTSL 5 BASIC19.59■□□□□ 0.73
SIX4Q9UIU6 VCX3A-203ENST00000612369 812 ntAPPRIS ALT2 TSL 5 BASIC19.59■□□□□ 0.73
SIX4Q9UIU6 SHISA5-220ENST00000619810 2385 ntTSL 2 BASIC19.59■□□□□ 0.73
SIX4Q9UIU6 CCDC43-201ENST00000315286 2082 ntAPPRIS P2 TSL 1 (best) BASIC19.59■□□□□ 0.73
SIX4Q9UIU6 PHGDH-209ENST00000641074 1780 ntBASIC19.59■□□□□ 0.73
SIX4Q9UIU6 LRCH4-201ENST00000310300 2552 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 24.9 ms