Protein–RNA interactions for Protein: Q8NHQ9

DDX55, ATP-dependent RNA helicase DDX55, humanhuman

Known RBP eCLIP

Length 600 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55Q8NHQ9 ZNF512B-201ENST00000369888 5919 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.642e-7■□□□□ 10.5
DDX55Q8NHQ9 FCGRT-211ENST00000598076 676 ntTSL 316.56■□□□□ 0.241e-7■□□□□ 10.5
DDX55Q8NHQ9 ALKBH5-203ENST00000541285 1605 ntTSL 1 (best) BASIC21.53■■□□□ 1.042e-15■□□□□ 10.5
DDX55Q8NHQ9 RBM22-204ENST00000520132 2067 ntTSL 210.75□□□□□ -0.692e-9■□□□□ 10.5
DDX55Q8NHQ9 RBM22-201ENST00000199814 2342 ntAPPRIS P1 TSL 1 (best) BASIC10.56□□□□□ -0.722e-9■□□□□ 10.5
DDX55Q8NHQ9 CYBA-202ENST00000561972 464 ntTSL 319.29■□□□□ 0.684e-22■□□□□ 10.5
DDX55Q8NHQ9 BRI3-201ENST00000297290 780 ntAPPRIS P1 TSL 1 (best) BASIC28.48■■■□□ 2.152e-8■□□□□ 10.5
DDX55Q8NHQ9 BRI3-207ENST00000539286 699 ntTSL 2 BASIC25.53■■□□□ 1.682e-8■□□□□ 10.5
DDX55Q8NHQ9 BRI3-202ENST00000456357 667 ntTSL 221.76■■□□□ 1.072e-8■□□□□ 10.5
DDX55Q8NHQ9 PTOV1-205ENST00000595934 1880 nt26.45■■□□□ 1.827e-12■□□□□ 10.5
DDX55Q8NHQ9 PTOV1-207ENST00000596424 625 ntTSL 222.59■■□□□ 1.217e-12■□□□□ 10.5
DDX55Q8NHQ9 CARHSP1-201ENST00000311052 746 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.127e-12■□□□□ 10.5
DDX55Q8NHQ9 CARHSP1-219ENST00000618335 2972 ntAPPRIS P1 TSL 4 BASIC19.92■□□□□ 0.787e-12■□□□□ 10.5
DDX55Q8NHQ9 CARHSP1-203ENST00000561530 729 ntAPPRIS P1 TSL 3 BASIC17.57■□□□□ 0.47e-12■□□□□ 10.5
DDX55Q8NHQ9 TONSL-202ENST00000497613 6607 ntTSL 216.36■□□□□ 0.217e-12■□□□□ 10.5
DDX55Q8NHQ9 CARHSP1-208ENST00000567554 598 ntAPPRIS P1 TSL 2 BASIC15.92■□□□□ 0.147e-12■□□□□ 10.5
DDX55Q8NHQ9 CARHSP1-220ENST00000619881 2849 ntAPPRIS P1 TSL 3 BASIC15.16■□□□□ 0.027e-12■□□□□ 10.5
DDX55Q8NHQ9 CARHSP1-216ENST00000610831 2841 ntAPPRIS P1 TSL 2 BASIC14.87□□□□□ -0.037e-12■□□□□ 10.5
DDX55Q8NHQ9 POLR2H-210ENST00000476003 648 ntTSL 214.24□□□□□ -0.137e-12■□□□□ 10.5
DDX55Q8NHQ9 CARHSP1-217ENST00000611932 2833 ntAPPRIS P1 TSL 3 BASIC14.23□□□□□ -0.137e-12■□□□□ 10.5
DDX55Q8NHQ9 CARHSP1-218ENST00000614449 2931 ntAPPRIS P1 TSL 5 BASIC13.84□□□□□ -0.197e-12■□□□□ 10.5
DDX55Q8NHQ9 CARHSP1-202ENST00000396593 3026 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.247e-12■□□□□ 10.5
DDX55Q8NHQ9 CDIP1-206ENST00000563507 1463 ntTSL 2 BASIC19.41■□□□□ 0.74e-6■□□□□ 10.5
DDX55Q8NHQ9 TINAGL1-201ENST00000271064 2187 ntAPPRIS P3 TSL 1 (best) BASIC21.16■□□□□ 0.984e-7■□□□□ 10.5
DDX55Q8NHQ9 TINAGL1-202ENST00000457433 2140 ntAPPRIS ALT2 TSL 2 BASIC20.74■□□□□ 0.914e-7■□□□□ 10.5
DDX55Q8NHQ9 TINAGL1-209ENST00000481165 4759 ntTSL 217.39■□□□□ 0.374e-7■□□□□ 10.5
DDX55Q8NHQ9 HPCAL1-203ENST00000419810 4781 ntTSL 1 (best)14.8□□□□□ -0.042e-12■□□□□ 10.5
DDX55Q8NHQ9 HPCAL1-204ENST00000422133 587 ntTSL 312.14□□□□□ -0.471e-7■□□□□ 10.5
DDX55Q8NHQ9 SRSF3-207ENST00000620389 2655 ntTSL 29.2□□□□□ -0.943e-18■□□□□ 10.5
DDX55Q8NHQ9 SRSF3-205ENST00000614136 2376 nt5.78□□□□□ -1.483e-18■□□□□ 10.5
DDX55Q8NHQ9 TMEM132A-210ENST00000540112 2013 ntTSL 223.72■■□□□ 1.394e-6■□□□□ 10.5
DDX55Q8NHQ9 TMEM132A-202ENST00000453848 3346 ntAPPRIS ALT2 TSL 1 (best) BASIC20.46■□□□□ 0.874e-6■□□□□ 10.5
DDX55Q8NHQ9 TMEM132A-201ENST00000005286 3480 ntAPPRIS P3 TSL 5 BASIC18.57■□□□□ 0.564e-6■□□□□ 10.5
DDX55Q8NHQ9 TMEM132A-204ENST00000535480 692 ntTSL 318.34■□□□□ 0.534e-6■□□□□ 10.5
DDX55Q8NHQ9 LRRC61-202ENST00000359623 1877 ntAPPRIS P1 TSL 2 BASIC30.61■■■□□ 2.493e-21■□□□□ 10.5
DDX55Q8NHQ9 LRRC61-201ENST00000323078 1684 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.073e-21■□□□□ 10.5
DDX55Q8NHQ9 SDF4-202ENST00000360001 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC26.57■■□□□ 1.841e-7■□□□□ 10.5
DDX55Q8NHQ9 SDF4-201ENST00000263741 2079 ntAPPRIS P3 TSL 1 (best) BASIC21.93■■□□□ 1.11e-7■□□□□ 10.5
DDX55Q8NHQ9 SDF4-205ENST00000465727 2095 ntTSL 220.72■□□□□ 0.911e-7■□□□□ 10.5
DDX55Q8NHQ9 RPS6-203ENST00000380384 1355 ntTSL 1 (best) BASIC26■■□□□ 1.752e-21■□□□□ 10.5
DDX55Q8NHQ9 RPS6-201ENST00000315377 863 ntTSL 3 BASIC15.28■□□□□ 0.042e-21■□□□□ 10.5
DDX55Q8NHQ9 COX4I1-203ENST00000562336 873 ntAPPRIS P1 TSL 5 BASIC33.05■■■□□ 2.887e-14■□□□□ 10.5
DDX55Q8NHQ9 COX4I1-216ENST00000568794 794 ntTSL 5 BASIC26.12■■□□□ 1.777e-14■□□□□ 10.5
DDX55Q8NHQ9 COX4I1-205ENST00000563774 566 ntTSL 424.43■■□□□ 1.57e-14■□□□□ 10.5
DDX55Q8NHQ9 COX4I1-202ENST00000561569 716 ntAPPRIS P1 TSL 2 BASIC24.33■■□□□ 1.497e-14■□□□□ 10.5
DDX55Q8NHQ9 COX4I1-214ENST00000567266 546 ntTSL 424.33■■□□□ 1.497e-14■□□□□ 10.5
DDX55Q8NHQ9 COX4I1-213ENST00000567241 561 ntTSL 422.29■■□□□ 1.167e-14■□□□□ 10.5
DDX55Q8NHQ9 COX4I1-215ENST00000568339 2271 ntTSL 218.57■□□□□ 0.567e-14■□□□□ 10.5
DDX55Q8NHQ9 COX4I1-210ENST00000566115 471 ntTSL 318.26■□□□□ 0.517e-14■□□□□ 10.5
DDX55Q8NHQ9 COX4I1-201ENST00000253452 708 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.477e-14■□□□□ 10.5
DDX55Q8NHQ9 COX4I1-209ENST00000565078 566 ntTSL 417.61■□□□□ 0.417e-14■□□□□ 10.5
DDX55Q8NHQ9 COX4I1-206ENST00000564544 617 ntTSL 317.12■□□□□ 0.337e-14■□□□□ 10.5
DDX55Q8NHQ9 COX4I1-218ENST00000570123 551 ntTSL 516.53■□□□□ 0.247e-14■□□□□ 10.5
DDX55Q8NHQ9 COX4I1-211ENST00000566405 490 ntTSL 513.94□□□□□ -0.187e-14■□□□□ 10.5
DDX55Q8NHQ9 AGAP3-202ENST00000397238 3225 ntAPPRIS P2 TSL 1 (best) BASIC20.57■□□□□ 0.881e-6■□□□□ 10.4
DDX55Q8NHQ9 AGAP3-203ENST00000461065 1707 ntTSL 1 (best)17.97■□□□□ 0.471e-6■□□□□ 10.4
DDX55Q8NHQ9 EID1-202ENST00000560490 584 ntTSL 3 BASIC17.85■□□□□ 0.451e-6■□□□□ 10.4
DDX55Q8NHQ9 EID1-201ENST00000530028 2298 ntAPPRIS P1 BASIC16.81■□□□□ 0.281e-6■□□□□ 10.4
DDX55Q8NHQ9 AGAP3-226ENST00000622464 3121 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.141e-6■□□□□ 10.4
DDX55Q8NHQ9 AGAP3-205ENST00000463381 2730 ntTSL 2 BASIC13.34□□□□□ -0.271e-6■□□□□ 10.4
DDX55Q8NHQ9 AGAP3-212ENST00000473633 3751 ntTSL 1 (best)10.18□□□□□ -0.781e-6■□□□□ 10.4
DDX55Q8NHQ9 METTL26-206ENST00000448973 1710 ntTSL 1 (best)27.72■■■□□ 2.037e-14■□□□□ 10.4
DDX55Q8NHQ9 METTL26-203ENST00000397664 604 ntTSL 2 BASIC25.89■■□□□ 1.747e-14■□□□□ 10.4
DDX55Q8NHQ9 METTL26-211ENST00000568077 588 ntTSL 323.04■■□□□ 1.287e-14■□□□□ 10.4
DDX55Q8NHQ9 METTL26-201ENST00000301686 794 ntAPPRIS P1 TSL 2 BASIC20.82■□□□□ 0.927e-14■□□□□ 10.4
DDX55Q8NHQ9 METTL26-205ENST00000397666 726 ntTSL 2 BASIC20.82■□□□□ 0.927e-14■□□□□ 10.4
DDX55Q8NHQ9 METTL26-202ENST00000338401 544 ntTSL 1 (best) BASIC20.17■□□□□ 0.827e-14■□□□□ 10.4
DDX55Q8NHQ9 METTL26-204ENST00000397665 558 ntTSL 2 BASIC20.01■□□□□ 0.797e-14■□□□□ 10.4
DDX55Q8NHQ9 METTL26-214ENST00000614890 801 ntTSL 3 BASIC18.59■□□□□ 0.577e-14■□□□□ 10.4
DDX55Q8NHQ9 FBLN1-202ENST00000327858 2896 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.268e-10■□□□□ 10.4
DDX55Q8NHQ9 SREBF2-209ENST00000612482 5365 ntTSL 5 BASIC21.15■□□□□ 0.987e-20■□□□□ 10.4
DDX55Q8NHQ9 SREBF2-201ENST00000361204 5240 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.767e-20■□□□□ 10.4
DDX55Q8NHQ9 SREBF2-202ENST00000424354 5699 ntTSL 1 (best)15.41■□□□□ 0.067e-20■□□□□ 10.4
DDX55Q8NHQ9 SREBF2-208ENST00000491541 4043 ntTSL 1 (best)10.71□□□□□ -0.697e-20■□□□□ 10.4
DDX55Q8NHQ9 CHST13-201ENST00000319340 1789 ntAPPRIS P1 TSL 1 (best) BASIC27.3■■□□□ 1.966e-7■□□□□ 10.4
DDX55Q8NHQ9 COX4I1-212ENST00000566617 572 ntTSL 434.33■■■■□ 3.096e-18■□□□□ 10.4
DDX55Q8NHQ9 COX4I1-208ENST00000564903 1481 ntTSL 2 BASIC16.67■□□□□ 0.266e-18■□□□□ 10.4
DDX55Q8NHQ9 COX4I1-207ENST00000564648 1235 ntTSL 510.08□□□□□ -0.86e-18■□□□□ 10.4
DDX55Q8NHQ9 CAPNS1-209ENST00000590049 592 ntAPPRIS ALT2 TSL 514.76□□□□□ -0.054e-7■□□□□ 10.4
DDX55Q8NHQ9 CAPNS1-210ENST00000590211 403 ntTSL 54.83□□□□□ -1.644e-7■□□□□ 10.4
DDX55Q8NHQ9 DOK4-201ENST00000340099 2772 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.444e-8■□□□□ 10.4
DDX55Q8NHQ9 DOK4-210ENST00000566936 2851 ntTSL 3 BASIC13.42□□□□□ -0.264e-8■□□□□ 10.4
DDX55Q8NHQ9 BEX4-201ENST00000372691 1066 ntAPPRIS P1 TSL 2 BASIC21.76■■□□□ 1.079e-7■□□□□ 10.4
DDX55Q8NHQ9 BEX4-202ENST00000372695 1328 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.619e-7■□□□□ 10.4
DDX55Q8NHQ9 ITIH3-201ENST00000416872 2220 ntTSL 2 BASIC11.89□□□□□ -0.512e-14■□□□□ 10.4
DDX55Q8NHQ9 ITIH3-202ENST00000449956 3007 ntAPPRIS P1 TSL 1 (best) BASIC9.58□□□□□ -0.882e-14■□□□□ 10.4
DDX55Q8NHQ9 ITIH3-211ENST00000621946 3038 ntTSL 1 (best) BASIC9.31□□□□□ -0.922e-14■□□□□ 10.4
DDX55Q8NHQ9 GATA1-202ENST00000376670 1497 ntAPPRIS P1 TSL 1 (best) BASIC25.95■■□□□ 1.746e-15■□□□□ 10.4
DDX55Q8NHQ9 GATA1-201ENST00000376665 1140 ntTSL 5 BASIC14.52□□□□□ -0.096e-15■□□□□ 10.4
DDX55Q8NHQ9 LRRC75A-AS1-230ENST00000584926 604 ntTSL 59.64□□□□□ -0.872e-70■□□□□ 10.4
DDX55Q8NHQ9 MSN-201ENST00000360270 3944 ntAPPRIS P1 TSL 1 (best) BASIC8.78□□□□□ -13e-12■□□□□ 10.4
DDX55Q8NHQ9 STRN4-202ENST00000391910 3628 ntAPPRIS ALT1 TSL 5 BASIC20.33■□□□□ 0.852e-6■□□□□ 10.4
DDX55Q8NHQ9 STRN4-208ENST00000594581 2692 ntTSL 218.3■□□□□ 0.522e-6■□□□□ 10.4
DDX55Q8NHQ9 STRN4-201ENST00000263280 3210 ntAPPRIS P3 TSL 1 (best) BASIC18.09■□□□□ 0.492e-6■□□□□ 10.4
DDX55Q8NHQ9 PTMA-206ENST00000412128 863 ntTSL 330.39■■■□□ 2.461e-12■□□□□ 10.4
DDX55Q8NHQ9 ACTR3-201ENST00000263238 6718 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.071e-12■□□□□ 10.4
DDX55Q8NHQ9 PTMA-204ENST00000409683 933 ntAPPRIS ALT1 TSL 3 BASIC12.54□□□□□ -0.41e-12■□□□□ 10.4
DDX55Q8NHQ9 ACTR3-205ENST00000478928 5965 ntTSL 23.2□□□□□ -1.91e-12■□□□□ 10.4
DDX55Q8NHQ9 LRRC75A-AS1-204ENST00000475947 598 ntTSL 212.47□□□□□ -0.411e-70■□□□□ 10.4
DDX55Q8NHQ9 PAICS-204ENST00000505164 1514 ntTSL 217.98■□□□□ 0.471e-6■□□□□ 10.4
Retrieved 100 of 15,504 protein–RNA pairs in 76.5 ms