RNA–Protein interactions for RNA: ENST00000567241.5

COX4I1-213, Transcript of cytochrome c oxidase subunit 4I1, human

TSL 4

Gene COX4I1, Length 561 nt, Biotype retained intron, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
COX4I1-213	ENST00000567241	NISCH	Q9Y2I1	1504 aa		44.7	■■■■■ 4.75
COX4I1-213	ENST00000567241	CCDC180	Q9P1Z9	1646 aa		39.72	■■■■□ 3.95
COX4I1-213	ENST00000567241	ABCC9	O60706	1549 aa		38.75	■■■■□ 3.79
COX4I1-213	ENST00000567241	RB1CC1	Q8TDY2	1594 aa		37.3	■■■■□ 3.56
COX4I1-213	ENST00000567241	ZCCHC6	Q5VYS8	1495 aa	Known RBP	37.29	■■■■□ 3.56
COX4I1-213	ENST00000567241	DCAF8L2	P0C7V8	631 aa		37.29	■■■■□ 3.56
COX4I1-213	ENST00000567241	NACAD	O15069	1562 aa		37.27	■■■■□ 3.56
COX4I1-213	ENST00000567241	MYO15B	Q96JP2	1530 aa		37.04	■■■■□ 3.52
COX4I1-213	ENST00000567241	DCAF1	Q9Y4B6	1507 aa		36.95	■■■■□ 3.51
COX4I1-213	ENST00000567241	UNC13A	Q9UPW8	1703 aa		36.52	■■■■□ 3.44
COX4I1-213	ENST00000567241	SCRIB	Q14160	1630 aa		36.31	■■■■□ 3.4
COX4I1-213	ENST00000567241	PABPN1	Q86U42	306 aa	Known RBP eCLIP	36.2	■■■■□ 3.39
COX4I1-213	ENST00000567241	BICRA	Q9NZM4	1560 aa		36.19	■■■■□ 3.38
COX4I1-213	ENST00000567241	SHROOM4	Q9ULL8	1493 aa		35.76	■■■■□ 3.32
COX4I1-213	ENST00000567241	DNAJC5B	Q9UF47	199 aa		35.38	■■■■□ 3.25
COX4I1-213	ENST00000567241	EIF4G1	Q04637	1599 aa	Known RBP	35.21	■■■■□ 3.23
COX4I1-213	ENST00000567241	CC2D2A	Q9P2K1	1620 aa		35.06	■■■■□ 3.2
COX4I1-213	ENST00000567241	CECR2	Q9BXF3	1484 aa		34.84	■■■■□ 3.17
COX4I1-213	ENST00000567241	SMARCA4	P51532	1647 aa		34.7	■■■■□ 3.15
COX4I1-213	ENST00000567241	BAZ1A	Q9NRL2	1556 aa	Predicted RBP	34.65	■■■■□ 3.14
COX4I1-213	ENST00000567241	MROH2B	Q7Z745	1585 aa		34.49	■■■■□ 3.11
COX4I1-213	ENST00000567241	ATAD2B	Q9ULI0	1458 aa		34.44	■■■■□ 3.1
COX4I1-213	ENST00000567241	SMARCA2	P51531	1590 aa		34.41	■■■■□ 3.1
COX4I1-213	ENST00000567241	NCAPD3	P42695	1498 aa		34.35	■■■■□ 3.09
COX4I1-213	ENST00000567241	PEG3	Q9GZU2	1588 aa		34.31	■■■■□ 3.08
COX4I1-213	ENST00000567241	HMGXB3	Q12766	1538 aa		34.25	■■■■□ 3.07
COX4I1-213	ENST00000567241	BAZ1B	Q9UIG0	1483 aa	Known RBP	34.19	■■■■□ 3.06
COX4I1-213	ENST00000567241	WIZ	O95785	1651 aa		34.14	■■■■□ 3.06
COX4I1-213	ENST00000567241	RSF1	Q96T23	1441 aa	Predicted RBP	34.1	■■■■□ 3.05
COX4I1-213	ENST00000567241	TOP2A	P11388	1531 aa	Known RBP	33.77	■■■■□ 3
COX4I1-213	ENST00000567241	NES	P48681	1621 aa		33.57	■■■□□ 2.97
COX4I1-213	ENST00000567241	LAMC3	Q9Y6N6	1575 aa		33.47	■■■□□ 2.95
COX4I1-213	ENST00000567241	ERCC6	Q03468	1493 aa		33.39	■■■□□ 2.94
COX4I1-213	ENST00000567241	CADPS	Q9ULU8	1353 aa		33.37	■■■□□ 2.93
COX4I1-213	ENST00000567241	SUPT5H	O00267	1087 aa	Known RBP	33.36	■■■□□ 2.93
COX4I1-213	ENST00000567241	CCDC88B	A6NC98	1476 aa		33.34	■■■□□ 2.93
COX4I1-213	ENST00000567241	CFTR	P13569	1480 aa		33.22	■■■□□ 2.91
COX4I1-213	ENST00000567241	KIF21A	Q7Z4S6	1674 aa		33.22	■■■□□ 2.91
COX4I1-213	ENST00000567241	PDS5B	Q9NTI5	1447 aa		33.21	■■■□□ 2.91
COX4I1-213	ENST00000567241	PRDM2	Q13029	1718 aa		33.06	■■■□□ 2.88
COX4I1-213	ENST00000567241	THOC2	Q8NI27	1593 aa	Known RBP	33.06	■■■□□ 2.88
COX4I1-213	ENST00000567241	FANCD2	Q9BXW9	1451 aa		33.04	■■■□□ 2.88
COX4I1-213	ENST00000567241	CEP164	Q9UPV0	1460 aa		32.99	■■■□□ 2.87
COX4I1-213	ENST00000567241	CUX2	O14529	1486 aa		32.94	■■■□□ 2.86
COX4I1-213	ENST00000567241	MRC2	Q9UBG0	1479 aa		32.92	■■■□□ 2.86
COX4I1-213	ENST00000567241	WDR62	O43379	1518 aa		32.81	■■■□□ 2.84
COX4I1-213	ENST00000567241	URB2	Q14146	1524 aa	Known RBP	32.72	■■■□□ 2.83
COX4I1-213	ENST00000567241	TOPBP1	Q92547	1522 aa		32.53	■■■□□ 2.8
COX4I1-213	ENST00000567241	DNMBP	Q6XZF7	1577 aa		32.51	■■■□□ 2.79
COX4I1-213	ENST00000567241	ABCC8	Q09428	1581 aa		32.46	■■■□□ 2.79
COX4I1-213	ENST00000567241	CUX1	P39880	1505 aa		32.36	■■■□□ 2.77
COX4I1-213	ENST00000567241	POLA1	P09884	1462 aa	Predicted RBP	32.27	■■■□□ 2.76
COX4I1-213	ENST00000567241	IFT140	Q96RY7	1462 aa		32.27	■■■□□ 2.76
COX4I1-213	ENST00000567241	FGD5	Q6ZNL6	1462 aa		32.22	■■■□□ 2.75
COX4I1-213	ENST00000567241	TARBP1	Q13395	1621 aa	Known RBP	32.17	■■■□□ 2.74
COX4I1-213	ENST00000567241	WRN	Q14191	1432 aa	Predicted RBP eCLIP	32.16	■■■□□ 2.74	1e-6	■□□□□ 10.2
COX4I1-213	ENST00000567241	ZNF608	Q9ULD9	1512 aa	Predicted RBP	32.15	■■■□□ 2.74
COX4I1-213	ENST00000567241	SYNJ1	O43426	1573 aa		32.13	■■■□□ 2.73
COX4I1-213	ENST00000567241	RAD54L2	Q9Y4B4	1467 aa		32.13	■■■□□ 2.73
COX4I1-213	ENST00000567241	BIVM-ERCC5	R4GMW8	1640 aa		32.11	■■■□□ 2.73
COX4I1-213	ENST00000567241	SOGA1	O94964	1423 aa		32.09	■■■□□ 2.73
COX4I1-213	ENST00000567241	TOP2B	Q02880	1626 aa		32.09	■■■□□ 2.73
COX4I1-213	ENST00000567241	EIF4G3	O43432	1585 aa	Known RBP	32.07	■■■□□ 2.72
COX4I1-213	ENST00000567241	WDR97	A6NE52	1622 aa		31.98	■■■□□ 2.71
COX4I1-213	ENST00000567241	AQR	O60306	1485 aa	Known RBP eCLIP	31.97	■■■□□ 2.71	8e-18	■■■■■ 42.4
COX4I1-213	ENST00000567241	TDRD9	Q8NDG6	1382 aa	Known RBP	31.92	■■■□□ 2.7
COX4I1-213	ENST00000567241	ABCA10	Q8WWZ4	1543 aa		31.88	■■■□□ 2.69
COX4I1-213	ENST00000567241	ABCA5	Q8WWZ7	1642 aa		31.79	■■■□□ 2.68
COX4I1-213	ENST00000567241	GAPVD1	Q14C86	1478 aa		31.75	■■■□□ 2.67
COX4I1-213	ENST00000567241	PBRM1	Q86U86	1689 aa		31.74	■■■□□ 2.67
COX4I1-213	ENST00000567241	GRIN2B	Q13224	1484 aa		31.72	■■■□□ 2.67
COX4I1-213	ENST00000567241	DNAJC5	Q9H3Z4	198 aa		31.72	■■■□□ 2.67
COX4I1-213	ENST00000567241	SNAPC4	Q5SXM2	1469 aa		31.71	■■■□□ 2.67
COX4I1-213	ENST00000567241	CHD1	O14646	1710 aa		31.64	■■■□□ 2.66
COX4I1-213	ENST00000567241	MAGI1	Q96QZ7	1491 aa	Predicted RBP	31.63	■■■□□ 2.65
COX4I1-213	ENST00000567241	FBLN2	P98095	1184 aa		31.55	■■■□□ 2.64
COX4I1-213	ENST00000567241	OSCAR	Q8IYS5	282 aa		31.55	■■■□□ 2.64
COX4I1-213	ENST00000567241	SYNJ2	O15056	1496 aa		31.51	■■■□□ 2.63
COX4I1-213	ENST00000567241	ERICH3	Q5RHP9	1530 aa		31.5	■■■□□ 2.63
COX4I1-213	ENST00000567241	ADAMTS12	P58397	1594 aa		31.49	■■■□□ 2.63
COX4I1-213	ENST00000567241	KIF27	Q86VH2	1401 aa		31.47	■■■□□ 2.63
COX4I1-213	ENST00000567241	TRIM41	Q8WV44	630 aa		31.46	■■■□□ 2.63
COX4I1-213	ENST00000567241	CHMP7	Q8WUX9	453 aa	Predicted RBP	31.45	■■■□□ 2.63
COX4I1-213	ENST00000567241	FHAD1	B1AJZ9	1412 aa		31.37	■■■□□ 2.61
COX4I1-213	ENST00000567241	GRIN2A	Q12879	1464 aa		31.33	■■■□□ 2.61
COX4I1-213	ENST00000567241	IGF1R	P08069	1367 aa		31.29	■■■□□ 2.6
COX4I1-213	ENST00000567241	CUL7	Q14999	1698 aa		31.28	■■■□□ 2.6
COX4I1-213	ENST00000567241	CLASP1	Q7Z460	1538 aa		31.26	■■■□□ 2.59
COX4I1-213	ENST00000567241	RUSC2	Q8N2Y8	1516 aa		31.26	■■■□□ 2.59
COX4I1-213	ENST00000567241	CEP170	Q5SW79	1584 aa		31.21	■■■□□ 2.59
COX4I1-213	ENST00000567241	NUP160	Q12769	1436 aa		31.17	■■■□□ 2.58
COX4I1-213	ENST00000567241	CHIC1	Q5VXU3	224 aa		31.17	■■■□□ 2.58
COX4I1-213	ENST00000567241	RIMBP3C	A6NJZ7	1639 aa		31.13	■■■□□ 2.57
COX4I1-213	ENST00000567241	RIMBP3B	A6NNM3	1639 aa		31.13	■■■□□ 2.57
COX4I1-213	ENST00000567241	RIMBP3	Q9UFD9	1639 aa		31.13	■■■□□ 2.57
COX4I1-213	ENST00000567241	CARMIL1	Q5VZK9	1371 aa		31.13	■■■□□ 2.57
COX4I1-213	ENST00000567241	ARHGEF11	O15085	1522 aa		31.13	■■■□□ 2.57
COX4I1-213	ENST00000567241	RAPGEF2	Q9Y4G8	1499 aa		30.97	■■■□□ 2.55
COX4I1-213	ENST00000567241	SHROOM2	Q13796	1616 aa		30.95	■■■□□ 2.54
COX4I1-213	ENST00000567241	EEA1	Q15075	1411 aa		30.92	■■■□□ 2.54

Retrieved 100 of 20,778 RNA–protein pairs in 7.5 ms