Protein–RNA interactions for Protein: Q8IWP9

CCDC28A, Coiled-coil domain-containing protein 28A, humanhuman

Predictions only

Length 274 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28AQ8IWP9 AGAP1-IT1-201ENST00000440498 664 ntTSL 3 BASIC15.38■□□□□ 0.05
CCDC28AQ8IWP9 PRKCQ-AS1-202ENST00000445427 1133 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
CCDC28AQ8IWP9 ITGA9-AS1-210ENST00000457661 738 ntTSL 4 BASIC15.38■□□□□ 0.05
CCDC28AQ8IWP9 AC105265.2-201ENST00000467189 838 ntBASIC15.38■□□□□ 0.05
CCDC28AQ8IWP9 EPHA10-201ENST00000319637 2050 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
CCDC28AQ8IWP9 SHQ1-201ENST00000325599 2879 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
CCDC28AQ8IWP9 FAM104A-202ENST00000405159 2865 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
CCDC28AQ8IWP9 MFSD1-203ENST00000415822 2423 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
CCDC28AQ8IWP9 SFT2D3-201ENST00000310981 3735 ntAPPRIS P1 BASIC15.38■□□□□ 0.05
CCDC28AQ8IWP9 GLG1-201ENST00000205061 8261 ntAPPRIS P3 TSL 1 (best) BASIC15.38■□□□□ 0.05
CCDC28AQ8IWP9 LMNA-205ENST00000368299 2253 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
CCDC28AQ8IWP9 CHKB-201ENST00000406938 1638 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
CCDC28AQ8IWP9 CRAT-201ENST00000318080 2763 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
CCDC28AQ8IWP9 GLG1-214ENST00000627032 2147 ntTSL 5 BASIC15.38■□□□□ 0.05
CCDC28AQ8IWP9 ADAD1-201ENST00000296513 1961 ntAPPRIS P1 TSL 2 BASIC15.38■□□□□ 0.05
CCDC28AQ8IWP9 THUMPD2-204ENST00000505747 1970 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
CCDC28AQ8IWP9 ATAD3A-207ENST00000536055 2332 ntTSL 2 BASIC15.38■□□□□ 0.05
CCDC28AQ8IWP9 ZNF140-207ENST00000440550 1663 ntTSL 2 BASIC15.38■□□□□ 0.05
CCDC28AQ8IWP9 YTHDF3-215ENST00000621957 2387 ntAPPRIS ALT1 TSL 5 BASIC15.38■□□□□ 0.05
CCDC28AQ8IWP9 DHRS2-201ENST00000250383 1705 ntAPPRIS P3 TSL 1 (best) BASIC15.37■□□□□ 0.05
CCDC28AQ8IWP9 ANO7L1-203ENST00000602586 1720 ntBASIC15.37■□□□□ 0.05
CCDC28AQ8IWP9 JPH2-201ENST00000342272 1923 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
CCDC28AQ8IWP9 SDC4-201ENST00000372733 2613 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
CCDC28AQ8IWP9 INPP5K-204ENST00000421807 2988 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
CCDC28AQ8IWP9 SEMA6C-210ENST00000621728 1918 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
CCDC28AQ8IWP9 ARL6IP6-201ENST00000326446 2805 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
CCDC28AQ8IWP9 AL353997.2-201ENST00000579352 4955 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
CCDC28AQ8IWP9 XKR7-201ENST00000562532 7844 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
CCDC28AQ8IWP9 PFKFB3-217ENST00000626882 1965 ntTSL 5 BASIC15.37■□□□□ 0.05
CCDC28AQ8IWP9 PARP16-201ENST00000261888 2731 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
CCDC28AQ8IWP9 HMGXB3-202ENST00000503427 5275 ntAPPRIS ALT2 TSL 5 BASIC15.37■□□□□ 0.05
CCDC28AQ8IWP9 CDKN2D-201ENST00000335766 1086 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
CCDC28AQ8IWP9 NT5C3AP1-201ENST00000394500 1012 ntBASIC15.37■□□□□ 0.05
CCDC28AQ8IWP9 RHOF-204ENST00000537265 699 ntTSL 2 BASIC15.37■□□□□ 0.05
CCDC28AQ8IWP9 AP2S1-203ENST00000593442 636 ntTSL 2 BASIC15.37■□□□□ 0.05
CCDC28AQ8IWP9 AC010999.2-201ENST00000621974 596 ntTSL 2 BASIC15.37■□□□□ 0.05
CCDC28AQ8IWP9 MAGI1-202ENST00000402939 4389 ntAPPRIS ALT2 TSL 1 (best) BASIC15.37■□□□□ 0.05
CCDC28AQ8IWP9 TOM1-204ENST00000411850 2390 ntAPPRIS ALT1 TSL 1 (best) BASIC15.37■□□□□ 0.05
CCDC28AQ8IWP9 DNM1-216ENST00000634267 2909 ntTSL 5 BASIC15.37■□□□□ 0.05
CCDC28AQ8IWP9 CCDC127-201ENST00000296824 9342 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
CCDC28AQ8IWP9 PEG3-206ENST00000598410 5304 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
CCDC28AQ8IWP9 ASCC2-223ENST00000542393 2594 ntTSL 2 BASIC15.37■□□□□ 0.05
CCDC28AQ8IWP9 MAPK8IP1P2-201ENST00000580257 1472 ntBASIC15.37■□□□□ 0.05
CCDC28AQ8IWP9 APEH-202ENST00000438011 2249 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
CCDC28AQ8IWP9 WBP2-215ENST00000591399 2225 ntAPPRIS P2 TSL 5 BASIC15.37■□□□□ 0.05
CCDC28AQ8IWP9 CDK19-202ENST00000368911 6246 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
CCDC28AQ8IWP9 ZNF180-202ENST00000391956 3049 ntAPPRIS ALT2 TSL 2 BASIC15.37■□□□□ 0.05
CCDC28AQ8IWP9 LINC00921-202ENST00000573951 2468 ntTSL 2 BASIC15.37■□□□□ 0.05
CCDC28AQ8IWP9 WISP2-202ENST00000372865 1518 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
CCDC28AQ8IWP9 PANK4-201ENST00000378466 2677 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
CCDC28AQ8IWP9 SYTL1-201ENST00000318074 1900 ntTSL 2 BASIC15.37■□□□□ 0.05
CCDC28AQ8IWP9 ODC1-202ENST00000405333 1943 ntAPPRIS P1 TSL 2 BASIC15.37■□□□□ 0.05
CCDC28AQ8IWP9 PLCB1-201ENST00000338037 7092 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
CCDC28AQ8IWP9 NDUFA11-205ENST00000592634 2154 ntTSL 2 BASIC15.36■□□□□ 0.05
CCDC28AQ8IWP9 SLC25A22-201ENST00000320230 2796 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
CCDC28AQ8IWP9 TEAD3-201ENST00000338863 2983 ntAPPRIS ALT2 TSL 1 (best) BASIC15.36■□□□□ 0.05
CCDC28AQ8IWP9 STK24-203ENST00000397517 4578 ntTSL 2 BASIC15.36■□□□□ 0.05
CCDC28AQ8IWP9 DENND3-201ENST00000262585 5438 ntAPPRIS P2 TSL 5 BASIC15.36■□□□□ 0.05
CCDC28AQ8IWP9 APTR-204ENST00000440088 2029 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
CCDC28AQ8IWP9 KCNS1-201ENST00000306117 4538 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
CCDC28AQ8IWP9 TRAF4-205ENST00000444415 1456 ntTSL 5 BASIC15.36■□□□□ 0.05
CCDC28AQ8IWP9 C1QL1-201ENST00000253407 1295 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
CCDC28AQ8IWP9 HGS-201ENST00000329138 2970 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
CCDC28AQ8IWP9 MIR638-201ENST00000385237 100 ntBASIC15.36■□□□□ 0.05
CCDC28AQ8IWP9 MTURN-203ENST00000409688 843 ntTSL 2 BASIC15.36■□□□□ 0.05
CCDC28AQ8IWP9 RPL29-209ENST00000495383 713 ntAPPRIS P1 TSL 2 BASIC15.36■□□□□ 0.05
CCDC28AQ8IWP9 STOX2-205ENST00000513034 807 ntTSL 3 BASIC15.36■□□□□ 0.05
CCDC28AQ8IWP9 CDKN2A-210ENST00000530628 748 ntAPPRIS P1 TSL 5 BASIC15.36■□□□□ 0.05
CCDC28AQ8IWP9 AC127029.2-201ENST00000577329 502 ntTSL 3 BASIC15.36■□□□□ 0.05
CCDC28AQ8IWP9 AC008175.2-201ENST00000612840 297 ntBASIC15.36■□□□□ 0.05
CCDC28AQ8IWP9 KCNMA1-201ENST00000286627 6194 ntAPPRIS P3 TSL 1 (best) BASIC15.36■□□□□ 0.05
CCDC28AQ8IWP9 FAM109A-203ENST00000547838 2846 ntAPPRIS P3 TSL 4 BASIC15.36■□□□□ 0.05
CCDC28AQ8IWP9 RUSC1-203ENST00000368349 1968 ntAPPRIS P3 TSL 1 (best) BASIC15.36■□□□□ 0.05
CCDC28AQ8IWP9 FAM76B-201ENST00000358780 3952 ntAPPRIS P3 TSL 1 (best) BASIC15.36■□□□□ 0.05
CCDC28AQ8IWP9 CASK-203ENST00000378163 4411 ntAPPRIS ALT1 TSL 5 BASIC15.36■□□□□ 0.05
CCDC28AQ8IWP9 PVRIG-201ENST00000317271 1583 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
CCDC28AQ8IWP9 EPS15L1-207ENST00000594975 2489 ntTSL 2 BASIC15.36■□□□□ 0.05
CCDC28AQ8IWP9 PLTP-205ENST00000477313 2255 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
CCDC28AQ8IWP9 AQP3-201ENST00000297991 1849 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
CCDC28AQ8IWP9 UCK2-201ENST00000367879 1375 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
CCDC28AQ8IWP9 SPEG-201ENST00000312358 10782 ntAPPRIS P1 TSL 5 BASIC15.36■□□□□ 0.05
CCDC28AQ8IWP9 LINC00602-201ENST00000629776 2065 ntBASIC15.36■□□□□ 0.05
CCDC28AQ8IWP9 AC132872.4-202ENST00000622924 2756 ntBASIC15.36■□□□□ 0.05
CCDC28AQ8IWP9 MCF2L2-201ENST00000328913 4980 ntAPPRIS P2 TSL 5 BASIC15.35■□□□□ 0.05
CCDC28AQ8IWP9 ST6GALNAC4-201ENST00000335791 1691 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
CCDC28AQ8IWP9 PRAG1-202ENST00000622241 4639 ntAPPRIS P1 TSL 2 BASIC15.35■□□□□ 0.05
CCDC28AQ8IWP9 SPR-201ENST00000234454 1480 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
CCDC28AQ8IWP9 NOXA1-202ENST00000392815 1464 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
CCDC28AQ8IWP9 PML-204ENST00000359928 1726 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
CCDC28AQ8IWP9 PELP1-208ENST00000572293 5272 ntAPPRIS P2 TSL 1 (best) BASIC15.35■□□□□ 0.05
CCDC28AQ8IWP9 EIF2B1-204ENST00000537073 1768 ntTSL 2 BASIC15.35■□□□□ 0.05
CCDC28AQ8IWP9 ACIN1-205ENST00000457657 4815 ntAPPRIS ALT2 TSL 5 BASIC15.35■□□□□ 0.05
CCDC28AQ8IWP9 GCOM1-201ENST00000380568 1516 ntAPPRIS ALT2 TSL 2 BASIC15.35■□□□□ 0.05
CCDC28AQ8IWP9 LTC4S-202ENST00000401985 486 ntTSL 3 BASIC15.35■□□□□ 0.05
CCDC28AQ8IWP9 AC245052.3-201ENST00000450182 901 ntBASIC15.35■□□□□ 0.05
CCDC28AQ8IWP9 PRKCQ-AS1-204ENST00000455810 920 ntTSL 2 BASIC15.35■□□□□ 0.05
CCDC28AQ8IWP9 ARHGAP24-206ENST00000503995 1273 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
CCDC28AQ8IWP9 COG5-203ENST00000393603 5418 ntAPPRIS ALT2 TSL 1 (best) BASIC15.35■□□□□ 0.05
CCDC28AQ8IWP9 VSIG10L-201ENST00000335624 3397 ntAPPRIS P1 TSL 5 BASIC15.35■□□□□ 0.05
CCDC28AQ8IWP9 TBL3-205ENST00000568546 6803 ntAPPRIS P2 TSL 1 (best) BASIC15.35■□□□□ 0.05
Retrieved 100 of 98,524 protein–RNA pairs in 40.5 ms