Protein–RNA interactions for Protein: Q9HC56

PCDH9, Protocadherin-9, humanhuman

Predictions only

Length 1,237 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9Q9HC56 LTB-210ENST00000429299 897 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
PCDH9Q9HC56 NCAM1-AS1-201ENST00000526229 1081 ntTSL 2 BASIC19.03■□□□□ 0.64
PCDH9Q9HC56 YPEL3-207ENST00000566134 761 ntTSL 5 BASIC19.03■□□□□ 0.64
PCDH9Q9HC56 ARHGDIA-207ENST00000580685 1201 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
PCDH9Q9HC56 AL023803.3-201ENST00000615559 522 ntBASIC19.03■□□□□ 0.64
PCDH9Q9HC56 AC073912.3-201ENST00000624414 853 ntBASIC19.03■□□□□ 0.64
PCDH9Q9HC56 SCYL1-202ENST00000279270 1659 ntTSL 5 BASIC19.03■□□□□ 0.64
PCDH9Q9HC56 MAFF-201ENST00000338483 2490 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
PCDH9Q9HC56 HPS3-202ENST00000460120 2745 ntTSL 2 BASIC19.03■□□□□ 0.64
PCDH9Q9HC56 ZDHHC8P1-204ENST00000433168 2309 ntTSL 2 BASIC19.03■□□□□ 0.64
PCDH9Q9HC56 CXorf40A-208ENST00000434353 1524 ntAPPRIS ALT1 TSL 5 BASIC19.03■□□□□ 0.64
PCDH9Q9HC56 EFEMP2-210ENST00000528176 1504 ntTSL 5 BASIC19.03■□□□□ 0.64
PCDH9Q9HC56 GSDMD-201ENST00000262580 1762 ntAPPRIS P2 TSL 1 (best) BASIC19.03■□□□□ 0.64
PCDH9Q9HC56 MST1R-214ENST00000613534 2025 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
PCDH9Q9HC56 COL4A3BP-201ENST00000261415 2262 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
PCDH9Q9HC56 CRMP1-202ENST00000397890 2911 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
PCDH9Q9HC56 CADPS2-202ENST00000334010 6045 ntAPPRIS ALT2 TSL 5 BASIC19.03■□□□□ 0.64
PCDH9Q9HC56 CSK-201ENST00000220003 2767 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
PCDH9Q9HC56 CENPA-202ENST00000335756 1452 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
PCDH9Q9HC56 FBXL3-201ENST00000355619 3503 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
PCDH9Q9HC56 PDLIM3-201ENST00000284767 2589 ntTSL 5 BASIC19.02■□□□□ 0.64
PCDH9Q9HC56 LRRN4CL-201ENST00000317449 2585 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
PCDH9Q9HC56 ADAMTS16-203ENST00000511368 2682 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
PCDH9Q9HC56 ZNF394-201ENST00000337673 2179 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
PCDH9Q9HC56 LINC00535-201ENST00000501400 1914 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
PCDH9Q9HC56 HTATSF1-204ENST00000535601 3019 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
PCDH9Q9HC56 XKR6-203ENST00000416569 3382 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
PCDH9Q9HC56 PIGV-201ENST00000078527 2367 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
PCDH9Q9HC56 KRT17P2-202ENST00000326333 1174 ntTSL 2 BASIC19.02■□□□□ 0.64
PCDH9Q9HC56 TMEM240-201ENST00000378733 718 ntAPPRIS P1 TSL 2 BASIC19.02■□□□□ 0.64
PCDH9Q9HC56 MIR564-202ENST00000385049 94 ntBASIC19.02■□□□□ 0.64
PCDH9Q9HC56 AL954642.1-201ENST00000428088 538 ntTSL 3 BASIC19.02■□□□□ 0.64
PCDH9Q9HC56 FBXO32-202ENST00000443022 1227 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
PCDH9Q9HC56 TSPY17P-201ENST00000450329 467 ntBASIC19.02■□□□□ 0.64
PCDH9Q9HC56 ADCYAP1-202ENST00000450565 918 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
PCDH9Q9HC56 EGLN1P1-201ENST00000531623 762 ntBASIC19.02■□□□□ 0.64
PCDH9Q9HC56 PSMD9-208ENST00000542602 516 ntTSL 3 BASIC19.02■□□□□ 0.64
PCDH9Q9HC56 SLC39A2-203ENST00000554422 1259 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
PCDH9Q9HC56 CCDC28A-203ENST00000617445 1240 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
PCDH9Q9HC56 AC116562.4-202ENST00000641738 218 ntBASIC19.02■□□□□ 0.64
PCDH9Q9HC56 ADAM33-203ENST00000379861 3674 ntAPPRIS ALT2 TSL 1 (best) BASIC19.02■□□□□ 0.64
PCDH9Q9HC56 AVL9-209ENST00000640103 1367 ntTSL 5 BASIC19.02■□□□□ 0.64
PCDH9Q9HC56 LINC00574-201ENST00000420557 2318 ntTSL 2 BASIC19.02■□□□□ 0.64
PCDH9Q9HC56 DPAGT1-203ENST00000409993 3274 ntAPPRIS P1 TSL 2 BASIC19.02■□□□□ 0.64
PCDH9Q9HC56 SIM2-201ENST00000290399 4442 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
PCDH9Q9HC56 TMPRSS12-201ENST00000398458 1450 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
PCDH9Q9HC56 PCBP3-205ENST00000400310 2168 ntTSL 2 BASIC19.02■□□□□ 0.63
PCDH9Q9HC56 KLF6-204ENST00000469435 2169 ntTSL 1 (best) BASIC19.02■□□□□ 0.63
PCDH9Q9HC56 KMT5B-206ENST00000405515 2869 ntTSL 5 BASIC19.02■□□□□ 0.63
PCDH9Q9HC56 UBQLN4-201ENST00000368309 3576 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
PCDH9Q9HC56 IL17RC-201ENST00000295981 2621 ntAPPRIS P4 TSL 2 BASIC19.02■□□□□ 0.63
PCDH9Q9HC56 SDC2-202ENST00000518385 1583 ntTSL 5 BASIC19.02■□□□□ 0.63
PCDH9Q9HC56 TNFAIP1-202ENST00000544907 1656 ntTSL 2 BASIC19.01■□□□□ 0.63
PCDH9Q9HC56 LMNA-207ENST00000368301 2461 ntTSL 2 BASIC19.01■□□□□ 0.63
PCDH9Q9HC56 CORO6-212ENST00000584969 1416 ntAPPRIS ALT1 TSL 5 BASIC19.01■□□□□ 0.63
PCDH9Q9HC56 SLC12A4-201ENST00000316341 4765 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
PCDH9Q9HC56 AEBP2-201ENST00000266508 3620 ntAPPRIS ALT2 TSL 1 (best) BASIC19.01■□□□□ 0.63
PCDH9Q9HC56 PTP4A3-202ENST00000349124 2710 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
PCDH9Q9HC56 MZT1-201ENST00000377818 2299 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
PCDH9Q9HC56 WNT1-201ENST00000293549 1185 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
PCDH9Q9HC56 UXT-201ENST00000333119 574 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
PCDH9Q9HC56 TRAPPC3-204ENST00000373166 1265 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
PCDH9Q9HC56 AL023284.2-201ENST00000405850 579 ntBASIC19.01■□□□□ 0.63
PCDH9Q9HC56 SHBG-203ENST00000416273 1042 ntAPPRIS ALT2 TSL 3 BASIC19.01■□□□□ 0.63
PCDH9Q9HC56 SLC25A6P5-201ENST00000435663 894 ntBASIC19.01■□□□□ 0.63
PCDH9Q9HC56 MNX1-AS1-201ENST00000480284 1041 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
PCDH9Q9HC56 AL353719.1-201ENST00000566847 864 ntBASIC19.01■□□□□ 0.63
PCDH9Q9HC56 SHBG-215ENST00000575903 1196 ntTSL 3 BASIC19.01■□□□□ 0.63
PCDH9Q9HC56 AC138028.4-201ENST00000564984 1845 ntBASIC19.01■□□□□ 0.63
PCDH9Q9HC56 CTNNBL1-201ENST00000361383 1925 ntAPPRIS P2 TSL 1 (best) BASIC19.01■□□□□ 0.63
PCDH9Q9HC56 MAPKAP1-205ENST00000373503 3045 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
PCDH9Q9HC56 TRAF3-203ENST00000392745 2459 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
PCDH9Q9HC56 NUDT17-201ENST00000334513 1473 ntAPPRIS P1 TSL 5 BASIC19.01■□□□□ 0.63
PCDH9Q9HC56 HNRNPUL1-203ENST00000378215 2864 ntTSL 2 BASIC19.01■□□□□ 0.63
PCDH9Q9HC56 TAP1-201ENST00000354258 2959 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
PCDH9Q9HC56 AC090206.1-201ENST00000615734 1678 ntTSL 5 BASIC19.01■□□□□ 0.63
PCDH9Q9HC56 FNBP1-201ENST00000355681 1977 ntTSL 2 BASIC19.01■□□□□ 0.63
PCDH9Q9HC56 FERMT2-204ENST00000399304 2082 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
PCDH9Q9HC56 SMPD3-211ENST00000568373 2073 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
PCDH9Q9HC56 TNFAIP2-201ENST00000333007 4175 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
PCDH9Q9HC56 PHC1-212ENST00000543824 4292 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
PCDH9Q9HC56 RPL32-202ENST00000396953 1734 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
PCDH9Q9HC56 GPS1-201ENST00000306823 1842 ntAPPRIS P3 TSL 1 (best) BASIC19■□□□□ 0.63
PCDH9Q9HC56 ALDH4A1-201ENST00000290597 2124 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
PCDH9Q9HC56 SLC22A4-201ENST00000200652 2201 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
PCDH9Q9HC56 PRSS35-201ENST00000369700 2440 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
PCDH9Q9HC56 ULK3-220ENST00000569437 2611 ntAPPRIS ALT1 TSL 1 (best) BASIC19■□□□□ 0.63
PCDH9Q9HC56 AC118553.2-202ENST00000638792 2729 ntAPPRIS ALT2 TSL 5 BASIC19■□□□□ 0.63
PCDH9Q9HC56 SNCG-201ENST00000348795 684 ntTSL 2 BASIC19■□□□□ 0.63
PCDH9Q9HC56 AL445685.1-201ENST00000425802 762 ntTSL 3 BASIC19■□□□□ 0.63
PCDH9Q9HC56 MCCD1P1-208ENST00000445732 328 ntBASIC19■□□□□ 0.63
PCDH9Q9HC56 RPS20-210ENST00000523936 899 ntTSL 2 BASIC19■□□□□ 0.63
PCDH9Q9HC56 SDR39U1-202ENST00000538105 1041 ntTSL 2 BASIC19■□□□□ 0.63
PCDH9Q9HC56 HRASLS5-205ENST00000539221 1167 ntTSL 1 (best) BASIC19■□□□□ 0.63
PCDH9Q9HC56 SIGLEC15-202ENST00000546268 1054 ntTSL 2 BASIC19■□□□□ 0.63
PCDH9Q9HC56 CDKN2A-213ENST00000579122 666 ntTSL 3 BASIC19■□□□□ 0.63
PCDH9Q9HC56 PRR29-205ENST00000579184 1052 ntAPPRIS ALT2 TSL 2 BASIC19■□□□□ 0.63
PCDH9Q9HC56 EVX2-201ENST00000308618 4203 ntAPPRIS P1 TSL 5 BASIC19■□□□□ 0.63
PCDH9Q9HC56 OLFM2-203ENST00000590841 1665 ntTSL 2 BASIC19■□□□□ 0.63
PCDH9Q9HC56 EIPR1-201ENST00000382125 1766 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 22.3 ms