RNA–Protein interactions for RNA: ENST00000392745.6

TRAF3-203, Transcript of TNF receptor associated factor 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRAF3, Length 2,459 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAF3-203ENST00000392745 NISCHQ9Y2I1 1504 aa39.98■■■■□ 3.99
TRAF3-203ENST00000392745 CCDC180Q9P1Z9 1646 aa34.57■■■■□ 3.12
TRAF3-203ENST00000392745 ZCCHC6Q5VYS8 1495 aaKnown RBP33.63■■■□□ 2.97
TRAF3-203ENST00000392745 DCAF8L2P0C7V8 631 aa33.13■■■□□ 2.89
TRAF3-203ENST00000392745 SHROOM4Q9ULL8 1493 aa33.09■■■□□ 2.89
TRAF3-203ENST00000392745 DCAF1Q9Y4B6 1507 aa32.94■■■□□ 2.86
TRAF3-203ENST00000392745 ABCC9O60706 1549 aa32.6■■■□□ 2.81
TRAF3-203ENST00000392745 MYO15BQ96JP2 1530 aa32.39■■■□□ 2.78
TRAF3-203ENST00000392745 NACADO15069 1562 aa32.15■■■□□ 2.74
TRAF3-203ENST00000392745 SCRIBQ14160 1630 aa32.02■■■□□ 2.72
TRAF3-203ENST00000392745 SUPT5HO00267 1087 aaKnown RBP32.01■■■□□ 2.71
TRAF3-203ENST00000392745 RB1CC1Q8TDY2 1594 aa31.8■■■□□ 2.68
TRAF3-203ENST00000392745 UNC13AQ9UPW8 1703 aa31.31■■■□□ 2.6
TRAF3-203ENST00000392745 RSF1Q96T23 1441 aaPredicted RBP31.21■■■□□ 2.59
TRAF3-203ENST00000392745 CECR2Q9BXF3 1484 aa31.16■■■□□ 2.58
TRAF3-203ENST00000392745 MROH2BQ7Z745 1585 aa30.98■■■□□ 2.55
TRAF3-203ENST00000392745 BICRAQ9NZM4 1560 aa30.95■■■□□ 2.54
TRAF3-203ENST00000392745 PABPN1Q86U42 306 aaKnown RBP eCLIP30.91■■■□□ 2.54
TRAF3-203ENST00000392745 BAZ1AQ9NRL2 1556 aaPredicted RBP30.79■■■□□ 2.52
TRAF3-203ENST00000392745 CHIC1Q5VXU3 224 aa30.78■■■□□ 2.52
TRAF3-203ENST00000392745 WIZO95785 1651 aa30.76■■■□□ 2.51
TRAF3-203ENST00000392745 SMARCA4P51532 1647 aa30.65■■■□□ 2.5
TRAF3-203ENST00000392745 TOP2AP11388 1531 aaKnown RBP30.33■■■□□ 2.45
TRAF3-203ENST00000392745 HRCP23327 699 aa30.32■■■□□ 2.44
TRAF3-203ENST00000392745 PEG3Q9GZU2 1588 aa30.2■■■□□ 2.43
TRAF3-203ENST00000392745 CCDC88BA6NC98 1476 aa30.12■■■□□ 2.41
TRAF3-203ENST00000392745 SMARCA2P51531 1590 aa30.11■■■□□ 2.41
TRAF3-203ENST00000392745 ATAD2BQ9ULI0 1458 aa30.09■■■□□ 2.41
TRAF3-203ENST00000392745 EIF4G1Q04637 1599 aaKnown RBP29.98■■■□□ 2.39
TRAF3-203ENST00000392745 TRIM41Q8WV44 630 aa29.98■■■□□ 2.39
TRAF3-203ENST00000392745 PCGF6Q9BYE7 350 aa29.98■■■□□ 2.39
TRAF3-203ENST00000392745 BAZ1BQ9UIG0 1483 aaKnown RBP29.91■■■□□ 2.38
TRAF3-203ENST00000392745 PPARGC1BQ86YN6 1023 aaKnown RBP29.74■■■□□ 2.35
TRAF3-203ENST00000392745 LOC105371045A0A1W2PR82 267 aa29.73■■■□□ 2.35
TRAF3-203ENST00000392745 NCAPD3P42695 1498 aa29.73■■■□□ 2.35
TRAF3-203ENST00000392745 ABCC8Q09428 1581 aa29.65■■■□□ 2.34
TRAF3-203ENST00000392745 HMGXB3Q12766 1538 aa29.65■■■□□ 2.34
TRAF3-203ENST00000392745 FAM9AQ8IZU1 332 aaPredicted RBP29.56■■■□□ 2.32
TRAF3-203ENST00000392745 CC2D2AQ9P2K1 1620 aa29.45■■■□□ 2.31
TRAF3-203ENST00000392745 WRNQ14191 1432 aaPredicted RBP eCLIP29.33■■■□□ 2.29
TRAF3-203ENST00000392745 SYNJ1O43426 1573 aa29.23■■■□□ 2.27
TRAF3-203ENST00000392745 EHMT2Q96KQ7 1210 aa29.22■■■□□ 2.27
TRAF3-203ENST00000392745 SOGA1O94964 1423 aa29.19■■■□□ 2.26
TRAF3-203ENST00000392745 CFTRP13569 1480 aa29.19■■■□□ 2.26
TRAF3-203ENST00000392745 TRIM26Q12899 539 aaPredicted RBP29.16■■■□□ 2.26
TRAF3-203ENST00000392745 RUSC2Q8N2Y8 1516 aa29.1■■■□□ 2.25
TRAF3-203ENST00000392745 CADPSQ9ULU8 1353 aa29.03■■■□□ 2.24
TRAF3-203ENST00000392745 TOP2BQ02880 1626 aa29.02■■■□□ 2.24
TRAF3-203ENST00000392745 EEA1Q15075 1411 aa28.99■■■□□ 2.23
TRAF3-203ENST00000392745 PRDM2Q13029 1718 aa28.99■■■□□ 2.23
TRAF3-203ENST00000392745 CSRNP3Q8WYN3 585 aa28.96■■■□□ 2.23
TRAF3-203ENST00000392745 BIVM-ERCC5R4GMW8 1640 aa28.96■■■□□ 2.23
TRAF3-203ENST00000392745 CUX1P39880 1505 aa28.92■■■□□ 2.22
TRAF3-203ENST00000392745 DNAJC5BQ9UF47 199 aa28.85■■■□□ 2.21
TRAF3-203ENST00000392745 NESP48681 1621 aa28.77■■■□□ 2.2
TRAF3-203ENST00000392745 FANCD2Q9BXW9 1451 aa28.71■■■□□ 2.19
TRAF3-203ENST00000392745 ZEB1P37275 1124 aaPredicted RBP28.7■■■□□ 2.18
TRAF3-203ENST00000392745 TNIKQ9UKE5 1360 aa28.69■■■□□ 2.18
TRAF3-203ENST00000392745 GOLGA3Q08378 1498 aa28.68■■■□□ 2.18
TRAF3-203ENST00000392745 UBTFP17480 764 aaKnown RBP28.66■■■□□ 2.18
TRAF3-203ENST00000392745 KIF21BO75037 1637 aa28.64■■■□□ 2.18
TRAF3-203ENST00000392745 CEP164Q9UPV0 1460 aa28.64■■■□□ 2.17
TRAF3-203ENST00000392745 LAMC3Q9Y6N6 1575 aa28.62■■■□□ 2.17
TRAF3-203ENST00000392745 CEP162Q5TB80 1403 aa28.6■■■□□ 2.17
TRAF3-203ENST00000392745 RAPGEF2Q9Y4G8 1499 aa28.54■■■□□ 2.16
TRAF3-203ENST00000392745 FGD5Q6ZNL6 1462 aa28.53■■■□□ 2.16
TRAF3-203ENST00000392745 KIF27Q86VH2 1401 aa28.53■■■□□ 2.16
TRAF3-203ENST00000392745 DNMBPQ6XZF7 1577 aa28.46■■■□□ 2.15
TRAF3-203ENST00000392745 PRXQ9BXM0 1461 aa28.45■■■□□ 2.15
TRAF3-203ENST00000392745 TOPBP1Q92547 1522 aa28.44■■■□□ 2.14
TRAF3-203ENST00000392745 CUX2O14529 1486 aa28.42■■■□□ 2.14
TRAF3-203ENST00000392745 PDS5BQ9NTI5 1447 aa28.41■■■□□ 2.14
TRAF3-203ENST00000392745 SCAF1Q9H7N4 1312 aaKnown RBP28.38■■■□□ 2.13
TRAF3-203ENST00000392745 ERICH3Q5RHP9 1530 aa28.37■■■□□ 2.13
TRAF3-203ENST00000392745 URB2Q14146 1524 aaKnown RBP28.36■■■□□ 2.13
TRAF3-203ENST00000392745 POLA1P09884 1462 aaPredicted RBP28.35■■■□□ 2.13
TRAF3-203ENST00000392745 KIF21AQ7Z4S6 1674 aa28.34■■■□□ 2.13
TRAF3-203ENST00000392745 RAD54L2Q9Y4B4 1467 aa28.33■■■□□ 2.13
TRAF3-203ENST00000392745 IGF1RP08069 1367 aa28.32■■■□□ 2.12
TRAF3-203ENST00000392745 PELP1Q8IZL8 1130 aaKnown RBP28.31■■■□□ 2.12
TRAF3-203ENST00000392745 CLIP1P30622 1438 aa28.28■■■□□ 2.12
TRAF3-203ENST00000392745 ABCA10Q8WWZ4 1543 aa28.24■■■□□ 2.11
TRAF3-203ENST00000392745 RANGAP1P46060 587 aaPredicted RBP28.22■■■□□ 2.11
TRAF3-203ENST00000392745 CARMIL1Q5VZK9 1371 aa28.16■■■□□ 2.1
TRAF3-203ENST00000392745 WDR97A6NE52 1622 aa28.1■■■□□ 2.09
TRAF3-203ENST00000392745 VPS8Q8N3P4 1428 aa28.06■■■□□ 2.08
TRAF3-203ENST00000392745 TDRD9Q8NDG6 1382 aaKnown RBP28.03■■■□□ 2.08
TRAF3-203ENST00000392745 TTBK1Q5TCY1 1321 aaPredicted RBP28.03■■■□□ 2.08
TRAF3-203ENST00000392745 MRC2Q9UBG0 1479 aa28.02■■■□□ 2.08
TRAF3-203ENST00000392745 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP27.99■■■□□ 2.07
TRAF3-203ENST00000392745 TARBP1Q13395 1621 aaKnown RBP27.98■■■□□ 2.07
TRAF3-203ENST00000392745 ABCA5Q8WWZ7 1642 aa27.98■■■□□ 2.07
TRAF3-203ENST00000392745 ARAP1Q96P48 1450 aa27.97■■■□□ 2.07
TRAF3-203ENST00000392745 GAPVD1Q14C86 1478 aa27.94■■■□□ 2.06
TRAF3-203ENST00000392745 CUL7Q14999 1698 aa27.93■■■□□ 2.06
TRAF3-203ENST00000392745 ARHGAP35Q9NRY4 1499 aa27.91■■■□□ 2.06
TRAF3-203ENST00000392745 CCER1Q8TC90 406 aaPredicted RBP27.89■■■□□ 2.06
TRAF3-203ENST00000392745 WDR62O43379 1518 aa27.86■■■□□ 2.05
TRAF3-203ENST00000392745 ACIN1Q9UKV3 1341 aaKnown RBP27.84■■■□□ 2.05
TRAF3-203ENST00000392745 ERCC6Q03468 1493 aa27.83■■■□□ 2.05
Retrieved 100 of 20,778 RNA–protein pairs in 38.7 ms