RNA–Protein interactions for RNA: ENST00000261415.11

COL4A3BP-201, Transcript of collagen type IV alpha 3 binding protein, humanhuman

TSL 1 (best) BASIC

Gene COL4A3BP, Length 2,262 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A3BP-201ENST00000261415 NISCHQ9Y2I1 1504 aa43■■■■■ 4.47
COL4A3BP-201ENST00000261415 CCDC180Q9P1Z9 1646 aa37.81■■■■□ 3.64
COL4A3BP-201ENST00000261415 ZCCHC6Q5VYS8 1495 aaKnown RBP36.05■■■■□ 3.36
COL4A3BP-201ENST00000261415 ABCC9O60706 1549 aa35.94■■■■□ 3.34
COL4A3BP-201ENST00000261415 DCAF1Q9Y4B6 1507 aa35.58■■■■□ 3.29
COL4A3BP-201ENST00000261415 DCAF8L2P0C7V8 631 aa35.49■■■■□ 3.27
COL4A3BP-201ENST00000261415 MYO15BQ96JP2 1530 aa35.31■■■■□ 3.24
COL4A3BP-201ENST00000261415 NACADO15069 1562 aa35.22■■■■□ 3.23
COL4A3BP-201ENST00000261415 RB1CC1Q8TDY2 1594 aa35.02■■■■□ 3.2
COL4A3BP-201ENST00000261415 SHROOM4Q9ULL8 1493 aa34.7■■■■□ 3.14
COL4A3BP-201ENST00000261415 SCRIBQ14160 1630 aa34.63■■■■□ 3.13
COL4A3BP-201ENST00000261415 UNC13AQ9UPW8 1703 aa34.46■■■■□ 3.11
COL4A3BP-201ENST00000261415 BICRAQ9NZM4 1560 aa33.98■■■■□ 3.03
COL4A3BP-201ENST00000261415 PABPN1Q86U42 306 aaKnown RBP eCLIP33.74■■■□□ 2.99
COL4A3BP-201ENST00000261415 CECR2Q9BXF3 1484 aa33.4■■■□□ 2.94
COL4A3BP-201ENST00000261415 BAZ1AQ9NRL2 1556 aaPredicted RBP33.26■■■□□ 2.91
COL4A3BP-201ENST00000261415 MROH2BQ7Z745 1585 aa33.2■■■□□ 2.9
COL4A3BP-201ENST00000261415 SMARCA4P51532 1647 aa33.19■■■□□ 2.9
COL4A3BP-201ENST00000261415 SUPT5HO00267 1087 aaKnown RBP33.16■■■□□ 2.9
COL4A3BP-201ENST00000261415 RSF1Q96T23 1441 aaPredicted RBP33.15■■■□□ 2.9
COL4A3BP-201ENST00000261415 EIF4G1Q04637 1599 aaKnown RBP32.97■■■□□ 2.87
COL4A3BP-201ENST00000261415 WIZO95785 1651 aa32.96■■■□□ 2.87
COL4A3BP-201ENST00000261415 PEG3Q9GZU2 1588 aa32.8■■■□□ 2.84
COL4A3BP-201ENST00000261415 SMARCA2P51531 1590 aa32.68■■■□□ 2.82
COL4A3BP-201ENST00000261415 ATAD2BQ9ULI0 1458 aa32.67■■■□□ 2.82
COL4A3BP-201ENST00000261415 CC2D2AQ9P2K1 1620 aa32.6■■■□□ 2.81
COL4A3BP-201ENST00000261415 TOP2AP11388 1531 aaKnown RBP32.59■■■□□ 2.81
COL4A3BP-201ENST00000261415 BAZ1BQ9UIG0 1483 aaKnown RBP32.47■■■□□ 2.79
COL4A3BP-201ENST00000261415 NCAPD3P42695 1498 aa32.44■■■□□ 2.78
COL4A3BP-201ENST00000261415 HMGXB3Q12766 1538 aa32.44■■■□□ 2.78
COL4A3BP-201ENST00000261415 CCDC88BA6NC98 1476 aa32.19■■■□□ 2.74
COL4A3BP-201ENST00000261415 DNAJC5BQ9UF47 199 aa31.98■■■□□ 2.71
COL4A3BP-201ENST00000261415 PRDM2Q13029 1718 aa31.68■■■□□ 2.66
COL4A3BP-201ENST00000261415 CFTRP13569 1480 aa31.62■■■□□ 2.65
COL4A3BP-201ENST00000261415 CADPSQ9ULU8 1353 aa31.56■■■□□ 2.64
COL4A3BP-201ENST00000261415 CHIC1Q5VXU3 224 aa31.54■■■□□ 2.64
COL4A3BP-201ENST00000261415 LAMC3Q9Y6N6 1575 aa31.49■■■□□ 2.63
COL4A3BP-201ENST00000261415 NESP48681 1621 aa31.45■■■□□ 2.63
COL4A3BP-201ENST00000261415 ABCC8Q09428 1581 aa31.43■■■□□ 2.62
COL4A3BP-201ENST00000261415 FANCD2Q9BXW9 1451 aa31.25■■■□□ 2.59
COL4A3BP-201ENST00000261415 WRNQ14191 1432 aaPredicted RBP eCLIP31.23■■■□□ 2.59
COL4A3BP-201ENST00000261415 TRIM41Q8WV44 630 aa31.22■■■□□ 2.59
COL4A3BP-201ENST00000261415 KIF21AQ7Z4S6 1674 aa31.21■■■□□ 2.59
COL4A3BP-201ENST00000261415 SYNJ1O43426 1573 aa31.19■■■□□ 2.58
COL4A3BP-201ENST00000261415 PELP1Q8IZL8 1130 aaKnown RBP31.18■■■□□ 2.58
COL4A3BP-201ENST00000261415 PDS5BQ9NTI5 1447 aa31.16■■■□□ 2.58
COL4A3BP-201ENST00000261415 BIVM-ERCC5R4GMW8 1640 aa31.12■■■□□ 2.57
COL4A3BP-201ENST00000261415 CEP164Q9UPV0 1460 aa31.11■■■□□ 2.57
COL4A3BP-201ENST00000261415 TOP2BQ02880 1626 aa31.1■■■□□ 2.57
COL4A3BP-201ENST00000261415 CUX1P39880 1505 aa31.08■■■□□ 2.57
COL4A3BP-201ENST00000261415 DNMBPQ6XZF7 1577 aa30.95■■■□□ 2.55
COL4A3BP-201ENST00000261415 URB2Q14146 1524 aaKnown RBP30.89■■■□□ 2.54
COL4A3BP-201ENST00000261415 TOPBP1Q92547 1522 aa30.88■■■□□ 2.53
COL4A3BP-201ENST00000261415 ERCC6Q03468 1493 aa30.86■■■□□ 2.53
COL4A3BP-201ENST00000261415 MRC2Q9UBG0 1479 aa30.82■■■□□ 2.52
COL4A3BP-201ENST00000261415 FGD5Q6ZNL6 1462 aa30.79■■■□□ 2.52
COL4A3BP-201ENST00000261415 HRCP23327 699 aa30.78■■■□□ 2.52
COL4A3BP-201ENST00000261415 THOC2Q8NI27 1593 aaKnown RBP30.76■■■□□ 2.51
COL4A3BP-201ENST00000261415 WDR62O43379 1518 aa30.71■■■□□ 2.51
COL4A3BP-201ENST00000261415 POLA1P09884 1462 aaPredicted RBP30.7■■■□□ 2.51
COL4A3BP-201ENST00000261415 SOGA1O94964 1423 aa30.69■■■□□ 2.5
COL4A3BP-201ENST00000261415 RUSC2Q8N2Y8 1516 aa30.62■■■□□ 2.49
COL4A3BP-201ENST00000261415 FAM9AQ8IZU1 332 aaPredicted RBP30.61■■■□□ 2.49
COL4A3BP-201ENST00000261415 EEA1Q15075 1411 aa30.58■■■□□ 2.49
COL4A3BP-201ENST00000261415 WDR97A6NE52 1622 aa30.57■■■□□ 2.49
COL4A3BP-201ENST00000261415 RAD54L2Q9Y4B4 1467 aa30.56■■■□□ 2.48
COL4A3BP-201ENST00000261415 TARBP1Q13395 1621 aaKnown RBP30.51■■■□□ 2.47
COL4A3BP-201ENST00000261415 ABCA10Q8WWZ4 1543 aa30.51■■■□□ 2.47
COL4A3BP-201ENST00000261415 CUX2O14529 1486 aa30.49■■■□□ 2.47
COL4A3BP-201ENST00000261415 KIF27Q86VH2 1401 aa30.47■■■□□ 2.47
COL4A3BP-201ENST00000261415 CSRNP3Q8WYN3 585 aa30.38■■■□□ 2.45
COL4A3BP-201ENST00000261415 IFT140Q96RY7 1462 aa30.37■■■□□ 2.45
COL4A3BP-201ENST00000261415 ABCA5Q8WWZ7 1642 aa30.37■■■□□ 2.45
COL4A3BP-201ENST00000261415 MYT1Q01538 1121 aa30.35■■■□□ 2.45
COL4A3BP-201ENST00000261415 LOC105371045A0A1W2PR82 267 aa30.3■■■□□ 2.44
COL4A3BP-201ENST00000261415 KIF21BO75037 1637 aa30.28■■■□□ 2.44
COL4A3BP-201ENST00000261415 TDRD9Q8NDG6 1382 aaKnown RBP30.26■■■□□ 2.43
COL4A3BP-201ENST00000261415 PBRM1Q86U86 1689 aa30.25■■■□□ 2.43
COL4A3BP-201ENST00000261415 GAPVD1Q14C86 1478 aa30.23■■■□□ 2.43
COL4A3BP-201ENST00000261415 ZNF608Q9ULD9 1512 aaPredicted RBP30.22■■■□□ 2.43
COL4A3BP-201ENST00000261415 IGF1RP08069 1367 aa30.2■■■□□ 2.42
COL4A3BP-201ENST00000261415 EIF4G3O43432 1585 aaKnown RBP30.2■■■□□ 2.42
COL4A3BP-201ENST00000261415 EHMT2Q96KQ7 1210 aa30.18■■■□□ 2.42
COL4A3BP-201ENST00000261415 PRXQ9BXM0 1461 aa30.17■■■□□ 2.42
COL4A3BP-201ENST00000261415 ERICH3Q5RHP9 1530 aa30.17■■■□□ 2.42
COL4A3BP-201ENST00000261415 AQRO60306 1485 aaKnown RBP eCLIP30.17■■■□□ 2.422e-10■■■■□ 21.8
COL4A3BP-201ENST00000261415 CUL7Q14999 1698 aa30.16■■■□□ 2.42
COL4A3BP-201ENST00000261415 GOLGA3Q08378 1498 aa30.15■■■□□ 2.42
COL4A3BP-201ENST00000261415 RAPGEF2Q9Y4G8 1499 aa30.11■■■□□ 2.41
COL4A3BP-201ENST00000261415 GRIN2BQ13224 1484 aa30.06■■■□□ 2.4
COL4A3BP-201ENST00000261415 CARMIL1Q5VZK9 1371 aa30.05■■■□□ 2.4
COL4A3BP-201ENST00000261415 ADAMTS12P58397 1594 aa29.98■■■□□ 2.39
COL4A3BP-201ENST00000261415 UBTFP17480 764 aaKnown RBP29.94■■■□□ 2.38
COL4A3BP-201ENST00000261415 TNIKQ9UKE5 1360 aa29.93■■■□□ 2.38
COL4A3BP-201ENST00000261415 SNAPC4Q5SXM2 1469 aa29.92■■■□□ 2.38
COL4A3BP-201ENST00000261415 FHAD1B1AJZ9 1412 aa29.89■■■□□ 2.37
COL4A3BP-201ENST00000261415 MAGI1Q96QZ7 1491 aaPredicted RBP29.88■■■□□ 2.37
COL4A3BP-201ENST00000261415 CTTNBP2Q8WZ74 1663 aa29.84■■■□□ 2.37
COL4A3BP-201ENST00000261415 CEP162Q5TB80 1403 aa29.77■■■□□ 2.36
COL4A3BP-201ENST00000261415 SYNJ2O15056 1496 aa29.75■■■□□ 2.35
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms