RNA–Protein interactions for RNA: ENST00000460120.5

HPS3-202, Transcript of HPS3, biogenesis of lysosomal organelles complex 2 subunit 1, humanhuman

TSL 2 BASIC

Gene HPS3, Length 2,745 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS3-202ENST00000460120 NISCHQ9Y2I1 1504 aa37.72■■■■□ 3.63
HPS3-202ENST00000460120 SHROOM4Q9ULL8 1493 aa32.59■■■□□ 2.81
HPS3-202ENST00000460120 DCAF8L2P0C7V8 631 aa31.93■■■□□ 2.7
HPS3-202ENST00000460120 CCDC180Q9P1Z9 1646 aa31.91■■■□□ 2.7
HPS3-202ENST00000460120 SUPT5HO00267 1087 aaKnown RBP31.88■■■□□ 2.69
HPS3-202ENST00000460120 ZCCHC6Q5VYS8 1495 aaKnown RBP31.83■■■□□ 2.69
HPS3-202ENST00000460120 DCAF1Q9Y4B6 1507 aa30.7■■■□□ 2.51
HPS3-202ENST00000460120 CHIC1Q5VXU3 224 aa30.68■■■□□ 2.5
HPS3-202ENST00000460120 MYO15BQ96JP2 1530 aa30.55■■■□□ 2.48
HPS3-202ENST00000460120 SCRIBQ14160 1630 aa30.29■■■□□ 2.44
HPS3-202ENST00000460120 ABCC9O60706 1549 aa30.18■■■□□ 2.42
HPS3-202ENST00000460120 LOC105371045A0A1W2PR82 267 aa29.98■■■□□ 2.39
HPS3-202ENST00000460120 RSF1Q96T23 1441 aaPredicted RBP29.89■■■□□ 2.37
HPS3-202ENST00000460120 PCGF6Q9BYE7 350 aa29.8■■■□□ 2.36
HPS3-202ENST00000460120 NACADO15069 1562 aa29.63■■■□□ 2.33
HPS3-202ENST00000460120 CECR2Q9BXF3 1484 aa29.62■■■□□ 2.33
HPS3-202ENST00000460120 RB1CC1Q8TDY2 1594 aa29.6■■■□□ 2.33
HPS3-202ENST00000460120 FAM9AQ8IZU1 332 aaPredicted RBP29.56■■■□□ 2.32
HPS3-202ENST00000460120 TRIM41Q8WV44 630 aa29.55■■■□□ 2.32
HPS3-202ENST00000460120 EHMT2Q96KQ7 1210 aa29.52■■■□□ 2.32
HPS3-202ENST00000460120 HRCP23327 699 aa29.47■■■□□ 2.31
HPS3-202ENST00000460120 MROH2BQ7Z745 1585 aa29.43■■■□□ 2.3
HPS3-202ENST00000460120 WIZO95785 1651 aa29.27■■■□□ 2.28
HPS3-202ENST00000460120 PPARGC1BQ86YN6 1023 aaKnown RBP29.19■■■□□ 2.26
HPS3-202ENST00000460120 TRIM26Q12899 539 aaPredicted RBP29.03■■■□□ 2.24
HPS3-202ENST00000460120 PABPN1Q86U42 306 aaKnown RBP eCLIP28.99■■■□□ 2.23
HPS3-202ENST00000460120 BAZ1AQ9NRL2 1556 aaPredicted RBP28.95■■■□□ 2.22
HPS3-202ENST00000460120 UNC13AQ9UPW8 1703 aa28.78■■■□□ 2.2
HPS3-202ENST00000460120 SMARCA4P51532 1647 aa28.75■■■□□ 2.19
HPS3-202ENST00000460120 CCDC88BA6NC98 1476 aa28.68■■■□□ 2.18
HPS3-202ENST00000460120 ABCC8Q09428 1581 aa28.67■■■□□ 2.18
HPS3-202ENST00000460120 TOP2AP11388 1531 aaKnown RBP28.67■■■□□ 2.18
HPS3-202ENST00000460120 EIF4G1Q04637 1599 aaKnown RBP28.6■■■□□ 2.17
HPS3-202ENST00000460120 SMARCA2P51531 1590 aa28.56■■■□□ 2.16
HPS3-202ENST00000460120 TTBK1Q5TCY1 1321 aaPredicted RBP28.49■■■□□ 2.15
HPS3-202ENST00000460120 BICRAQ9NZM4 1560 aa28.48■■■□□ 2.15
HPS3-202ENST00000460120 SOGA1O94964 1423 aa28.39■■■□□ 2.13
HPS3-202ENST00000460120 RUSC2Q8N2Y8 1516 aa28.27■■■□□ 2.12
HPS3-202ENST00000460120 UBTFP17480 764 aaKnown RBP28.25■■■□□ 2.11
HPS3-202ENST00000460120 ZEB1P37275 1124 aaPredicted RBP28.2■■■□□ 2.11
HPS3-202ENST00000460120 CSRNP3Q8WYN3 585 aa28.18■■■□□ 2.1
HPS3-202ENST00000460120 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP28.14■■■□□ 2.1
HPS3-202ENST00000460120 CEP162Q5TB80 1403 aa28.13■■■□□ 2.09
HPS3-202ENST00000460120 WRNQ14191 1432 aaPredicted RBP eCLIP28.11■■■□□ 2.09
HPS3-202ENST00000460120 ATAD2BQ9ULI0 1458 aa28.1■■■□□ 2.09
HPS3-202ENST00000460120 BAZ1BQ9UIG0 1483 aaKnown RBP28.07■■■□□ 2.08
HPS3-202ENST00000460120 PEG3Q9GZU2 1588 aa28.02■■■□□ 2.08
HPS3-202ENST00000460120 RANGAP1P46060 587 aaPredicted RBP28.01■■■□□ 2.07
HPS3-202ENST00000460120 CCER1Q8TC90 406 aaPredicted RBP28■■■□□ 2.07
HPS3-202ENST00000460120 TNIKQ9UKE5 1360 aa27.98■■■□□ 2.07
HPS3-202ENST00000460120 SYNJ1O43426 1573 aa27.95■■■□□ 2.07
HPS3-202ENST00000460120 EEA1Q15075 1411 aa27.92■■■□□ 2.06
HPS3-202ENST00000460120 GOLGA3Q08378 1498 aa27.87■■■□□ 2.05
HPS3-202ENST00000460120 CEP164Q9UPV0 1460 aa27.71■■■□□ 2.03
HPS3-202ENST00000460120 RAPGEF2Q9Y4G8 1499 aa27.65■■■□□ 2.02
HPS3-202ENST00000460120 CLIP1P30622 1438 aa27.65■■■□□ 2.02
HPS3-202ENST00000460120 HNRNPUL2Q1KMD3 747 aaKnown RBP27.61■■■□□ 2.01
HPS3-202ENST00000460120 KIF21BO75037 1637 aa27.55■■■□□ 2
HPS3-202ENST00000460120 APLP2Q06481 763 aa27.53■■■□□ 2
HPS3-202ENST00000460120 TOP2BQ02880 1626 aa27.5■■□□□ 1.99
HPS3-202ENST00000460120 NCAPD3P42695 1498 aa27.48■■□□□ 1.99
HPS3-202ENST00000460120 VPS8Q8N3P4 1428 aa27.42■■□□□ 1.98
HPS3-202ENST00000460120 HMGXB3Q12766 1538 aa27.4■■□□□ 1.98
HPS3-202ENST00000460120 CUX1P39880 1505 aa27.38■■□□□ 1.97
HPS3-202ENST00000460120 BIVM-ERCC5R4GMW8 1640 aa27.34■■□□□ 1.97
HPS3-202ENST00000460120 DIEXFQ68CQ4 756 aaKnown RBP27.29■■□□□ 1.96
HPS3-202ENST00000460120 CFTRP13569 1480 aa27.27■■□□□ 1.96
HPS3-202ENST00000460120 PRXQ9BXM0 1461 aa27.24■■□□□ 1.95
HPS3-202ENST00000460120 KIF27Q86VH2 1401 aa27.23■■□□□ 1.95
HPS3-202ENST00000460120 KANK4Q5T7N3 995 aaPredicted RBP27.18■■□□□ 1.94
HPS3-202ENST00000460120 SCAF1Q9H7N4 1312 aaKnown RBP27.17■■□□□ 1.94
HPS3-202ENST00000460120 ARAP1Q96P48 1450 aa27.15■■□□□ 1.94
HPS3-202ENST00000460120 ERICH3Q5RHP9 1530 aa27.12■■□□□ 1.93
HPS3-202ENST00000460120 CUX2O14529 1486 aa27.09■■□□□ 1.93
HPS3-202ENST00000460120 CADPSQ9ULU8 1353 aa27.07■■□□□ 1.92
HPS3-202ENST00000460120 ZNF316A6NFI3 1004 aaPredicted RBP27.06■■□□□ 1.92
HPS3-202ENST00000460120 ITGAEP38570 1179 aa27.04■■□□□ 1.92
HPS3-202ENST00000460120 CC2D2AQ9P2K1 1620 aa26.98■■□□□ 1.91
HPS3-202ENST00000460120 NEUROD1Q13562 356 aa26.98■■□□□ 1.91
HPS3-202ENST00000460120 IGF1RP08069 1367 aa26.97■■□□□ 1.91
HPS3-202ENST00000460120 FGD5Q6ZNL6 1462 aa26.96■■□□□ 1.91
HPS3-202ENST00000460120 P3H3Q8IVL6 736 aa26.96■■□□□ 1.91
HPS3-202ENST00000460120 ARHGAP35Q9NRY4 1499 aa26.95■■□□□ 1.9
HPS3-202ENST00000460120 ATP1B4Q9UN42 357 aaPredicted RBP26.92■■□□□ 1.9
HPS3-202ENST00000460120 YTHDC1Q96MU7 727 aaKnown RBP26.9■■□□□ 1.9
HPS3-202ENST00000460120 ACIN1Q9UKV3 1341 aaKnown RBP26.89■■□□□ 1.9
HPS3-202ENST00000460120 CARMIL1Q5VZK9 1371 aa26.89■■□□□ 1.9
HPS3-202ENST00000460120 FANCD2Q9BXW9 1451 aa26.85■■□□□ 1.89
HPS3-202ENST00000460120 NESP48681 1621 aa26.83■■□□□ 1.89
HPS3-202ENST00000460120 PRDM2Q13029 1718 aa26.82■■□□□ 1.88
HPS3-202ENST00000460120 RAD54L2Q9Y4B4 1467 aa26.81■■□□□ 1.88
HPS3-202ENST00000460120 MIER1Q8N108 512 aa26.77■■□□□ 1.88
HPS3-202ENST00000460120 CENPBP07199 599 aaPredicted RBP26.76■■□□□ 1.87
HPS3-202ENST00000460120 PELP1Q8IZL8 1130 aaKnown RBP26.76■■□□□ 1.87
HPS3-202ENST00000460120 DHX57Q6P158 1386 aaKnown RBP26.76■■□□□ 1.87
HPS3-202ENST00000460120 CCNB3Q8WWL7 1395 aa26.73■■□□□ 1.87
HPS3-202ENST00000460120 GTF3C3Q9Y5Q9 886 aa26.7■■□□□ 1.87
HPS3-202ENST00000460120 DNAJC5BQ9UF47 199 aa26.69■■□□□ 1.86
HPS3-202ENST00000460120 RRBP1Q9P2E9 1410 aaKnown RBP26.69■■□□□ 1.86
HPS3-202ENST00000460120 FAM50AQ14320 339 aaKnown RBP26.66■■□□□ 1.86
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms