Protein–RNA interactions for Protein: Q9H347

UBQLN3, Ubiquilin-3, humanhuman

Predictions only

Length 655 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBQLN3Q9H347 AHSA2-201ENST00000357022 2437 ntTSL 1 (best) BASIC23.1■■□□□ 1.29
UBQLN3Q9H347 DCDC2C-201ENST00000399143 1476 ntAPPRIS P1 TSL 5 BASIC23.1■■□□□ 1.29
UBQLN3Q9H347 ANKRD65-205ENST00000537107 2190 ntAPPRIS P1 TSL 5 BASIC23.1■■□□□ 1.29
UBQLN3Q9H347 RRNAD1-201ENST00000368216 2254 ntAPPRIS P3 TSL 1 (best) BASIC23.09■■□□□ 1.29
UBQLN3Q9H347 U2AF1-203ENST00000398137 1019 ntTSL 1 (best) BASIC23.09■■□□□ 1.29
UBQLN3Q9H347 RPS2-210ENST00000530225 765 ntTSL 2 BASIC23.09■■□□□ 1.29
UBQLN3Q9H347 TXNL4A-208ENST00000588162 752 ntTSL 2 BASIC23.09■■□□□ 1.29
UBQLN3Q9H347 U2AF1L5-212ENST00000639996 1019 ntTSL 1 (best) BASIC23.09■■□□□ 1.29
UBQLN3Q9H347 AC073111.5-206ENST00000642087 859 ntAPPRIS P1 BASIC23.09■■□□□ 1.29
UBQLN3Q9H347 FRAT2-201ENST00000371019 2213 ntAPPRIS P1 BASIC23.08■■□□□ 1.29
UBQLN3Q9H347 AC016595.1-201ENST00000559410 383 ntTSL 3 BASIC23.08■■□□□ 1.29
UBQLN3Q9H347 TAZ-201ENST00000369776 1596 ntTSL 1 (best) BASIC23.08■■□□□ 1.29
UBQLN3Q9H347 RAB3IL1-202ENST00000394836 2284 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
UBQLN3Q9H347 OTUD5-208ENST00000610466 2487 ntTSL 5 BASIC23.08■■□□□ 1.29
UBQLN3Q9H347 POU3F3-201ENST00000361360 3064 ntAPPRIS P1 BASIC23.07■■□□□ 1.28
UBQLN3Q9H347 VEGFA-202ENST00000324450 954 ntTSL 1 (best) BASIC23.07■■□□□ 1.28
UBQLN3Q9H347 VEGFA-203ENST00000372055 1286 ntTSL 1 (best) BASIC23.07■■□□□ 1.28
UBQLN3Q9H347 VEGFA-213ENST00000482630 1146 ntTSL 1 (best) BASIC23.07■■□□□ 1.28
UBQLN3Q9H347 VEGFA-227ENST00000615393 984 ntTSL 1 (best) BASIC23.07■■□□□ 1.28
UBQLN3Q9H347 VEGFA-228ENST00000617771 1116 ntTSL 1 (best) BASIC23.07■■□□□ 1.28
UBQLN3Q9H347 VEGFA-229ENST00000621747 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC23.07■■□□□ 1.28
UBQLN3Q9H347 VEGFA-230ENST00000640482 1065 ntAPPRIS ALT2 TSL 1 (best) BASIC23.07■■□□□ 1.28
UBQLN3Q9H347 VEGFA-232ENST00000640653 1170 ntAPPRIS ALT2 TSL 1 (best) BASIC23.07■■□□□ 1.28
UBQLN3Q9H347 SSBP3-202ENST00000357475 1533 ntTSL 1 (best) BASIC23.07■■□□□ 1.28
UBQLN3Q9H347 CCDC61-204ENST00000595358 1817 ntAPPRIS P2 TSL 5 BASIC23.06■■□□□ 1.28
UBQLN3Q9H347 SRP68-213ENST00000629930 165 ntTSL 5 BASIC23.05■■□□□ 1.28
UBQLN3Q9H347 CPTP-201ENST00000343938 2190 ntAPPRIS P1 TSL 2 BASIC23.04■■□□□ 1.28
UBQLN3Q9H347 RTN2-202ENST00000344680 2063 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
UBQLN3Q9H347 GSX1-201ENST00000302945 1663 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
UBQLN3Q9H347 CRNDE-206ENST00000559432 587 ntTSL 3 BASIC23.04■■□□□ 1.28
UBQLN3Q9H347 TBCC-201ENST00000372876 1616 ntAPPRIS P1 BASIC23.04■■□□□ 1.28
UBQLN3Q9H347 BOK-AS1-201ENST00000434306 643 ntTSL 1 (best) BASIC23.03■■□□□ 1.28
UBQLN3Q9H347 RUNX2-211ENST00000625924 1458 ntAPPRIS ALT2 TSL 1 (best) BASIC23.03■■□□□ 1.28
UBQLN3Q9H347 RNF19B-201ENST00000235150 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC23.03■■□□□ 1.28
UBQLN3Q9H347 ADGRB2-204ENST00000398542 5176 ntTSL 5 BASIC23.02■■□□□ 1.28
UBQLN3Q9H347 LAGE3-201ENST00000357360 949 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
UBQLN3Q9H347 C16orf74-204ENST00000602719 1002 ntAPPRIS ALT2 TSL 3 BASIC23.02■■□□□ 1.28
UBQLN3Q9H347 AC148477.6-201ENST00000623746 465 ntBASIC23.02■■□□□ 1.28
UBQLN3Q9H347 ACAA1-220ENST00000627515 1862 ntTSL 5 BASIC23.02■■□□□ 1.28
UBQLN3Q9H347 KIAA1456-206ENST00000528753 2392 ntTSL 2 BASIC23.01■■□□□ 1.27
UBQLN3Q9H347 BCL7B-202ENST00000411832 1458 ntTSL 2 BASIC23.01■■□□□ 1.27
UBQLN3Q9H347 CHST11-203ENST00000547956 936 ntTSL 2 BASIC23.01■■□□□ 1.27
UBQLN3Q9H347 NXPH3-201ENST00000328741 2179 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
UBQLN3Q9H347 DACT2-202ENST00000366796 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC23.01■■□□□ 1.27
UBQLN3Q9H347 NRBF2-202ENST00000435510 1816 ntTSL 2 BASIC23.01■■□□□ 1.27
UBQLN3Q9H347 SV2B-203ENST00000545111 2099 ntTSL 2 BASIC23.01■■□□□ 1.27
UBQLN3Q9H347 SNX15-202ENST00000377244 1939 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
UBQLN3Q9H347 CREM-210ENST00000374721 2020 ntTSL 5 BASIC23■■□□□ 1.27
UBQLN3Q9H347 SPIRE1-202ENST00000409402 5665 ntAPPRIS ALT2 TSL 1 (best) BASIC23■■□□□ 1.27
UBQLN3Q9H347 C9orf50-201ENST00000372478 1620 ntAPPRIS P2 TSL 2 BASIC23■■□□□ 1.27
UBQLN3Q9H347 PIK3R2-207ENST00000617130 2187 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
UBQLN3Q9H347 MRPL51-201ENST00000229238 1234 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
UBQLN3Q9H347 ARTN-203ENST00000414809 1943 ntAPPRIS P4 TSL 3 BASIC22.99■■□□□ 1.27
UBQLN3Q9H347 LACTBL1-202ENST00000618559 1500 ntAPPRIS ALT2 TSL 5 BASIC22.98■■□□□ 1.27
UBQLN3Q9H347 PLEKHF2-202ENST00000519516 1144 ntAPPRIS P1 TSL 3 BASIC22.98■■□□□ 1.27
UBQLN3Q9H347 EIF5A-208ENST00000573542 1089 ntAPPRIS P1 TSL 2 BASIC22.98■■□□□ 1.27
UBQLN3Q9H347 FOXG1-201ENST00000313071 4890 ntAPPRIS P1 BASIC22.98■■□□□ 1.27
UBQLN3Q9H347 GSR-206ENST00000546342 1482 ntAPPRIS ALT2 TSL 1 (best) BASIC22.98■■□□□ 1.27
UBQLN3Q9H347 AP002414.2-202ENST00000590929 1450 ntBASIC22.98■■□□□ 1.27
UBQLN3Q9H347 ZNF639-209ENST00000496856 2033 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
UBQLN3Q9H347 CLK2-203ENST00000368361 2166 ntAPPRIS ALT1 TSL 1 (best) BASIC22.97■■□□□ 1.27
UBQLN3Q9H347 UCK1-204ENST00000372215 2167 ntAPPRIS P1 TSL 1 (best) BASIC22.97■■□□□ 1.27
UBQLN3Q9H347 TANGO2-214ENST00000447208 2086 ntTSL 3 BASIC22.97■■□□□ 1.27
UBQLN3Q9H347 CTSA-203ENST00000372459 1972 ntTSL 1 (best) BASIC22.96■■□□□ 1.27
UBQLN3Q9H347 LMO2-201ENST00000257818 2294 ntTSL 1 (best) BASIC22.96■■□□□ 1.27
UBQLN3Q9H347 BAX-202ENST00000345358 793 ntAPPRIS P1 TSL 1 (best) BASIC22.96■■□□□ 1.27
UBQLN3Q9H347 LINC01918-201ENST00000436841 797 ntTSL 2 BASIC22.96■■□□□ 1.27
UBQLN3Q9H347 ABHD17AP3-201ENST00000503096 1137 ntBASIC22.96■■□□□ 1.27
UBQLN3Q9H347 HSD17B1P1-201ENST00000590052 955 ntBASIC22.96■■□□□ 1.27
UBQLN3Q9H347 COPZ2-210ENST00000621465 895 ntAPPRIS P1 TSL 1 (best) BASIC22.96■■□□□ 1.27
UBQLN3Q9H347 BCAP31-201ENST00000345046 1589 ntAPPRIS P1 TSL 1 (best) BASIC22.96■■□□□ 1.27
UBQLN3Q9H347 SLC9A3R2-201ENST00000424542 2194 ntAPPRIS P1 TSL 1 (best) BASIC22.96■■□□□ 1.27
UBQLN3Q9H347 JAG2-201ENST00000331782 5835 ntAPPRIS P1 TSL 1 (best) BASIC22.95■■□□□ 1.27
UBQLN3Q9H347 LSM7-201ENST00000252622 529 ntAPPRIS P1 TSL 1 (best) BASIC22.95■■□□□ 1.26
UBQLN3Q9H347 G6PC3-201ENST00000269097 1533 ntAPPRIS P1 TSL 1 (best) BASIC22.95■■□□□ 1.26
UBQLN3Q9H347 PDF-201ENST00000288022 1158 ntAPPRIS P1 TSL 1 (best) BASIC22.95■■□□□ 1.26
UBQLN3Q9H347 PIGX-201ENST00000296333 953 ntAPPRIS ALT2 TSL 2 BASIC22.95■■□□□ 1.26
UBQLN3Q9H347 MTMR1-202ENST00000370390 2755 ntAPPRIS P1 TSL 1 (best) BASIC22.95■■□□□ 1.26
UBQLN3Q9H347 FAM168B-201ENST00000389915 944 ntAPPRIS P1 TSL 3 BASIC22.95■■□□□ 1.26
UBQLN3Q9H347 AC078883.1-202ENST00000450443 1397 ntTSL 3 BASIC22.95■■□□□ 1.26
UBQLN3Q9H347 LSM6-202ENST00000502781 1352 ntAPPRIS P1 TSL 1 (best) BASIC22.95■■□□□ 1.26
UBQLN3Q9H347 BANF1-208ENST00000533166 1135 ntAPPRIS P1 TSL 2 BASIC22.95■■□□□ 1.26
UBQLN3Q9H347 NKPD1-202ENST00000589776 1950 ntAPPRIS P1 BASIC22.94■■□□□ 1.26
UBQLN3Q9H347 NR6A1-203ENST00000416460 1898 ntAPPRIS ALT2 TSL 1 (best) BASIC22.94■■□□□ 1.26
UBQLN3Q9H347 TAZ-213ENST00000601016 1889 ntTSL 1 (best) BASIC22.94■■□□□ 1.26
UBQLN3Q9H347 C11orf80-210ENST00000527634 1666 ntAPPRIS ALT2 TSL 5 BASIC22.94■■□□□ 1.26
UBQLN3Q9H347 MIR219A2-201ENST00000608502 1504 ntBASIC22.94■■□□□ 1.26
UBQLN3Q9H347 SPATA33-209ENST00000579310 1490 ntAPPRIS ALT2 TSL 2 BASIC22.94■■□□□ 1.26
UBQLN3Q9H347 RCAN1-201ENST00000313806 2490 ntTSL 1 (best) BASIC22.94■■□□□ 1.26
UBQLN3Q9H347 TPT1-202ENST00000379055 948 ntTSL 2 BASIC22.93■■□□□ 1.26
UBQLN3Q9H347 THAP4-204ENST00000407315 2367 ntAPPRIS P1 TSL 1 (best) BASIC22.92■■□□□ 1.26
UBQLN3Q9H347 ZBTB25-202ENST00000555220 1440 ntTSL 1 (best) BASIC22.92■■□□□ 1.26
UBQLN3Q9H347 PKIG-207ENST00000372894 1191 ntAPPRIS P1 TSL 1 (best) BASIC22.92■■□□□ 1.26
UBQLN3Q9H347 AP000911.3-201ENST00000526377 1130 ntTSL 3 BASIC22.92■■□□□ 1.26
UBQLN3Q9H347 MFSD12-202ENST00000389395 2039 ntAPPRIS ALT2 TSL 1 (best) BASIC22.92■■□□□ 1.26
UBQLN3Q9H347 AKAP8L-208ENST00000595465 1933 ntTSL 2 BASIC22.92■■□□□ 1.26
UBQLN3Q9H347 TAF10-201ENST00000299424 1215 ntAPPRIS P1 TSL 1 (best) BASIC22.91■■□□□ 1.26
UBQLN3Q9H347 GPR25-201ENST00000304244 1224 ntAPPRIS P1 BASIC22.91■■□□□ 1.26
UBQLN3Q9H347 PPP4R4-202ENST00000328839 876 ntTSL 1 (best) BASIC22.91■■□□□ 1.26
UBQLN3Q9H347 HSD17B12-202ENST00000395700 994 ntTSL 1 (best) BASIC22.91■■□□□ 1.26
Retrieved 100 of 98,524 protein–RNA pairs in 20.9 ms