Protein–RNA interactions for Protein: Q8NHQ9

DDX55, ATP-dependent RNA helicase DDX55, humanhuman

Known RBP eCLIP

Length 600 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55Q8NHQ9 ANKRD13D-206ENST00000506119 609 ntTSL 322.17■■□□□ 1.142e-6■■■■■ 29.8
DDX55Q8NHQ9 ANKRD13D-210ENST00000508422 477 ntTSL 221.7■■□□□ 1.062e-6■■■■■ 29.8
DDX55Q8NHQ9 ANKRD13D-202ENST00000447274 2881 ntTSL 1 (best) BASIC21.66■■□□□ 1.062e-6■■■■■ 29.8
DDX55Q8NHQ9 ANKRD13D-201ENST00000308440 2219 ntTSL 2 BASIC21.21■□□□□ 0.992e-6■■■■■ 29.8
DDX55Q8NHQ9 ANKRD13D-218ENST00000515828 1111 ntTSL 1 (best) BASIC21.01■□□□□ 0.952e-6■■■■■ 29.8
DDX55Q8NHQ9 CD99L2-206ENST00000466436 988 ntAPPRIS P4 TSL 1 (best) BASIC20.37■□□□□ 0.852e-6■■■■■ 29.8
DDX55Q8NHQ9 SCYL1-212ENST00000531601 896 ntTSL 320.34■□□□□ 0.852e-6■■■■■ 29.8
DDX55Q8NHQ9 CD99L2-202ENST00000355149 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.832e-6■■■■■ 29.8
DDX55Q8NHQ9 SCYL1-202ENST00000279270 1659 ntTSL 5 BASIC20.15■□□□□ 0.822e-6■■■■■ 29.8
DDX55Q8NHQ9 GIT1-201ENST00000225394 3768 ntAPPRIS P3 TSL 1 (best) BASIC20.03■□□□□ 0.82e-6■■■■■ 29.8
DDX55Q8NHQ9 SCYL1-203ENST00000420247 2583 ntTSL 1 (best) BASIC19.64■□□□□ 0.732e-6■■■■■ 29.8
DDX55Q8NHQ9 ANKRD13D-215ENST00000513750 2081 ntTSL 219.39■□□□□ 0.692e-6■■■■■ 29.8
DDX55Q8NHQ9 ASB1-207ENST00000473306 581 ntTSL 219.34■□□□□ 0.692e-6■■■■■ 29.8
DDX55Q8NHQ9 ANKRD13D-209ENST00000508417 2009 ntTSL 219.07■□□□□ 0.642e-6■■■■■ 29.8
DDX55Q8NHQ9 PDZD8-201ENST00000334464 9699 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.562e-6■■■■■ 29.8
DDX55Q8NHQ9 GIT1-203ENST00000394869 3711 ntAPPRIS ALT2 TSL 1 (best) BASIC18.47■□□□□ 0.552e-6■■■■■ 29.8
DDX55Q8NHQ9 ASB1-208ENST00000481566 701 ntTSL 518.38■□□□□ 0.532e-6■■■■■ 29.8
DDX55Q8NHQ9 ASB1-201ENST00000264607 6994 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.532e-6■■■■■ 29.8
DDX55Q8NHQ9 CSTB-204ENST00000640406 2354 ntTSL 2 BASIC17.87■□□□□ 0.452e-6■■■■■ 29.8
DDX55Q8NHQ9 CDK7-215ENST00000629350 1149 ntTSL 5 BASIC17.68■□□□□ 0.422e-6■■■■■ 29.8
DDX55Q8NHQ9 SCYL1-210ENST00000529178 696 ntTSL 217.67■□□□□ 0.422e-6■■■■■ 29.8
DDX55Q8NHQ9 AHDC1-202ENST00000374011 6438 ntAPPRIS P1 TSL 5 BASIC17.52■□□□□ 0.42e-6■■■■■ 29.8
DDX55Q8NHQ9 AHDC1-201ENST00000247087 6334 ntAPPRIS P1 TSL 5 BASIC17.45■□□□□ 0.382e-6■■■■■ 29.8
DDX55Q8NHQ9 SCYL1-214ENST00000533862 2570 ntTSL 5 BASIC17.39■□□□□ 0.372e-6■■■■■ 29.8
DDX55Q8NHQ9 CSTB-203ENST00000639959 1855 ntTSL 517.23■□□□□ 0.352e-6■■■■■ 29.8
DDX55Q8NHQ9 SCYL1-206ENST00000525364 2584 ntTSL 5 BASIC17.21■□□□□ 0.352e-6■■■■■ 29.8
DDX55Q8NHQ9 STX10-205ENST00000587318 704 ntTSL 217.01■□□□□ 0.316e-12■■■■■ 29.8
DDX55Q8NHQ9 PPP2R5D-206ENST00000472118 2963 ntAPPRIS ALT2 TSL 5 BASIC16.77■□□□□ 0.282e-6■■■■■ 29.8
DDX55Q8NHQ9 CSTB-201ENST00000291568 2164 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.262e-6■■■■■ 29.8
DDX55Q8NHQ9 SCYL1-208ENST00000527009 2586 ntTSL 5 BASIC16.59■□□□□ 0.252e-6■■■■■ 29.8
DDX55Q8NHQ9 PPP2R5D-202ENST00000394110 2894 ntTSL 1 (best) BASIC16.3■□□□□ 0.22e-6■■■■■ 29.8
DDX55Q8NHQ9 CDK7-211ENST00000514676 1164 ntTSL 5 BASIC16.04■□□□□ 0.162e-6■■■■■ 29.8
DDX55Q8NHQ9 SCYL1-201ENST00000270176 2642 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.162e-6■■■■■ 29.8
DDX55Q8NHQ9 PPP2R5D-208ENST00000485511 3044 ntAPPRIS P3 TSL 1 (best) BASIC15.84■□□□□ 0.132e-6■■■■■ 29.8
DDX55Q8NHQ9 CDK7-201ENST00000256443 1439 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.12e-6■■■■■ 29.8
DDX55Q8NHQ9 SCYL1-205ENST00000524944 2715 ntTSL 1 (best) BASIC15.03■□□□□ -02e-6■■■■■ 29.8
DDX55Q8NHQ9 PPP2R5D-201ENST00000230402 2958 ntTSL 214.8□□□□□ -0.042e-6■■■■■ 29.8
DDX55Q8NHQ9 PPP2R5D-205ENST00000470467 2567 ntTSL 1 (best)14.75□□□□□ -0.052e-6■■■■■ 29.8
DDX55Q8NHQ9 ANKRD13D-213ENST00000512231 2768 ntTSL 214.74□□□□□ -0.052e-6■■■■■ 29.8
DDX55Q8NHQ9 CDK7-202ENST00000502604 1455 ntTSL 5 BASIC14.69□□□□□ -0.062e-6■■■■■ 29.8
DDX55Q8NHQ9 CD99L2-208ENST00000613030 3742 ntAPPRIS ALT2 TSL 2 BASIC14.63□□□□□ -0.072e-6■■■■■ 29.8
DDX55Q8NHQ9 CD99L2-205ENST00000437787 3493 ntTSL 2 BASIC14.57□□□□□ -0.082e-6■■■■■ 29.8
DDX55Q8NHQ9 SMIM8-205ENST00000448282 1214 ntTSL 1 (best)13.8□□□□□ -0.22e-6■■■■■ 29.8
DDX55Q8NHQ9 PRKAB2-201ENST00000254101 5417 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.232e-6■■■■■ 29.8
DDX55Q8NHQ9 CD99L2-203ENST00000370377 3604 ntAPPRIS ALT2 TSL 1 (best) BASIC12.9□□□□□ -0.342e-6■■■■■ 29.8
DDX55Q8NHQ9 SMIM8-207ENST00000608525 735 ntTSL 5 BASIC12.72□□□□□ -0.372e-6■■■■■ 29.8
DDX55Q8NHQ9 GIT1-204ENST00000473217 3462 ntTSL 1 (best)12.43□□□□□ -0.422e-6■■■■■ 29.8
DDX55Q8NHQ9 TCF19-201ENST00000376255 3039 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.442e-6■■■■■ 29.8
DDX55Q8NHQ9 URM1-203ENST00000372853 2650 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.514e-7■■■■■ 29.8
DDX55Q8NHQ9 SMIM8-204ENST00000392863 2437 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.512e-6■■■■■ 29.8
DDX55Q8NHQ9 CD99L2-201ENST00000346693 4935 ntTSL 1 (best)11.77□□□□□ -0.522e-6■■■■■ 29.8
DDX55Q8NHQ9 TCF19-202ENST00000376257 3290 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.632e-6■■■■■ 29.8
DDX55Q8NHQ9 URM1-204ENST00000452446 2944 ntTSL 2 BASIC11.08□□□□□ -0.644e-7■■■■■ 29.8
DDX55Q8NHQ9 SMIM8-203ENST00000369572 737 ntTSL 510.95□□□□□ -0.662e-6■■■■■ 29.8
DDX55Q8NHQ9 SMIM8-206ENST00000608353 2111 ntAPPRIS P1 TSL 5 BASIC10.23□□□□□ -0.772e-6■■■■■ 29.8
DDX55Q8NHQ9 URM1-202ENST00000372850 3045 ntTSL 1 (best) BASIC10.13□□□□□ -0.794e-7■■■■■ 29.8
DDX55Q8NHQ9 SMIM8-201ENST00000229570 2405 ntAPPRIS P1 TSL 1 (best) BASIC10□□□□□ -0.812e-6■■■■■ 29.8
DDX55Q8NHQ9 TCF19-204ENST00000542218 805 ntTSL 36.5□□□□□ -1.372e-6■■■■■ 29.8
DDX55Q8NHQ9 PGC-202ENST00000373025 1371 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.729e-7■■■■■ 29.8
DDX55Q8NHQ9 CCT4-204ENST00000544079 2261 ntTSL 2 BASIC19.42■□□□□ 0.72e-10■■■■■ 29.8
DDX55Q8NHQ9 SLC25A10-205ENST00000571876 286 ntTSL 318.17■□□□□ 0.57e-9■■■■■ 29.8
DDX55Q8NHQ9 SLC25A10-208ENST00000574884 726 ntTSL 517.83■□□□□ 0.447e-9■■■■■ 29.8
DDX55Q8NHQ9 CCT4-201ENST00000394440 2520 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.282e-10■■■■■ 29.8
DDX55Q8NHQ9 DCDC2-202ENST00000378454 4707 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.127e-9■■■■■ 29.8
DDX55Q8NHQ9 RAN-208ENST00000537745 1065 ntTSL 1 (best)13.43□□□□□ -0.268e-13■■■■■ 29.8
DDX55Q8NHQ9 HMGB3-201ENST00000325307 3560 ntAPPRIS P2 TSL 1 (best) BASIC11.57□□□□□ -0.567e-9■■■■■ 29.8
DDX55Q8NHQ9 PPIH-201ENST00000304979 752 ntAPPRIS P1 TSL 1 (best) BASIC10□□□□□ -0.814e-15■■■■■ 29.8
DDX55Q8NHQ9 PPIH-206ENST00000461351 527 ntTSL 38.05□□□□□ -1.124e-15■■■■■ 29.8
DDX55Q8NHQ9 DCDC2-201ENST00000378450 3684 ntTSL 1 (best) BASIC7.29□□□□□ -1.247e-9■■■■■ 29.8
DDX55Q8NHQ9 CCT4-203ENST00000461540 638 ntTSL 34.46□□□□□ -1.77e-9■■■■■ 29.8
DDX55Q8NHQ9 EMD-205ENST00000471965 800 ntTSL 226.48■■□□□ 1.833e-15■■■■■ 29.7
DDX55Q8NHQ9 EMD-202ENST00000369842 1379 ntAPPRIS P1 TSL 1 (best) BASIC22.7■■□□□ 1.223e-15■■■■■ 29.7
DDX55Q8NHQ9 MADD-203ENST00000349238 5873 ntAPPRIS ALT2 TSL 1 (best) BASIC14.69□□□□□ -0.061e-6■■■■■ 29.7
DDX55Q8NHQ9 MADD-201ENST00000311027 5990 ntAPPRIS P4 TSL 1 (best) BASIC13.67□□□□□ -0.221e-6■■■■■ 29.7
DDX55Q8NHQ9 MADD-204ENST00000395336 5942 ntAPPRIS ALT2 TSL 1 (best) BASIC13.62□□□□□ -0.231e-6■■■■■ 29.7
DDX55Q8NHQ9 MADD-209ENST00000406482 5614 ntAPPRIS ALT2 TSL 1 (best) BASIC13.4□□□□□ -0.261e-6■■■■■ 29.7
DDX55Q8NHQ9 MADD-207ENST00000402799 5684 ntAPPRIS ALT2 TSL 1 (best) BASIC13.26□□□□□ -0.291e-6■■■■■ 29.7
DDX55Q8NHQ9 MADD-210ENST00000407859 5744 ntAPPRIS ALT2 TSL 1 (best) BASIC12.82□□□□□ -0.361e-6■■■■■ 29.7
DDX55Q8NHQ9 MADD-206ENST00000402192 5823 ntAPPRIS ALT2 TSL 1 (best) BASIC12.63□□□□□ -0.391e-6■■■■■ 29.7
DDX55Q8NHQ9 MADD-202ENST00000342922 6005 ntAPPRIS ALT2 TSL 1 (best) BASIC12.39□□□□□ -0.431e-6■■■■■ 29.7
DDX55Q8NHQ9 DUS1L-211ENST00000578907 1084 ntTSL 333.9■■■■□ 3.021e-6■■■■■ 29.6
DDX55Q8NHQ9 RASSF7-201ENST00000397582 1731 ntAPPRIS ALT2 TSL 2 BASIC33.42■■■□□ 2.941e-6■■■■■ 29.6
DDX55Q8NHQ9 DUS1L-215ENST00000582529 1212 ntTSL 532.53■■■□□ 2.81e-6■■■■■ 29.6
DDX55Q8NHQ9 DUS1L-207ENST00000578176 937 ntTSL 532■■■□□ 2.711e-6■■■■■ 29.6
DDX55Q8NHQ9 DUS1L-206ENST00000577907 648 ntTSL 331.55■■■□□ 2.641e-6■■■■■ 29.6
DDX55Q8NHQ9 RASSF7-202ENST00000397583 1928 ntAPPRIS P3 TSL 1 (best) BASIC30.98■■■□□ 2.551e-6■■■■■ 29.6
DDX55Q8NHQ9 RASSF7-203ENST00000414138 1679 ntTSL 327.74■■■□□ 2.031e-6■■■■■ 29.6
DDX55Q8NHQ9 NPLOC4-217ENST00000574897 2365 ntTSL 225.77■■□□□ 1.721e-6■■■■■ 29.6
DDX55Q8NHQ9 SYMPK-209ENST00000598155 1603 ntTSL 524.82■■□□□ 1.566e-7■■■■■ 29.6
DDX55Q8NHQ9 GHDC-205ENST00000585735 940 ntTSL 223.74■■□□□ 1.391e-6■■■■■ 29.6
DDX55Q8NHQ9 NCK2-201ENST00000233154 2683 ntAPPRIS P1 TSL 5 BASIC23.69■■□□□ 1.381e-6■■■■■ 29.6
DDX55Q8NHQ9 RASSF7-204ENST00000431809 1745 ntAPPRIS ALT2 TSL 5 BASIC22.8■■□□□ 1.241e-6■■■■■ 29.6
DDX55Q8NHQ9 RASSF7-205ENST00000454668 1450 ntAPPRIS ALT2 TSL 1 (best) BASIC22.31■■□□□ 1.161e-6■■■■■ 29.6
DDX55Q8NHQ9 NCK2-205ENST00000451463 1795 ntTSL 2 BASIC22.25■■□□□ 1.151e-6■■■■■ 29.6
DDX55Q8NHQ9 DUS1L-208ENST00000578264 1071 ntTSL 520.57■□□□□ 0.881e-6■■■■■ 29.6
DDX55Q8NHQ9 GOLGA2-215ENST00000639983 1038 ntTSL 1 (best) BASIC20.12■□□□□ 0.814e-9■■■■■ 29.6
DDX55Q8NHQ9 SYMPK-211ENST00000598364 995 ntTSL 318.78■□□□□ 0.66e-7■■■■■ 29.6
DDX55Q8NHQ9 NPLOC4-207ENST00000572346 567 ntTSL 418.5■□□□□ 0.551e-6■■■■■ 29.6
DDX55Q8NHQ9 SMO-201ENST00000249373 3738 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.381e-6■■■■■ 29.6
DDX55Q8NHQ9 NCK2-203ENST00000393349 2371 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.261e-6■■■■■ 29.6
Retrieved 100 of 15,504 protein–RNA pairs in 456.7 ms