Protein–RNA interactions for Protein: Q92889

ERCC4, DNA repair endonuclease XPF, humanhuman

Predicted RBP Predictions only

Length 916 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ERCC4Q92889 ACTN4-202ENST00000390009 2102 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
ERCC4Q92889 TRMT6-201ENST00000203001 2327 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
ERCC4Q92889 ARMC10-209ENST00000454559 2347 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
ERCC4Q92889 FOXD4L1-201ENST00000306507 2491 ntAPPRIS P1 BASIC20.93■□□□□ 0.94
ERCC4Q92889 MDK-201ENST00000359803 985 ntAPPRIS P2 TSL 2 BASIC20.93■□□□□ 0.94
ERCC4Q92889 CKBP1-201ENST00000565489 1086 ntBASIC20.93■□□□□ 0.94
ERCC4Q92889 AF186192.3-201ENST00000583427 947 ntBASIC20.93■□□□□ 0.94
ERCC4Q92889 GPR83-202ENST00000539203 1909 ntTSL 5 BASIC20.93■□□□□ 0.94
ERCC4Q92889 NOMO3-201ENST00000263012 3911 ntAPPRIS ALT2 TSL 1 (best) BASIC20.93■□□□□ 0.94
ERCC4Q92889 DHRS4-204ENST00000543741 1340 ntTSL 2 BASIC20.93■□□□□ 0.94
ERCC4Q92889 TP53BP2-201ENST00000343537 4651 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
ERCC4Q92889 PIGZ-202ENST00000412723 2701 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
ERCC4Q92889 SBF2-AS1-201ENST00000498905 2709 ntTSL 5 BASIC20.93■□□□□ 0.94
ERCC4Q92889 AC127496.1-202ENST00000573602 2091 ntTSL 2 BASIC20.93■□□□□ 0.94
ERCC4Q92889 FAM53A-207ENST00000489363 2776 ntTSL 2 BASIC20.93■□□□□ 0.94
ERCC4Q92889 KHDC1-202ENST00000370384 1430 ntAPPRIS ALT2 TSL 1 (best) BASIC20.93■□□□□ 0.94
ERCC4Q92889 KIAA1522-202ENST00000373480 5294 ntAPPRIS ALT2 TSL 1 (best) BASIC20.93■□□□□ 0.94
ERCC4Q92889 KIAA1522-203ENST00000373481 5293 ntAPPRIS ALT2 TSL 2 BASIC20.93■□□□□ 0.94
ERCC4Q92889 RELA-226ENST00000612991 2266 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
ERCC4Q92889 CCK-202ENST00000396169 1527 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
ERCC4Q92889 PSMD8-210ENST00000620216 1538 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
ERCC4Q92889 MYZAP-201ENST00000267853 2361 ntAPPRIS P3 TSL 1 (best) BASIC20.93■□□□□ 0.94
ERCC4Q92889 CPEB3-203ENST00000614585 5789 ntAPPRIS P3 TSL 5 BASIC20.93■□□□□ 0.94
ERCC4Q92889 CLDN5-202ENST00000406028 2548 ntTSL 2 BASIC20.93■□□□□ 0.94
ERCC4Q92889 FARP1-242ENST00000627049 5103 ntTSL 5 BASIC20.92■□□□□ 0.94
ERCC4Q92889 CD1E-205ENST00000368160 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC20.92■□□□□ 0.94
ERCC4Q92889 SEC61A2-201ENST00000298428 1893 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
ERCC4Q92889 STXBP2-203ENST00000441779 1914 ntTSL 2 BASIC20.92■□□□□ 0.94
ERCC4Q92889 ALDH5A1-202ENST00000357578 5248 ntAPPRIS ALT2 TSL 1 (best) BASIC20.92■□□□□ 0.94
ERCC4Q92889 PNMA6E-201ENST00000445091 2192 ntAPPRIS P1 TSL 2 BASIC20.92■□□□□ 0.94
ERCC4Q92889 TCF7-204ENST00000395029 3330 ntAPPRIS ALT2 TSL 5 BASIC20.92■□□□□ 0.94
ERCC4Q92889 AL590648.2-201ENST00000427949 2225 ntTSL 2 BASIC20.92■□□□□ 0.94
ERCC4Q92889 METTL21A-201ENST00000272839 1210 ntTSL 5 BASIC20.92■□□□□ 0.94
ERCC4Q92889 AGTRAP-203ENST00000376629 1100 ntAPPRIS ALT2 TSL 1 (best) BASIC20.92■□□□□ 0.94
ERCC4Q92889 TLCD1-202ENST00000394933 784 ntTSL 2 BASIC20.92■□□□□ 0.94
ERCC4Q92889 SMIM19-201ENST00000414154 793 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
ERCC4Q92889 STK24-AS1-201ENST00000434547 1278 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
ERCC4Q92889 AC073111.3-201ENST00000478789 635 ntAPPRIS P1 TSL 3 BASIC20.92■□□□□ 0.94
ERCC4Q92889 C5orf49-202ENST00000509627 1020 ntAPPRIS ALT2 TSL 1 (best) BASIC20.92■□□□□ 0.94
ERCC4Q92889 AC019257.1-201ENST00000517676 557 ntTSL 5 BASIC20.92■□□□□ 0.94
ERCC4Q92889 LINC01301-204ENST00000530725 577 ntTSL 4 BASIC20.92■□□□□ 0.94
ERCC4Q92889 ARMC4P1-202ENST00000576034 643 ntTSL 2 BASIC20.92■□□□□ 0.94
ERCC4Q92889 ICAM2-207ENST00000579687 1154 ntAPPRIS P1 TSL 3 BASIC20.92■□□□□ 0.94
ERCC4Q92889 FLT3LG-211ENST00000600429 984 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
ERCC4Q92889 AC130371.2-201ENST00000619443 611 ntBASIC20.92■□□□□ 0.94
ERCC4Q92889 VHL-202ENST00000345392 2696 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
ERCC4Q92889 JAKMIP1-208ENST00000637373 1362 ntTSL 5 BASIC20.92■□□□□ 0.94
ERCC4Q92889 KCNA2-201ENST00000316361 2827 ntAPPRIS P1 TSL 2 BASIC20.92■□□□□ 0.94
ERCC4Q92889 KRT8P45-201ENST00000414328 1447 ntBASIC20.92■□□□□ 0.94
ERCC4Q92889 AKIP1-207ENST00000529876 1421 ntTSL 2 BASIC20.92■□□□□ 0.94
ERCC4Q92889 LEMD2-214ENST00000614475 2883 ntAPPRIS P1 TSL 5 BASIC20.92■□□□□ 0.94
ERCC4Q92889 PHB2-203ENST00000535923 1515 ntAPPRIS P2 TSL 5 BASIC20.92■□□□□ 0.94
ERCC4Q92889 PIP4K2C-202ENST00000422156 1558 ntTSL 2 BASIC20.92■□□□□ 0.94
ERCC4Q92889 AL162741.1-201ENST00000565563 1558 ntBASIC20.92■□□□□ 0.94
ERCC4Q92889 PPM1H-201ENST00000228705 6353 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
ERCC4Q92889 SETMAR-206ENST00000430981 1671 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
ERCC4Q92889 GPS1-201ENST00000306823 1842 ntAPPRIS P3 TSL 1 (best) BASIC20.92■□□□□ 0.94
ERCC4Q92889 RPS6KB1-204ENST00000443572 1913 ntTSL 2 BASIC20.92■□□□□ 0.94
ERCC4Q92889 LINC00535-201ENST00000501400 1914 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
ERCC4Q92889 AMDHD2-203ENST00000413459 2049 ntTSL 2 BASIC20.92■□□□□ 0.94
ERCC4Q92889 REXO1L9P-201ENST00000604264 2108 ntBASIC20.92■□□□□ 0.94
ERCC4Q92889 DDX17-211ENST00000640332 2190 ntAPPRIS P3 TSL 1 (best) BASIC20.92■□□□□ 0.94
ERCC4Q92889 DDX17-212ENST00000640668 2196 ntAPPRIS ALT2 TSL 1 (best) BASIC20.92■□□□□ 0.94
ERCC4Q92889 ZNF133-211ENST00000538547 2245 ntTSL 2 BASIC20.92■□□□□ 0.94
ERCC4Q92889 ZNF200-202ENST00000396870 2373 ntAPPRIS ALT2 TSL 1 (best) BASIC20.92■□□□□ 0.94
ERCC4Q92889 KIF21B-203ENST00000422435 5519 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
ERCC4Q92889 SH2D3C-203ENST00000373277 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC20.91■□□□□ 0.94
ERCC4Q92889 RBM17-201ENST00000379888 2755 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
ERCC4Q92889 CDH24-201ENST00000267383 2873 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
ERCC4Q92889 PLBD2-201ENST00000280800 4800 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
ERCC4Q92889 SERF1A-201ENST00000317633 963 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
ERCC4Q92889 LRRC27-201ENST00000344079 1809 ntAPPRIS ALT2 TSL 2 BASIC20.91■□□□□ 0.94
ERCC4Q92889 ATRIP-203ENST00000357105 2403 ntTSL 2 BASIC20.91■□□□□ 0.94
ERCC4Q92889 HLA-DRB1-201ENST00000360004 1229 ntAPPRIS P1 BASIC20.91■□□□□ 0.94
ERCC4Q92889 EEF1AKMT2-201ENST00000368836 1462 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
ERCC4Q92889 PDCD2-202ENST00000392090 936 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
ERCC4Q92889 MESTP1-201ENST00000404287 994 ntBASIC20.91■□□□□ 0.94
ERCC4Q92889 RORA-204ENST00000449337 1701 ntAPPRIS ALT2 TSL 1 (best) BASIC20.91■□□□□ 0.94
ERCC4Q92889 GPR42-201ENST00000454971 1804 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
ERCC4Q92889 COPS7A-210ENST00000539735 1832 ntAPPRIS P1 TSL 5 BASIC20.91■□□□□ 0.94
ERCC4Q92889 TMEM72-203ENST00000544540 1018 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
ERCC4Q92889 AL031600.3-201ENST00000566287 1124 ntTSL 5 BASIC20.91■□□□□ 0.94
ERCC4Q92889 TEFM-205ENST00000581216 1891 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
ERCC4Q92889 AC063977.6-201ENST00000600074 1763 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
ERCC4Q92889 ZYG11A-203ENST00000612017 3682 ntTSL 5 BASIC20.91■□□□□ 0.94
ERCC4Q92889 MMD2-204ENST00000612910 778 ntTSL 5 BASIC20.91■□□□□ 0.94
ERCC4Q92889 NIPAL2-202ENST00000430223 4496 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
ERCC4Q92889 PRDM8-203ENST00000504452 3706 ntAPPRIS P1 TSL 5 BASIC20.91■□□□□ 0.94
ERCC4Q92889 CHRD-202ENST00000348986 3155 ntAPPRIS ALT2 TSL 5 BASIC20.91■□□□□ 0.94
ERCC4Q92889 CAPN1-201ENST00000279247 3007 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
ERCC4Q92889 ARFGAP2-229ENST00000627920 2613 ntTSL 2 BASIC20.91■□□□□ 0.94
ERCC4Q92889 MAP4K4-202ENST00000324219 7526 ntTSL 5 BASIC20.9■□□□□ 0.94
ERCC4Q92889 CCDC137-201ENST00000329214 2468 ntAPPRIS P2 TSL 1 (best) BASIC20.9■□□□□ 0.94
ERCC4Q92889 MED9-201ENST00000268711 2228 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
ERCC4Q92889 PRRT1-201ENST00000211413 1909 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
ERCC4Q92889 FLYWCH1P1-201ENST00000460917 1874 ntBASIC20.9■□□□□ 0.94
ERCC4Q92889 MROH1-202ENST00000423230 1712 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
ERCC4Q92889 VPS26B-202ENST00000525095 1558 ntAPPRIS P1 TSL 5 BASIC20.9■□□□□ 0.94
ERCC4Q92889 AC012313.1-201ENST00000593393 3059 ntBASIC20.9■□□□□ 0.94
ERCC4Q92889 IFNLR1-202ENST00000327575 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC20.9■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 21.2 ms