Protein–RNA interactions for Protein: O43490

PROM1, Prominin-1, humanhuman

Predictions only

Length 865 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PROM1O43490 PCED1A-201ENST00000356872 1706 ntTSL 2 BASIC17.52■□□□□ 0.39
PROM1O43490 CD19-206ENST00000567541 1707 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.39
PROM1O43490 USP48-204ENST00000400301 4309 ntTSL 1 (best) BASIC17.52■□□□□ 0.39
PROM1O43490 NEUROD2-201ENST00000302584 2041 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
PROM1O43490 MPP5-201ENST00000261681 5552 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
PROM1O43490 FGFR3-202ENST00000340107 4293 ntAPPRIS ALT2 TSL 5 BASIC17.52■□□□□ 0.39
PROM1O43490 CYP51A1P1-201ENST00000492267 1507 ntBASIC17.52■□□□□ 0.39
PROM1O43490 GAS7-210ENST00000579158 1528 ntTSL 1 (best) BASIC17.52■□□□□ 0.39
PROM1O43490 CPSF3-201ENST00000238112 2345 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
PROM1O43490 SPERT-202ENST00000378966 1842 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
PROM1O43490 BSG-201ENST00000333511 1974 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
PROM1O43490 PNPLA2-201ENST00000336615 2428 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
PROM1O43490 ABCG4-206ENST00000622721 2553 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
PROM1O43490 TRIM41-202ENST00000351937 2696 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
PROM1O43490 CCNJ-202ENST00000403870 2830 ntTSL 5 BASIC17.51■□□□□ 0.39
PROM1O43490 TBC1D4-204ENST00000431480 6347 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
PROM1O43490 CSNK2A2-201ENST00000262506 1701 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
PROM1O43490 SLC16A13-201ENST00000308027 1748 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
PROM1O43490 PPM1G-201ENST00000344034 2311 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
PROM1O43490 TMEM88B-201ENST00000378821 492 ntAPPRIS P1 TSL 2 BASIC17.51■□□□□ 0.39
PROM1O43490 PDE9A-206ENST00000380328 1875 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
PROM1O43490 TSPY8-202ENST00000383000 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
PROM1O43490 TSPY2-202ENST00000383042 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
PROM1O43490 MROH1-202ENST00000423230 1712 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
PROM1O43490 TSPY3-201ENST00000424594 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
PROM1O43490 TSPY10-202ENST00000444056 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
PROM1O43490 TRIM73-205ENST00000450434 1425 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
PROM1O43490 AC013402.1-201ENST00000456999 561 ntTSL 4 BASIC17.51■□□□□ 0.39
PROM1O43490 AC098829.1-201ENST00000502344 630 ntTSL 3 BASIC17.51■□□□□ 0.39
PROM1O43490 LINC01024-205ENST00000521563 939 ntTSL 3 BASIC17.51■□□□□ 0.39
PROM1O43490 TMEM220-AS1-201ENST00000579114 575 ntTSL 4 BASIC17.51■□□□□ 0.39
PROM1O43490 LDLRAD4-211ENST00000587757 2171 ntTSL 2 BASIC17.51■□□□□ 0.39
PROM1O43490 SYT3-206ENST00000600079 2463 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
PROM1O43490 RAB4A-205ENST00000618010 2799 ntTSL 3 BASIC17.51■□□□□ 0.39
PROM1O43490 AC112497.1-201ENST00000624824 639 ntBASIC17.51■□□□□ 0.39
PROM1O43490 PITPNB-211ENST00000634017 1017 ntAPPRIS ALT1 TSL 2 BASIC17.51■□□□□ 0.39
PROM1O43490 DAG1-219ENST00000538711 5582 ntAPPRIS P1 TSL 5 BASIC17.51■□□□□ 0.39
PROM1O43490 ZDHHC2-201ENST00000262096 6377 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
PROM1O43490 COPS7A-215ENST00000543155 2127 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
PROM1O43490 GAREM2-201ENST00000401533 4161 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
PROM1O43490 LTBP3-202ENST00000322147 4046 ntAPPRIS P3 TSL 1 (best) BASIC17.51■□□□□ 0.39
PROM1O43490 TMEM131-201ENST00000186436 6640 ntAPPRIS P1 TSL 5 BASIC17.51■□□□□ 0.39
PROM1O43490 EGFL7-204ENST00000406555 1529 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
PROM1O43490 NDN-201ENST00000331837 1931 ntAPPRIS P1 BASIC17.51■□□□□ 0.39
PROM1O43490 SERPINA4-201ENST00000298841 1784 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
PROM1O43490 AP5S1-202ENST00000379567 1791 ntAPPRIS P1 TSL 2 BASIC17.51■□□□□ 0.39
PROM1O43490 DOC2A-208ENST00000564944 1782 ntAPPRIS P1 TSL 5 BASIC17.51■□□□□ 0.39
PROM1O43490 FOXP4-202ENST00000373057 3300 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
PROM1O43490 SIGIRR-220ENST00000531205 1649 ntTSL 2 BASIC17.5■□□□□ 0.39
PROM1O43490 AP1AR-202ENST00000309703 2337 ntAPPRIS ALT1 TSL 1 (best) BASIC17.5■□□□□ 0.39
PROM1O43490 PTPN12-201ENST00000248594 3406 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
PROM1O43490 ART1-201ENST00000250693 1312 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
PROM1O43490 CIRBP-201ENST00000320936 1328 ntAPPRIS P3 TSL 1 (best) BASIC17.5■□□□□ 0.39
PROM1O43490 CIRBP-207ENST00000586472 1303 ntAPPRIS P3 TSL 3 BASIC17.5■□□□□ 0.39
PROM1O43490 EVX1-202ENST00000496902 2955 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
PROM1O43490 PRDM5-201ENST00000264808 5330 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
PROM1O43490 MCOLN2-201ENST00000284027 1729 ntAPPRIS P1 TSL 5 BASIC17.5■□□□□ 0.39
PROM1O43490 ALKBH4-201ENST00000292566 2105 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
PROM1O43490 XYLT2-203ENST00000507602 2107 ntTSL 2 BASIC17.5■□□□□ 0.39
PROM1O43490 EDNRA-206ENST00000511804 1569 ntTSL 2 BASIC17.5■□□□□ 0.39
PROM1O43490 FAM3A-201ENST00000322269 1815 ntTSL 5 BASIC17.5■□□□□ 0.39
PROM1O43490 POMZP3-201ENST00000275569 1259 ntTSL 2 BASIC17.5■□□□□ 0.39
PROM1O43490 MED4-202ENST00000378586 931 ntAPPRIS ALT2 TSL 2 BASIC17.5■□□□□ 0.39
PROM1O43490 AC009947.2-201ENST00000444014 672 ntBASIC17.5■□□□□ 0.39
PROM1O43490 AC008825.1-201ENST00000504398 452 ntTSL 3 BASIC17.5■□□□□ 0.39
PROM1O43490 PPOX-219ENST00000544598 813 ntTSL 2 BASIC17.5■□□□□ 0.39
PROM1O43490 AC011773.3-202ENST00000549291 790 ntTSL 3 BASIC17.5■□□□□ 0.39
PROM1O43490 NUDT16L1-203ENST00000586252 922 ntTSL 3 BASIC17.5■□□□□ 0.39
PROM1O43490 AL138966.2-201ENST00000621997 464 ntBASIC17.5■□□□□ 0.39
PROM1O43490 KRAS-203ENST00000556131 1696 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
PROM1O43490 ICA1-206ENST00000402384 2458 ntAPPRIS P3 TSL 2 BASIC17.5■□□□□ 0.39
PROM1O43490 CASD1-201ENST00000297273 3942 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
PROM1O43490 ULK2-201ENST00000361658 3908 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
PROM1O43490 STEAP1B-201ENST00000404369 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
PROM1O43490 STRADB-202ENST00000392249 2190 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
PROM1O43490 EMX2-203ENST00000553456 2897 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
PROM1O43490 FAM110A-203ENST00000381939 1737 ntAPPRIS P1 TSL 3 BASIC17.5■□□□□ 0.39
PROM1O43490 ELMOD1-202ENST00000443271 1990 ntAPPRIS P1 TSL 2 BASIC17.49■□□□□ 0.39
PROM1O43490 SYTL1-208ENST00000543823 2229 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
PROM1O43490 C6orf118-201ENST00000230301 1812 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
PROM1O43490 SALRNA1-201ENST00000555871 2086 ntTSL 4 BASIC17.49■□□□□ 0.39
PROM1O43490 VMAC-201ENST00000339485 2254 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
PROM1O43490 HOXC11-201ENST00000243082 2039 ntTSL 3 BASIC17.49■□□□□ 0.39
PROM1O43490 FAM49B-214ENST00000519540 2021 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
PROM1O43490 BDKRB1-202ENST00000553356 1526 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
PROM1O43490 TMEM160-201ENST00000253047 663 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
PROM1O43490 BUD23-201ENST00000265758 1230 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
PROM1O43490 SCGB3A1-201ENST00000292641 521 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
PROM1O43490 BAD-201ENST00000309032 929 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
PROM1O43490 RHOC-204ENST00000369633 1295 ntAPPRIS P1 TSL 3 BASIC17.49■□□□□ 0.39
PROM1O43490 ICAM4-202ENST00000380770 1211 ntAPPRIS P3 TSL 1 (best) BASIC17.49■□□□□ 0.39
PROM1O43490 SELENOF-203ENST00000401030 727 ntTSL 2 BASIC17.49■□□□□ 0.39
PROM1O43490 ICAM1-202ENST00000423829 1296 ntTSL 2 BASIC17.49■□□□□ 0.39
PROM1O43490 PDE6B-202ENST00000429163 2120 ntTSL 2 BASIC17.49■□□□□ 0.39
PROM1O43490 GRAMD4P1-201ENST00000435181 1110 ntBASIC17.49■□□□□ 0.39
PROM1O43490 AC007563.2-201ENST00000447289 552 ntTSL 5 BASIC17.49■□□□□ 0.39
PROM1O43490 REPIN1-210ENST00000482680 1029 ntTSL 2 BASIC17.49■□□□□ 0.39
PROM1O43490 AZIN1-AS1-215ENST00000522939 644 ntTSL 2 BASIC17.49■□□□□ 0.39
PROM1O43490 MCRIP1-206ENST00000573478 1123 ntTSL 2 BASIC17.49■□□□□ 0.39
PROM1O43490 NEK4P2-201ENST00000580004 1012 ntBASIC17.49■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 20.4 ms