Protein–RNA interactions for Protein: Q8NHQ9

DDX55, ATP-dependent RNA helicase DDX55, humanhuman

Known RBP eCLIP

Length 600 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55Q8NHQ9 PDAP1-202ENST00000426447 767 ntTSL 518.57■□□□□ 0.563e-12■□□□□ 10.8
DDX55Q8NHQ9 CTSD-211ENST00000637387 1597 ntAPPRIS ALT2 TSL 5 BASIC17.62■□□□□ 0.413e-12■□□□□ 10.8
DDX55Q8NHQ9 CTSD-208ENST00000636843 1512 ntAPPRIS ALT2 TSL 5 BASIC15.71■□□□□ 0.113e-12■□□□□ 10.8
DDX55Q8NHQ9 USP14-208ENST00000582707 1803 ntTSL 5 BASIC14.97□□□□□ -0.016e-8■□□□□ 10.8
DDX55Q8NHQ9 USP14-202ENST00000383589 2168 ntTSL 5 BASIC13.61□□□□□ -0.236e-8■□□□□ 10.8
DDX55Q8NHQ9 USP14-203ENST00000400266 1681 ntTSL 2 BASIC13.07□□□□□ -0.326e-8■□□□□ 10.8
DDX55Q8NHQ9 USP14-205ENST00000578942 3189 ntTSL 211.66□□□□□ -0.546e-8■□□□□ 10.8
DDX55Q8NHQ9 USP14-201ENST00000261601 4921 ntAPPRIS P1 TSL 1 (best) BASIC8.94□□□□□ -0.986e-8■□□□□ 10.8
DDX55Q8NHQ9 PDAP1-205ENST00000626285 120 ntTSL 5 BASIC8.79□□□□□ -13e-12■□□□□ 10.8
DDX55Q8NHQ9 PDAP1-203ENST00000488214 274 ntTSL 37.94□□□□□ -1.143e-12■□□□□ 10.8
DDX55Q8NHQ9 USP14-204ENST00000578786 1104 ntTSL 55.54□□□□□ -1.526e-8■□□□□ 10.8
DDX55Q8NHQ9 AGT-201ENST00000366667 2291 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.165e-26■□□□□ 10.8
DDX55Q8NHQ9 CLTC-215ENST00000621829 8587 ntAPPRIS ALT1 TSL 2 BASIC13.14□□□□□ -0.317e-24■□□□□ 10.8
DDX55Q8NHQ9 CLTC-201ENST00000269122 7760 ntAPPRIS P3 TSL 1 (best) BASIC8.82□□□□□ -17e-24■□□□□ 10.8
DDX55Q8NHQ9 CLTC-209ENST00000498711 2941 ntTSL 1 (best)4□□□□□ -1.777e-24■□□□□ 10.8
DDX55Q8NHQ9 ERBB2-219ENST00000584601 4792 ntTSL 2 BASIC13.25□□□□□ -0.295e-10■□□□□ 10.8
DDX55Q8NHQ9 BBC3-204ENST00000449228 1827 ntTSL 1 (best) BASIC28.25■■■□□ 2.113e-7■□□□□ 10.8
DDX55Q8NHQ9 BBC3-202ENST00000341983 1538 ntTSL 1 (best) BASIC26.3■■□□□ 1.83e-7■□□□□ 10.8
DDX55Q8NHQ9 BBC3-203ENST00000439096 1838 ntAPPRIS P1 TSL 1 (best) BASIC26.1■■□□□ 1.773e-7■□□□□ 10.8
DDX55Q8NHQ9 BBC3-201ENST00000300880 1347 ntTSL 1 (best) BASIC22.28■■□□□ 1.163e-7■□□□□ 10.8
DDX55Q8NHQ9 BBC3-206ENST00000601438 1747 nt19.92■□□□□ 0.783e-7■□□□□ 10.8
DDX55Q8NHQ9 EIF4G2-225ENST00000532383 6769 ntTSL 1 (best)10.42□□□□□ -0.744e-25■□□□□ 10.8
DDX55Q8NHQ9 EIF4G2-201ENST00000339995 3978 ntAPPRIS ALT2 TSL 1 (best) BASIC10.14□□□□□ -0.794e-25■□□□□ 10.8
DDX55Q8NHQ9 EIF4G2-202ENST00000396525 3346 ntAPPRIS ALT2 TSL 5 BASIC8.64□□□□□ -1.034e-25■□□□□ 10.8
DDX55Q8NHQ9 EIF4G2-205ENST00000525681 3654 ntAPPRIS ALT2 TSL 1 (best) BASIC8.34□□□□□ -1.074e-25■□□□□ 10.8
DDX55Q8NHQ9 EIF4G2-208ENST00000526148 4001 ntAPPRIS ALT2 TSL 1 (best) BASIC7.87□□□□□ -1.154e-25■□□□□ 10.8
DDX55Q8NHQ9 RHOT2-202ENST00000561711 644 ntTSL 327.47■■□□□ 1.991e-8■□□□□ 10.8
DDX55Q8NHQ9 KIAA2013-201ENST00000376572 2815 ntAPPRIS P1 TSL 1 (best) BASIC25.92■■□□□ 1.744e-17■□□□□ 10.8
DDX55Q8NHQ9 RHOT2-221ENST00000569358 1273 ntTSL 525.18■■□□□ 1.621e-8■□□□□ 10.8
DDX55Q8NHQ9 INSIG1-202ENST00000342407 1127 ntTSL 2 BASIC23.29■■□□□ 1.322e-18■□□□□ 10.8
DDX55Q8NHQ9 RHOT2-213ENST00000565004 1014 ntTSL 519.82■□□□□ 0.761e-8■□□□□ 10.8
DDX55Q8NHQ9 INSIG1-203ENST00000344756 2623 ntTSL 5 BASIC19.26■□□□□ 0.672e-18■□□□□ 10.8
DDX55Q8NHQ9 INSIG1-201ENST00000340368 3010 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.352e-18■□□□□ 10.8
DDX55Q8NHQ9 RHOT2-227ENST00000602564 3695 ntTSL 515.36■□□□□ 0.051e-8■□□□□ 10.8
DDX55Q8NHQ9 INSIG1-206ENST00000476756 1320 ntTSL 214.07□□□□□ -0.162e-18■□□□□ 10.8
DDX55Q8NHQ9 INO80E-204ENST00000562291 255 ntTSL 311.91□□□□□ -0.57e-8■□□□□ 10.8
DDX55Q8NHQ9 MDK-207ENST00000441869 540 ntTSL 327.38■■□□□ 1.971e-9■□□□□ 10.8
DDX55Q8NHQ9 TRIM28-202ENST00000341753 2709 ntTSL 1 (best) BASIC23.11■■□□□ 1.293e-21■□□□□ 10.8
DDX55Q8NHQ9 TRIM28-201ENST00000253024 2960 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.143e-21■□□□□ 10.8
DDX55Q8NHQ9 ASGR2-206ENST00000576487 1055 ntTSL 1 (best)18.9■□□□□ 0.628e-8■□□□□ 10.8
DDX55Q8NHQ9 ASGR2-204ENST00000450034 932 ntTSL 217■□□□□ 0.318e-8■□□□□ 10.8
DDX55Q8NHQ9 UBE2O-201ENST00000319380 5436 ntAPPRIS P2 TSL 1 (best) BASIC19.55■□□□□ 0.721e-8■□□□□ 10.8
DDX55Q8NHQ9 TRMT2A-204ENST00000439169 2473 ntTSL 5 BASIC22.51■■□□□ 1.191e-8■□□□□ 10.8
DDX55Q8NHQ9 TRMT2A-216ENST00000487668 1040 ntTSL 522.21■■□□□ 1.151e-8■□□□□ 10.8
DDX55Q8NHQ9 TRMT2A-203ENST00000404751 2498 ntAPPRIS ALT2 TSL 2 BASIC21.07■□□□□ 0.961e-8■□□□□ 10.8
DDX55Q8NHQ9 TRMT2A-206ENST00000444845 739 ntTSL 318.79■□□□□ 0.61e-8■□□□□ 10.8
DDX55Q8NHQ9 FGL1-201ENST00000381840 1335 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.314e-14■□□□□ 10.8
DDX55Q8NHQ9 FGL1-204ENST00000398056 1967 ntAPPRIS P1 TSL 2 BASIC12.78□□□□□ -0.364e-14■□□□□ 10.8
DDX55Q8NHQ9 FGL1-205ENST00000427924 1247 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.634e-14■□□□□ 10.8
DDX55Q8NHQ9 FGL1-202ENST00000381841 1374 ntAPPRIS P1 TSL 1 (best) BASIC10.96□□□□□ -0.654e-14■□□□□ 10.8
DDX55Q8NHQ9 FGL1-203ENST00000398054 1462 ntAPPRIS P1 TSL 5 BASIC10.61□□□□□ -0.714e-14■□□□□ 10.8
DDX55Q8NHQ9 FGL1-209ENST00000522444 1367 ntAPPRIS P1 TSL 1 (best) BASIC5.94□□□□□ -1.464e-14■□□□□ 10.8
DDX55Q8NHQ9 APOM-202ENST00000375918 922 ntTSL 2 BASIC9.93□□□□□ -0.822e-15■□□□□ 10.8
DDX55Q8NHQ9 RPL10-217ENST00000492572 1656 ntTSL 519.97■□□□□ 0.792e-17■□□□□ 10.8
DDX55Q8NHQ9 RPL10-208ENST00000449494 622 ntTSL 518.03■□□□□ 0.482e-17■□□□□ 10.8
DDX55Q8NHQ9 RPL10-202ENST00000369817 1284 ntAPPRIS P1 TSL 5 BASIC16.51■□□□□ 0.232e-17■□□□□ 10.8
DDX55Q8NHQ9 RPL10-210ENST00000458500 585 ntTSL 1 (best)16.39■□□□□ 0.212e-17■□□□□ 10.8
DDX55Q8NHQ9 RPL10-203ENST00000406022 748 ntTSL 3 BASIC16.32■□□□□ 0.22e-17■□□□□ 10.8
DDX55Q8NHQ9 RPL10-215ENST00000489200 1519 ntTSL 215.64■□□□□ 0.092e-17■□□□□ 10.8
DDX55Q8NHQ9 RPL10-214ENST00000485196 839 ntTSL 214.83□□□□□ -0.042e-17■□□□□ 10.8
DDX55Q8NHQ9 RPL10-207ENST00000436473 657 ntTSL 214.07□□□□□ -0.162e-17■□□□□ 10.8
DDX55Q8NHQ9 RPL10-218ENST00000618723 2210 ntTSL 5 BASIC13.54□□□□□ -0.242e-17■□□□□ 10.8
DDX55Q8NHQ9 RPL10-211ENST00000467168 802 ntTSL 213.29□□□□□ -0.282e-17■□□□□ 10.8
DDX55Q8NHQ9 RPL10-216ENST00000491035 1369 ntTSL 512.96□□□□□ -0.332e-17■□□□□ 10.8
DDX55Q8NHQ9 RPL10-205ENST00000427682 457 ntTSL 512.8□□□□□ -0.362e-17■□□□□ 10.8
DDX55Q8NHQ9 RPL10-209ENST00000451365 713 ntTSL 1 (best)12.8□□□□□ -0.362e-17■□□□□ 10.8
DDX55Q8NHQ9 RPL10-204ENST00000424325 2318 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.412e-17■□□□□ 10.8
DDX55Q8NHQ9 RPL10-213ENST00000482732 1731 ntTSL 1 (best)12.45□□□□□ -0.422e-17■□□□□ 10.8
DDX55Q8NHQ9 RPL10-206ENST00000428169 292 ntTSL 511.98□□□□□ -0.492e-17■□□□□ 10.8
DDX55Q8NHQ9 RPL10-201ENST00000344746 2278 ntAPPRIS P1 TSL 1 (best)11.69□□□□□ -0.542e-17■□□□□ 10.8
DDX55Q8NHQ9 APOA2-206ENST00000469730 265 ntTSL 513.89□□□□□ -0.192e-89■□□□□ 10.8
DDX55Q8NHQ9 SNRPA-201ENST00000243563 1621 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.41e-7■□□□□ 10.8
DDX55Q8NHQ9 RPN2-206ENST00000456400 453 ntTSL 35.53□□□□□ -1.521e-26■□□□□ 10.8
DDX55Q8NHQ9 FDFT1-203ENST00000446331 1558 ntTSL 226.84■■□□□ 1.897e-19■□□□□ 10.8
DDX55Q8NHQ9 FDFT1-209ENST00000525900 1596 ntTSL 5 BASIC24.11■■□□□ 1.457e-19■□□□□ 10.8
DDX55Q8NHQ9 FDFT1-201ENST00000220584 2176 ntAPPRIS P1 TSL 1 (best) BASIC23.42■■□□□ 1.347e-19■□□□□ 10.8
DDX55Q8NHQ9 FDFT1-210ENST00000525954 1890 ntTSL 2 BASIC22.87■■□□□ 1.257e-19■□□□□ 10.8
DDX55Q8NHQ9 FDFT1-207ENST00000525607 1773 ntTSL 222.33■■□□□ 1.167e-19■□□□□ 10.8
DDX55Q8NHQ9 FDFT1-226ENST00000623368 2368 ntTSL 2 BASIC20.17■□□□□ 0.827e-19■□□□□ 10.8
DDX55Q8NHQ9 FDFT1-202ENST00000443614 1393 ntTSL 2 BASIC18.74■□□□□ 0.597e-19■□□□□ 10.8
DDX55Q8NHQ9 FDFT1-224ENST00000618539 2660 ntAPPRIS P1 TSL 5 BASIC16.87■□□□□ 0.297e-19■□□□□ 10.8
DDX55Q8NHQ9 FDFT1-223ENST00000615631 2462 ntAPPRIS P1 TSL 5 BASIC16.87■□□□□ 0.297e-19■□□□□ 10.8
DDX55Q8NHQ9 FDFT1-214ENST00000528812 2013 ntTSL 2 BASIC16.62■□□□□ 0.257e-19■□□□□ 10.8
DDX55Q8NHQ9 FDFT1-218ENST00000530664 1761 ntTSL 2 BASIC15.05■□□□□ -07e-19■□□□□ 10.8
DDX55Q8NHQ9 FDFT1-225ENST00000622850 1987 ntTSL 2 BASIC13.07□□□□□ -0.327e-19■□□□□ 10.8
DDX55Q8NHQ9 FDFT1-212ENST00000528643 1909 ntTSL 2 BASIC9.28□□□□□ -0.927e-19■□□□□ 10.8
DDX55Q8NHQ9 FDFT1-222ENST00000538689 2289 ntTSL 2 BASIC7.83□□□□□ -1.167e-19■□□□□ 10.8
DDX55Q8NHQ9 FGA-203ENST00000622532 1130 ntTSL 5 BASIC11.78□□□□□ -0.521e-20■□□□□ 10.8
DDX55Q8NHQ9 FGA-202ENST00000403106 2248 ntTSL 1 (best) BASIC9.73□□□□□ -0.851e-20■□□□□ 10.8
DDX55Q8NHQ9 FGA-201ENST00000302053 3678 ntAPPRIS P1 TSL 2 BASIC7.4□□□□□ -1.221e-20■□□□□ 10.8
DDX55Q8NHQ9 ACADVL-202ENST00000350303 2191 ntTSL 1 (best) BASIC22.56■■□□□ 1.25e-9■□□□□ 10.8
DDX55Q8NHQ9 ACADVL-220ENST00000579546 582 ntTSL 522.37■■□□□ 1.175e-9■□□□□ 10.8
DDX55Q8NHQ9 ACADVL-237ENST00000583858 1015 ntTSL 522.22■■□□□ 1.155e-9■□□□□ 10.8
DDX55Q8NHQ9 ACADVL-203ENST00000356839 2323 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.035e-9■□□□□ 10.8
DDX55Q8NHQ9 ACADVL-201ENST00000322910 2352 ntTSL 221.19■□□□□ 0.985e-9■□□□□ 10.8
DDX55Q8NHQ9 ACADVL-204ENST00000542255 1016 ntTSL 520.54■□□□□ 0.885e-9■□□□□ 10.8
DDX55Q8NHQ9 ACADVL-205ENST00000543245 2227 ntTSL 2 BASIC20.51■□□□□ 0.875e-9■□□□□ 10.8
DDX55Q8NHQ9 ACADVL-236ENST00000583850 903 ntTSL 220.51■□□□□ 0.875e-9■□□□□ 10.8
DDX55Q8NHQ9 ACADVL-219ENST00000579425 1234 ntTSL 518.59■□□□□ 0.575e-9■□□□□ 10.8
DDX55Q8NHQ9 ACADVL-214ENST00000578711 1732 nt18.29■□□□□ 0.525e-9■□□□□ 10.8
Retrieved 100 of 15,504 protein–RNA pairs in 87.5 ms