RNA–Protein interactions for RNA: ENST00000488214.1

PDAP1-203, Transcript of PDGFA associated protein 1, humanhuman

TSL 3

Gene PDAP1, Length 274 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDAP1-203ENST00000488214 NISCHQ9Y2I1 1504 aa15.99■□□□□ 0.15
PDAP1-203ENST00000488214 CCDC180Q9P1Z9 1646 aa14.12□□□□□ -0.15
PDAP1-203ENST00000488214 ZCCHC6Q5VYS8 1495 aaKnown RBP13.45□□□□□ -0.26
PDAP1-203ENST00000488214 ABCC9O60706 1549 aa13.33□□□□□ -0.28
PDAP1-203ENST00000488214 DCAF1Q9Y4B6 1507 aa13.23□□□□□ -0.29
PDAP1-203ENST00000488214 DCAF8L2P0C7V8 631 aa13.13□□□□□ -0.31
PDAP1-203ENST00000488214 MYO15BQ96JP2 1530 aa13.09□□□□□ -0.31
PDAP1-203ENST00000488214 NACADO15069 1562 aa13.07□□□□□ -0.32
PDAP1-203ENST00000488214 RB1CC1Q8TDY2 1594 aa13.02□□□□□ -0.33
PDAP1-203ENST00000488214 SHROOM4Q9ULL8 1493 aa12.97□□□□□ -0.33
PDAP1-203ENST00000488214 SCRIBQ14160 1630 aa12.95□□□□□ -0.34
PDAP1-203ENST00000488214 UNC13AQ9UPW8 1703 aa12.85□□□□□ -0.35
PDAP1-203ENST00000488214 BICRAQ9NZM4 1560 aa12.61□□□□□ -0.39
PDAP1-203ENST00000488214 PABPN1Q86U42 306 aaKnown RBP eCLIP12.46□□□□□ -0.41
PDAP1-203ENST00000488214 CECR2Q9BXF3 1484 aa12.41□□□□□ -0.42
PDAP1-203ENST00000488214 BAZ1AQ9NRL2 1556 aaPredicted RBP12.39□□□□□ -0.43
PDAP1-203ENST00000488214 SMARCA4P51532 1647 aa12.39□□□□□ -0.43
PDAP1-203ENST00000488214 MROH2BQ7Z745 1585 aa12.36□□□□□ -0.43
PDAP1-203ENST00000488214 SUPT5HO00267 1087 aaKnown RBP12.36□□□□□ -0.43
PDAP1-203ENST00000488214 RSF1Q96T23 1441 aaPredicted RBP12.32□□□□□ -0.44
PDAP1-203ENST00000488214 WIZO95785 1651 aa12.31□□□□□ -0.44
PDAP1-203ENST00000488214 EIF4G1Q04637 1599 aaKnown RBP12.25□□□□□ -0.45
PDAP1-203ENST00000488214 PEG3Q9GZU2 1588 aa12.19□□□□□ -0.46
PDAP1-203ENST00000488214 TOP2AP11388 1531 aaKnown RBP12.17□□□□□ -0.46
PDAP1-203ENST00000488214 SMARCA2P51531 1590 aa12.17□□□□□ -0.46
PDAP1-203ENST00000488214 ATAD2BQ9ULI0 1458 aa12.12□□□□□ -0.47
PDAP1-203ENST00000488214 CC2D2AQ9P2K1 1620 aa12.1□□□□□ -0.47
PDAP1-203ENST00000488214 BAZ1BQ9UIG0 1483 aaKnown RBP12.09□□□□□ -0.47
PDAP1-203ENST00000488214 HMGXB3Q12766 1538 aa12.08□□□□□ -0.48
PDAP1-203ENST00000488214 NCAPD3P42695 1498 aa11.99□□□□□ -0.49
PDAP1-203ENST00000488214 CCDC88BA6NC98 1476 aa11.96□□□□□ -0.49
PDAP1-203ENST00000488214 PRDM2Q13029 1718 aa11.88□□□□□ -0.51
PDAP1-203ENST00000488214 CHIC1Q5VXU3 224 aa11.81□□□□□ -0.52
PDAP1-203ENST00000488214 ABCC8Q09428 1581 aa11.76□□□□□ -0.53
PDAP1-203ENST00000488214 CFTRP13569 1480 aa11.73□□□□□ -0.53
PDAP1-203ENST00000488214 LAMC3Q9Y6N6 1575 aa11.7□□□□□ -0.54
PDAP1-203ENST00000488214 AEBP2Q6ZN18 517 aaPredicted RBP11.69□□□□□ -0.54
PDAP1-203ENST00000488214 DNAJC5BQ9UF47 199 aa11.69□□□□□ -0.54
PDAP1-203ENST00000488214 CADPSQ9ULU8 1353 aa11.67□□□□□ -0.54
PDAP1-203ENST00000488214 NESP48681 1621 aa11.67□□□□□ -0.54
PDAP1-203ENST00000488214 SYNJ1O43426 1573 aa11.67□□□□□ -0.54
PDAP1-203ENST00000488214 KIF21AQ7Z4S6 1674 aa11.65□□□□□ -0.55
PDAP1-203ENST00000488214 BIVM-ERCC5R4GMW8 1640 aa11.64□□□□□ -0.55
PDAP1-203ENST00000488214 WRNQ14191 1432 aaPredicted RBP eCLIP11.64□□□□□ -0.55
PDAP1-203ENST00000488214 TRIM41Q8WV44 630 aa11.62□□□□□ -0.55
PDAP1-203ENST00000488214 TOP2BQ02880 1626 aa11.61□□□□□ -0.55
PDAP1-203ENST00000488214 FANCD2Q9BXW9 1451 aa11.61□□□□□ -0.55
PDAP1-203ENST00000488214 CUX1P39880 1505 aa11.58□□□□□ -0.56
PDAP1-203ENST00000488214 CEP164Q9UPV0 1460 aa11.57□□□□□ -0.56
PDAP1-203ENST00000488214 DNMBPQ6XZF7 1577 aa11.54□□□□□ -0.56
PDAP1-203ENST00000488214 PDS5BQ9NTI5 1447 aa11.53□□□□□ -0.56
PDAP1-203ENST00000488214 TOPBP1Q92547 1522 aa11.49□□□□□ -0.57
PDAP1-203ENST00000488214 URB2Q14146 1524 aaKnown RBP11.48□□□□□ -0.57
PDAP1-203ENST00000488214 FGD5Q6ZNL6 1462 aa11.47□□□□□ -0.57
PDAP1-203ENST00000488214 ERCC6Q03468 1493 aa11.46□□□□□ -0.57
PDAP1-203ENST00000488214 THOC2Q8NI27 1593 aaKnown RBP11.45□□□□□ -0.58
PDAP1-203ENST00000488214 MRC2Q9UBG0 1479 aa11.45□□□□□ -0.58
PDAP1-203ENST00000488214 WDR97A6NE52 1622 aa11.45□□□□□ -0.58
PDAP1-203ENST00000488214 SOGA1O94964 1423 aa11.43□□□□□ -0.58
PDAP1-203ENST00000488214 WDR62O43379 1518 aa11.42□□□□□ -0.58
PDAP1-203ENST00000488214 FAM9AQ8IZU1 332 aaPredicted RBP11.42□□□□□ -0.58
PDAP1-203ENST00000488214 POLA1P09884 1462 aaPredicted RBP11.42□□□□□ -0.58
PDAP1-203ENST00000488214 EEA1Q15075 1411 aa11.41□□□□□ -0.58
PDAP1-203ENST00000488214 RUSC2Q8N2Y8 1516 aa11.4□□□□□ -0.58
PDAP1-203ENST00000488214 CUX2O14529 1486 aa11.36□□□□□ -0.59
PDAP1-203ENST00000488214 RAD54L2Q9Y4B4 1467 aa11.36□□□□□ -0.59
PDAP1-203ENST00000488214 KIF21BO75037 1637 aa11.35□□□□□ -0.59
PDAP1-203ENST00000488214 TARBP1Q13395 1621 aaKnown RBP11.35□□□□□ -0.59
PDAP1-203ENST00000488214 ABCA10Q8WWZ4 1543 aa11.35□□□□□ -0.59
PDAP1-203ENST00000488214 KIF27Q86VH2 1401 aa11.35□□□□□ -0.59
PDAP1-203ENST00000488214 ABCA5Q8WWZ7 1642 aa11.34□□□□□ -0.59
PDAP1-203ENST00000488214 PBRM1Q86U86 1689 aa11.33□□□□□ -0.6
PDAP1-203ENST00000488214 GOLGA3Q08378 1498 aa11.3□□□□□ -0.6
PDAP1-203ENST00000488214 EHMT2Q96KQ7 1210 aa11.29□□□□□ -0.6
PDAP1-203ENST00000488214 CUL7Q14999 1698 aa11.29□□□□□ -0.6
PDAP1-203ENST00000488214 IFT140Q96RY7 1462 aa11.28□□□□□ -0.6
PDAP1-203ENST00000488214 EIF4G3O43432 1585 aaKnown RBP11.28□□□□□ -0.6
PDAP1-203ENST00000488214 ERICH3Q5RHP9 1530 aa11.27□□□□□ -0.61
PDAP1-203ENST00000488214 LOC105371045A0A1W2PR82 267 aa11.27□□□□□ -0.61
PDAP1-203ENST00000488214 CSRNP3Q8WYN3 585 aa11.26□□□□□ -0.61
PDAP1-203ENST00000488214 GAPVD1Q14C86 1478 aa11.24□□□□□ -0.61
PDAP1-203ENST00000488214 RAPGEF2Q9Y4G8 1499 aa11.24□□□□□ -0.61
PDAP1-203ENST00000488214 PRXQ9BXM0 1461 aa11.23□□□□□ -0.61
PDAP1-203ENST00000488214 CTTNBP2Q8WZ74 1663 aa11.21□□□□□ -0.61
PDAP1-203ENST00000488214 ADAMTS12P58397 1594 aa11.21□□□□□ -0.61
PDAP1-203ENST00000488214 ZNF608Q9ULD9 1512 aaPredicted RBP11.21□□□□□ -0.61
PDAP1-203ENST00000488214 TDRD9Q8NDG6 1382 aaKnown RBP11.21□□□□□ -0.61
PDAP1-203ENST00000488214 AQRO60306 1485 aaKnown RBP eCLIP11.18□□□□□ -0.625e-8■■■■■ 29.3
PDAP1-203ENST00000488214 IGF1RP08069 1367 aa11.17□□□□□ -0.62
PDAP1-203ENST00000488214 GRIN2BQ13224 1484 aa11.17□□□□□ -0.62
PDAP1-203ENST00000488214 CARMIL1Q5VZK9 1371 aa11.16□□□□□ -0.62
PDAP1-203ENST00000488214 TNIKQ9UKE5 1360 aa11.16□□□□□ -0.62
PDAP1-203ENST00000488214 UBTFP17480 764 aaKnown RBP11.15□□□□□ -0.62
PDAP1-203ENST00000488214 CEP162Q5TB80 1403 aa11.15□□□□□ -0.62
PDAP1-203ENST00000488214 SNAPC4Q5SXM2 1469 aa11.14□□□□□ -0.63
PDAP1-203ENST00000488214 FHAD1B1AJZ9 1412 aa11.1□□□□□ -0.63
PDAP1-203ENST00000488214 MAGI1Q96QZ7 1491 aaPredicted RBP11.1□□□□□ -0.63
PDAP1-203ENST00000488214 CHD1O14646 1710 aa11.09□□□□□ -0.63
PDAP1-203ENST00000488214 CLIP1P30622 1438 aa11.08□□□□□ -0.64
PDAP1-203ENST00000488214 SYNJ2O15056 1496 aa11.05□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms