RNA–Protein interactions for RNA: ENST00000426447.3

PDAP1-202, Transcript of PDGFA associated protein 1, humanhuman

TSL 5

Gene PDAP1, Length 767 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDAP1-202ENST00000426447 NISCHQ9Y2I1 1504 aa36.99■■■■□ 3.51
PDAP1-202ENST00000426447 ABCC9O60706 1549 aa33.8■■■■□ 3
PDAP1-202ENST00000426447 CCDC180Q9P1Z9 1646 aa33.25■■■□□ 2.91
PDAP1-202ENST00000426447 DNAJC5BQ9UF47 199 aa32.08■■■□□ 2.73
PDAP1-202ENST00000426447 RB1CC1Q8TDY2 1594 aa31.94■■■□□ 2.7
PDAP1-202ENST00000426447 DCAF8L2P0C7V8 631 aa31.67■■■□□ 2.66
PDAP1-202ENST00000426447 NACADO15069 1562 aa31.61■■■□□ 2.65
PDAP1-202ENST00000426447 PABPN1Q86U42 306 aaKnown RBP eCLIP31.5■■■□□ 2.63
PDAP1-202ENST00000426447 UNC13AQ9UPW8 1703 aa31.07■■■□□ 2.56
PDAP1-202ENST00000426447 MYO15BQ96JP2 1530 aa31.01■■■□□ 2.55
PDAP1-202ENST00000426447 BICRAQ9NZM4 1560 aa30.96■■■□□ 2.55
PDAP1-202ENST00000426447 ZCCHC6Q5VYS8 1495 aaKnown RBP30.53■■■□□ 2.48
PDAP1-202ENST00000426447 SHROOM4Q9ULL8 1493 aa30.5■■■□□ 2.47
PDAP1-202ENST00000426447 CECR2Q9BXF3 1484 aa30.48■■■□□ 2.47
PDAP1-202ENST00000426447 DCAF1Q9Y4B6 1507 aa30.47■■■□□ 2.47
PDAP1-202ENST00000426447 CC2D2AQ9P2K1 1620 aa30.44■■■□□ 2.46
PDAP1-202ENST00000426447 SCRIBQ14160 1630 aa30.37■■■□□ 2.45
PDAP1-202ENST00000426447 EIF4G1Q04637 1599 aaKnown RBP30.27■■■□□ 2.44
PDAP1-202ENST00000426447 DNAJC5Q9H3Z4 198 aa29.77■■■□□ 2.36
PDAP1-202ENST00000426447 ERCC6Q03468 1493 aa29.24■■■□□ 2.27
PDAP1-202ENST00000426447 CUX2O14529 1486 aa29.23■■■□□ 2.27
PDAP1-202ENST00000426447 NCAPD3P42695 1498 aa29.23■■■□□ 2.27
PDAP1-202ENST00000426447 ATAD2BQ9ULI0 1458 aa29.08■■■□□ 2.25
PDAP1-202ENST00000426447 SMARCA2P51531 1590 aa28.96■■■□□ 2.23
PDAP1-202ENST00000426447 HMGXB3Q12766 1538 aa28.9■■■□□ 2.22
PDAP1-202ENST00000426447 NESP48681 1621 aa28.89■■■□□ 2.22
PDAP1-202ENST00000426447 SMARCA4P51532 1647 aa28.89■■■□□ 2.22
PDAP1-202ENST00000426447 BAZ1BQ9UIG0 1483 aaKnown RBP28.8■■■□□ 2.2
PDAP1-202ENST00000426447 BAZ1AQ9NRL2 1556 aaPredicted RBP28.74■■■□□ 2.19
PDAP1-202ENST00000426447 LAMC3Q9Y6N6 1575 aa28.59■■■□□ 2.17
PDAP1-202ENST00000426447 PEG3Q9GZU2 1588 aa28.58■■■□□ 2.17
PDAP1-202ENST00000426447 THOC2Q8NI27 1593 aaKnown RBP28.57■■■□□ 2.16
PDAP1-202ENST00000426447 PDS5BQ9NTI5 1447 aa28.53■■■□□ 2.16
PDAP1-202ENST00000426447 MROH2BQ7Z745 1585 aa28.5■■■□□ 2.15
PDAP1-202ENST00000426447 KIF21AQ7Z4S6 1674 aa28.42■■■□□ 2.14
PDAP1-202ENST00000426447 TRIM41Q8WV44 630 aa28.39■■■□□ 2.14
PDAP1-202ENST00000426447 CADPSQ9ULU8 1353 aa28.37■■■□□ 2.13
PDAP1-202ENST00000426447 MRC2Q9UBG0 1479 aa28.25■■■□□ 2.11
PDAP1-202ENST00000426447 WDR62O43379 1518 aa28.13■■■□□ 2.09
PDAP1-202ENST00000426447 WIZO95785 1651 aa28.12■■■□□ 2.09
PDAP1-202ENST00000426447 CEP164Q9UPV0 1460 aa28.08■■■□□ 2.09
PDAP1-202ENST00000426447 FANCD2Q9BXW9 1451 aa28.02■■■□□ 2.08
PDAP1-202ENST00000426447 OSCARQ8IYS5 282 aa27.99■■■□□ 2.07
PDAP1-202ENST00000426447 CFTRP13569 1480 aa27.91■■■□□ 2.06
PDAP1-202ENST00000426447 RSF1Q96T23 1441 aaPredicted RBP27.8■■■□□ 2.04
PDAP1-202ENST00000426447 URB2Q14146 1524 aaKnown RBP27.77■■■□□ 2.04
PDAP1-202ENST00000426447 TOP2AP11388 1531 aaKnown RBP27.73■■■□□ 2.03
PDAP1-202ENST00000426447 IFT140Q96RY7 1462 aa27.53■■■□□ 2
PDAP1-202ENST00000426447 ZNF608Q9ULD9 1512 aaPredicted RBP27.51■■■□□ 2
PDAP1-202ENST00000426447 RIMBP3CA6NJZ7 1639 aa27.49■■□□□ 1.99
PDAP1-202ENST00000426447 RIMBP3BA6NNM3 1639 aa27.49■■□□□ 1.99
PDAP1-202ENST00000426447 RIMBP3Q9UFD9 1639 aa27.49■■□□□ 1.99
PDAP1-202ENST00000426447 CCDC88BA6NC98 1476 aa27.49■■□□□ 1.99
PDAP1-202ENST00000426447 PRDM2Q13029 1718 aa27.44■■□□□ 1.98
PDAP1-202ENST00000426447 TOPBP1Q92547 1522 aa27.41■■□□□ 1.98
PDAP1-202ENST00000426447 ARHGEF11O15085 1522 aa27.4■■□□□ 1.98
PDAP1-202ENST00000426447 CYB5RLQ6IPT4 315 aa27.39■■□□□ 1.98
PDAP1-202ENST00000426447 ABCC8Q09428 1581 aa27.37■■□□□ 1.97
PDAP1-202ENST00000426447 FBLN2P98095 1184 aa27.31■■□□□ 1.96
PDAP1-202ENST00000426447 EIF4G3O43432 1585 aaKnown RBP27.28■■□□□ 1.96
PDAP1-202ENST00000426447 AQRO60306 1485 aaKnown RBP eCLIP27.27■■□□□ 1.961e-7■■■■■ 32.7
PDAP1-202ENST00000426447 TRHP20396 242 aaPredicted RBP27.26■■□□□ 1.95
PDAP1-202ENST00000426447 DNMBPQ6XZF7 1577 aa27.26■■□□□ 1.95
PDAP1-202ENST00000426447 TARBP1Q13395 1621 aaKnown RBP27.14■■□□□ 1.94
PDAP1-202ENST00000426447 CHD1O14646 1710 aa27.13■■□□□ 1.93
PDAP1-202ENST00000426447 POLA1P09884 1462 aaPredicted RBP27.11■■□□□ 1.93
PDAP1-202ENST00000426447 ARAP1Q96P48 1450 aa27.09■■□□□ 1.93
PDAP1-202ENST00000426447 TDRD9Q8NDG6 1382 aaKnown RBP27.08■■□□□ 1.93
PDAP1-202ENST00000426447 SOGA1O94964 1423 aa27.07■■□□□ 1.92
PDAP1-202ENST00000426447 RAD54L2Q9Y4B4 1467 aa27.06■■□□□ 1.92
PDAP1-202ENST00000426447 CHMP7Q8WUX9 453 aaPredicted RBP27.01■■□□□ 1.91
PDAP1-202ENST00000426447 SNAPC4Q5SXM2 1469 aa26.93■■□□□ 1.9
PDAP1-202ENST00000426447 FGD5Q6ZNL6 1462 aa26.9■■□□□ 1.9
PDAP1-202ENST00000426447 SYNJ1O43426 1573 aa26.84■■□□□ 1.89
PDAP1-202ENST00000426447 GRIN2BQ13224 1484 aa26.83■■□□□ 1.89
PDAP1-202ENST00000426447 MAGI1Q96QZ7 1491 aaPredicted RBP26.83■■□□□ 1.89
PDAP1-202ENST00000426447 WDR97A6NE52 1622 aa26.83■■□□□ 1.88
PDAP1-202ENST00000426447 CLASP1Q7Z460 1538 aa26.82■■□□□ 1.88
PDAP1-202ENST00000426447 CUX1P39880 1505 aa26.78■■□□□ 1.88
PDAP1-202ENST00000426447 SYNJ2O15056 1496 aa26.77■■□□□ 1.88
PDAP1-202ENST00000426447 AEBP2Q6ZN18 517 aaPredicted RBP26.77■■□□□ 1.88
PDAP1-202ENST00000426447 GAPVD1Q14C86 1478 aa26.68■■□□□ 1.86
PDAP1-202ENST00000426447 PBRM1Q86U86 1689 aa26.57■■□□□ 1.84
PDAP1-202ENST00000426447 ABCA10Q8WWZ4 1543 aa26.55■■□□□ 1.84
PDAP1-202ENST00000426447 ABCA5Q8WWZ7 1642 aa26.48■■□□□ 1.83
PDAP1-202ENST00000426447 SUPT5HO00267 1087 aaKnown RBP26.47■■□□□ 1.83
PDAP1-202ENST00000426447 GRIN2AQ12879 1464 aa26.46■■□□□ 1.83
PDAP1-202ENST00000426447 WRNQ14191 1432 aaPredicted RBP eCLIP26.45■■□□□ 1.82
PDAP1-202ENST00000426447 ERCC6L2Q5T890 1561 aa26.41■■□□□ 1.82
PDAP1-202ENST00000426447 NUP160Q12769 1436 aa26.36■■□□□ 1.81
PDAP1-202ENST00000426447 CEP170Q5SW79 1584 aa26.35■■□□□ 1.81
PDAP1-202ENST00000426447 FHAD1B1AJZ9 1412 aa26.34■■□□□ 1.81
PDAP1-202ENST00000426447 ADAMTS12P58397 1594 aa26.33■■□□□ 1.8
PDAP1-202ENST00000426447 JPH4Q96JJ6 628 aa26.24■■□□□ 1.79
PDAP1-202ENST00000426447 TOP2BQ02880 1626 aa26.24■■□□□ 1.79
PDAP1-202ENST00000426447 PRG4Q92954 1404 aaPredicted RBP26.22■■□□□ 1.79
PDAP1-202ENST00000426447 SHROOM2Q13796 1616 aa26.22■■□□□ 1.79
PDAP1-202ENST00000426447 ERICH3Q5RHP9 1530 aa26.21■■□□□ 1.79
PDAP1-202ENST00000426447 BIVM-ERCC5R4GMW8 1640 aa26.2■■□□□ 1.78
PDAP1-202ENST00000426447 NPM1P06748 294 aaKnown RBP eCLIP26.18■■□□□ 1.78
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms