Protein–RNA interactions for Protein: Q71RC2

LARP4, La-related protein 4, humanhuman

Known RBP eCLIP

Length 724 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LARP4Q71RC2 CTCFL-217ENST00000608425 2915 ntTSL 1 (best) BASIC11.61□□□□□ -0.551e-7■■□□□ 12.6
LARP4Q71RC2 PUM2-204ENST00000403432 3594 ntAPPRIS P1 TSL 2 BASIC11.54□□□□□ -0.561e-7■■□□□ 12.6
LARP4Q71RC2 ARID4B-212ENST00000491632 3823 ntTSL 1 (best)11.39□□□□□ -0.591e-7■■□□□ 12.6
LARP4Q71RC2 CDK5RAP2-201ENST00000349780 6228 ntAPPRIS P3 TSL 1 (best) BASIC11.27□□□□□ -0.61e-7■■□□□ 12.6
LARP4Q71RC2 CTCFL-221ENST00000608903 2135 ntTSL 1 (best) BASIC11.11□□□□□ -0.631e-7■■□□□ 12.6
LARP4Q71RC2 EIF3I-202ENST00000373586 1458 ntAPPRIS P1 TSL 1 (best) BASIC11□□□□□ -0.651e-7■■□□□ 12.6
LARP4Q71RC2 CTCFL-212ENST00000539382 2262 ntTSL 1 (best) BASIC10.86□□□□□ -0.671e-7■■□□□ 12.6
LARP4Q71RC2 CTCFL-201ENST00000243914 3567 ntAPPRIS P3 TSL 1 (best) BASIC10.83□□□□□ -0.681e-7■■□□□ 12.6
LARP4Q71RC2 CDK5RAP2-217ENST00000484546 1269 ntTSL 1 (best)10.8□□□□□ -0.681e-7■■□□□ 12.6
LARP4Q71RC2 CTCFL-207ENST00000429804 3864 ntTSL 1 (best) BASIC10.8□□□□□ -0.681e-7■■□□□ 12.6
LARP4Q71RC2 CTCFL-214ENST00000608108 1628 ntTSL 1 (best)10.65□□□□□ -0.71e-7■■□□□ 12.6
LARP4Q71RC2 SREK1-202ENST00000334121 6781 ntAPPRIS P1 TSL 2 BASIC10.63□□□□□ -0.711e-7■■□□□ 12.6
LARP4Q71RC2 CTCFL-206ENST00000426658 3996 ntTSL 1 (best)10.18□□□□□ -0.781e-7■■□□□ 12.6
LARP4Q71RC2 CTCFL-216ENST00000608263 4040 ntAPPRIS P3 TSL 1 (best) BASIC10.17□□□□□ -0.781e-7■■□□□ 12.6
LARP4Q71RC2 EIF3I-203ENST00000471486 825 ntTSL 29.92□□□□□ -0.821e-7■■□□□ 12.6
LARP4Q71RC2 EIF3I-206ENST00000489353 527 ntTSL 39.78□□□□□ -0.841e-7■■□□□ 12.6
LARP4Q71RC2 CDK5RAP2-205ENST00000425647 2747 ntTSL 29.62□□□□□ -0.871e-7■■□□□ 12.6
LARP4Q71RC2 CDK5RAP2-213ENST00000480467 931 ntTSL 39.61□□□□□ -0.871e-7■■□□□ 12.6
LARP4Q71RC2 CDK5RAP2-206ENST00000433194 815 ntTSL 39.57□□□□□ -0.881e-7■■□□□ 12.6
LARP4Q71RC2 CDK5RAP2-219ENST00000495406 635 ntTSL 29.54□□□□□ -0.881e-7■■□□□ 12.6
LARP4Q71RC2 CTCFL-222ENST00000609232 3668 ntAPPRIS P3 TSL 1 (best) BASIC9.43□□□□□ -0.91e-7■■□□□ 12.6
LARP4Q71RC2 CDK5RAP2-203ENST00000360822 5551 ntAPPRIS ALT2 TSL 5 BASIC9.26□□□□□ -0.931e-7■■□□□ 12.6
LARP4Q71RC2 AC078814.1-201ENST00000484568 645 ntBASIC9.25□□□□□ -0.931e-7■■□□□ 12.6
LARP4Q71RC2 CDK5RAP2-210ENST00000474262 549 ntTSL 28.21□□□□□ -1.11e-7■■□□□ 12.6
LARP4Q71RC2 PUM2-210ENST00000442400 955 ntTSL 58.19□□□□□ -1.11e-7■■□□□ 12.6
LARP4Q71RC2 CTCFL-220ENST00000608858 905 ntTSL 1 (best)8.18□□□□□ -1.11e-7■■□□□ 12.6
LARP4Q71RC2 BTK-210ENST00000621635 2767 ntTSL 1 (best) BASIC8.15□□□□□ -1.111e-7■■□□□ 12.6
LARP4Q71RC2 CDK5RAP2-204ENST00000416449 3902 ntTSL 58.09□□□□□ -1.111e-7■■□□□ 12.6
LARP4Q71RC2 BTK-201ENST00000308731 2579 ntAPPRIS P1 TSL 1 (best) BASIC8.01□□□□□ -1.131e-7■■□□□ 12.6
LARP4Q71RC2 CDK5RAP2-209ENST00000473282 5956 ntTSL 1 (best)7.85□□□□□ -1.151e-7■■□□□ 12.6
LARP4Q71RC2 MPP1-213ENST00000482757 989 ntTSL 27.85□□□□□ -1.151e-7■■□□□ 12.6
LARP4Q71RC2 BTK-202ENST00000372880 2248 ntTSL 2 BASIC7.82□□□□□ -1.161e-7■■□□□ 12.6
LARP4Q71RC2 FLJ46284-202ENST00000521148 496 ntTSL 3 BASIC7.69□□□□□ -1.181e-7■■□□□ 12.6
LARP4Q71RC2 AHSA2-203ENST00000410073 479 ntTSL 5 BASIC6.93□□□□□ -1.36e-7■■□□□ 12.6
LARP4Q71RC2 EIF3I-204ENST00000474371 643 ntTSL 36.82□□□□□ -1.321e-7■■□□□ 12.6
LARP4Q71RC2 AHSA2-211ENST00000493628 633 ntTSL 36.42□□□□□ -1.386e-7■■□□□ 12.6
LARP4Q71RC2 BTK-209ENST00000618050 2417 ntTSL 5 BASIC6.38□□□□□ -1.391e-7■■□□□ 12.6
LARP4Q71RC2 ARID4B-209ENST00000471257 4195 ntTSL 56.27□□□□□ -1.411e-7■■□□□ 12.6
LARP4Q71RC2 MPP1-216ENST00000491955 2378 ntTSL 25.84□□□□□ -1.481e-7■■□□□ 12.6
LARP4Q71RC2 AHSA2-206ENST00000484217 1741 ntTSL 55.81□□□□□ -1.486e-7■■□□□ 12.6
LARP4Q71RC2 SREK1-203ENST00000380918 2433 ntTSL 1 (best) BASIC5.77□□□□□ -1.491e-7■■□□□ 12.6
LARP4Q71RC2 PUM2-208ENST00000432105 584 ntTSL 55.64□□□□□ -1.511e-7■■□□□ 12.6
LARP4Q71RC2 AHSA2-209ENST00000491217 423 ntTSL 35.02□□□□□ -1.616e-7■■□□□ 12.6
LARP4Q71RC2 PRRC2C-211ENST00000495585 5566 ntTSL 1 (best)4.87□□□□□ -1.633e-7■■□□□ 12.6
LARP4Q71RC2 PUM2-205ENST00000420234 562 ntTSL 54.36□□□□□ -1.711e-7■■□□□ 12.6
LARP4Q71RC2 SREK1-201ENST00000284041 3751 ntTSL 1 (best)4.19□□□□□ -1.741e-7■■□□□ 12.6
LARP4Q71RC2 SREK1-208ENST00000520580 2369 ntTSL 24.06□□□□□ -1.761e-7■■□□□ 12.6
LARP4Q71RC2 SREK1-206ENST00000519259 9353 ntTSL 23.6□□□□□ -1.831e-7■■□□□ 12.6
LARP4Q71RC2 RPS9-207ENST00000441429 1600 ntTSL 1 (best) BASIC15.5■□□□□ 0.073e-8■■□□□ 12.6
LARP4Q71RC2 RPS9-204ENST00000391753 709 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.353e-8■■□□□ 12.6
LARP4Q71RC2 FOXP4-203ENST00000373060 5948 ntTSL 5 BASIC21.55■■□□□ 1.041e-7■■□□□ 12.6
LARP4Q71RC2 FOXP4-204ENST00000373063 5910 ntTSL 1 (best) BASIC21.55■■□□□ 1.041e-7■■□□□ 12.6
LARP4Q71RC2 PAFAH1B3-201ENST00000262890 1003 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.225e-6■■□□□ 12.5
LARP4Q71RC2 C19orf70-205ENST00000590075 773 ntTSL 216.1■□□□□ 0.175e-6■■□□□ 12.5
LARP4Q71RC2 C19orf70-206ENST00000590389 769 ntTSL 3 BASIC15.39■□□□□ 0.055e-6■■□□□ 12.5
LARP4Q71RC2 PAFAH1B3-202ENST00000538771 1098 ntAPPRIS P1 TSL 2 BASIC13.78□□□□□ -0.25e-6■■□□□ 12.5
LARP4Q71RC2 C19orf70-203ENST00000587589 577 ntTSL 5 BASIC12.2□□□□□ -0.465e-6■■□□□ 12.5
LARP4Q71RC2 PAFAH1B3-203ENST00000594989 649 ntTSL 511.03□□□□□ -0.645e-6■■□□□ 12.5
LARP4Q71RC2 CKAP5-202ENST00000354558 6428 ntTSL 1 (best) BASIC4.94□□□□□ -1.628e-8■■□□□ 12.5
LARP4Q71RC2 CKAP5-210ENST00000529230 7121 ntAPPRIS P1 TSL 5 BASIC4.89□□□□□ -1.638e-8■■□□□ 12.5
LARP4Q71RC2 CKAP5-201ENST00000312055 6532 ntTSL 5 BASIC3.61□□□□□ -1.838e-8■■□□□ 12.5
LARP4Q71RC2 RPL28-205ENST00000558131 444 ntTSL 5 BASIC14.79□□□□□ -0.047e-49■■□□□ 12.5
LARP4Q71RC2 RPL28-206ENST00000558752 671 ntTSL 3 BASIC13.87□□□□□ -0.197e-49■■□□□ 12.5
LARP4Q71RC2 RPL28-202ENST00000426763 5620 ntTSL 1 (best)13.21□□□□□ -0.297e-49■■□□□ 12.5
LARP4Q71RC2 EXT2-202ENST00000358681 2997 ntTSL 1 (best) BASIC17.07■□□□□ 0.322e-8■■□□□ 12.5
LARP4Q71RC2 EXT2-210ENST00000533608 3136 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.182e-8■■□□□ 12.5
LARP4Q71RC2 EXT2-201ENST00000343631 3424 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.52e-8■■□□□ 12.5
LARP4Q71RC2 EXT2-203ENST00000395673 3454 ntTSL 1 (best) BASIC9.78□□□□□ -0.842e-8■■□□□ 12.5
LARP4Q71RC2 EXT2-206ENST00000528159 521 ntTSL 38.65□□□□□ -1.022e-8■■□□□ 12.5
LARP4Q71RC2 SRSF9-201ENST00000229390 1201 ntAPPRIS P1 TSL 1 (best) BASIC24.11■■□□□ 1.451e-7■■□□□ 12.5
LARP4Q71RC2 SRSF9-206ENST00000603963 1043 ntTSL 519.83■□□□□ 0.771e-7■■□□□ 12.5
LARP4Q71RC2 GPC3-202ENST00000394299 2379 ntTSL 1 (best) BASIC14.94□□□□□ -0.021e-323■■□□□ 12.5
LARP4Q71RC2 GPC3-201ENST00000370818 2568 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.391e-323■■□□□ 12.5
LARP4Q71RC2 ZNF444-211ENST00000592949 1906 ntAPPRIS ALT2 TSL 1 (best) BASIC22.63■■□□□ 1.215e-7■■□□□ 12.5
LARP4Q71RC2 ZNF444-201ENST00000337080 2042 ntAPPRIS P3 TSL 1 (best) BASIC21.84■■□□□ 1.095e-7■■□□□ 12.5
LARP4Q71RC2 ZNF444-204ENST00000587236 5565 ntTSL 215.17■□□□□ 0.025e-7■■□□□ 12.5
LARP4Q71RC2 SLIRP-201ENST00000238688 394 ntAPPRIS P3 TSL 2 BASIC12.85□□□□□ -0.352e-8■■□□□ 12.5
LARP4Q71RC2 SLIRP-210ENST00000557431 725 ntTSL 2 BASIC12.71□□□□□ -0.372e-8■■□□□ 12.5
LARP4Q71RC2 SLIRP-209ENST00000557342 408 ntTSL 1 (best) BASIC11.47□□□□□ -0.572e-8■■□□□ 12.5
LARP4Q71RC2 SLIRP-211ENST00000557623 865 ntTSL 2 BASIC11.47□□□□□ -0.572e-8■■□□□ 12.5
LARP4Q71RC2 SLIRP-212ENST00000613856 420 ntAPPRIS ALT1 TSL 2 BASIC10.96□□□□□ -0.652e-8■■□□□ 12.5
LARP4Q71RC2 SLIRP-206ENST00000556375 408 ntTSL 210.55□□□□□ -0.722e-8■■□□□ 12.5
LARP4Q71RC2 SLIRP-205ENST00000556310 626 ntTSL 210.55□□□□□ -0.722e-8■■□□□ 12.5
LARP4Q71RC2 SLIRP-204ENST00000555890 471 ntTSL 26.61□□□□□ -1.352e-8■■□□□ 12.5
LARP4Q71RC2 SLIRP-202ENST00000553981 285 ntTSL 33.77□□□□□ -1.812e-8■■□□□ 12.5
LARP4Q71RC2 MAD2L2-205ENST00000376669 864 ntTSL 3 BASIC24.27■■□□□ 1.489e-8■■□□□ 12.5
LARP4Q71RC2 SPATS2L-204ENST00000409140 2463 ntAPPRIS P1 TSL 2 BASIC20.33■□□□□ 0.842e-17■■□□□ 12.5
LARP4Q71RC2 SPATS2L-202ENST00000360760 2119 ntTSL 1 (best) BASIC16.46■□□□□ 0.232e-17■■□□□ 12.5
LARP4Q71RC2 SPATS2L-209ENST00000409988 2698 ntAPPRIS P1 TSL 2 BASIC14.76□□□□□ -0.052e-17■■□□□ 12.5
LARP4Q71RC2 SPATS2L-208ENST00000409718 2648 ntAPPRIS P1 TSL 2 BASIC12.35□□□□□ -0.432e-17■■□□□ 12.5
LARP4Q71RC2 SPATS2L-206ENST00000409385 2320 ntTSL 2 BASIC10.47□□□□□ -0.732e-17■■□□□ 12.5
LARP4Q71RC2 SPATS2L-201ENST00000358677 6156 ntAPPRIS P1 TSL 1 (best) BASIC8.16□□□□□ -1.12e-17■■□□□ 12.5
LARP4Q71RC2 SPATS2L-227ENST00000619961 6115 ntTSL 2 BASIC7.99□□□□□ -1.132e-17■■□□□ 12.5
LARP4Q71RC2 C4orf3-202ENST00000504110 667 ntAPPRIS P3 TSL 1 (best) BASIC14.89□□□□□ -0.032e-10■■□□□ 12.5
LARP4Q71RC2 GTPBP6-201ENST00000326153 1907 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.999e-7■■□□□ 12.5
LARP4Q71RC2 GTPBP6-202ENST00000485332 2016 ntTSL 218.5■□□□□ 0.559e-7■■□□□ 12.5
LARP4Q71RC2 TBCB-211ENST00000589996 724 ntTSL 3 BASIC14.9□□□□□ -0.027e-11■■□□□ 12.5
LARP4Q71RC2 RPL23-207ENST00000577407 615 ntTSL 2 BASIC11.15□□□□□ -0.622e-47■■□□□ 12.5
LARP4Q71RC2 RPL23-203ENST00000394332 625 ntAPPRIS P1 TSL 5 BASIC11.15□□□□□ -0.622e-47■■□□□ 12.5
LARP4Q71RC2 RPL23-204ENST00000394333 444 ntTSL 2 BASIC10.64□□□□□ -0.712e-47■■□□□ 12.5
Retrieved 100 of 15,922 protein–RNA pairs in 185.9 ms