RNA–Protein interactions for RNA: ENST00000555890.5

SLIRP-204, Transcript of SRA stem-loop interacting RNA binding protein, humanhuman

TSL 2

Gene SLIRP, Length 471 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SLIRP-204ENST00000555890 AEBP2Q6ZN18 517 aaPredicted RBP20■□□□□ 0.79
SLIRP-204ENST00000555890 CHIC1Q5VXU3 224 aa18.86■□□□□ 0.61
SLIRP-204ENST00000555890 SENP3Q9H4L4 574 aaPredicted RBP17.32■□□□□ 0.36
SLIRP-204ENST00000555890 PHF23Q9BUL5 403 aaPredicted RBP16.95■□□□□ 0.3
SLIRP-204ENST00000555890 DNAJC5Q9H3Z4 198 aa16.56■□□□□ 0.24
SLIRP-204ENST00000555890 DNAJC5BQ9UF47 199 aa16.52■□□□□ 0.24
SLIRP-204ENST00000555890 FOXD1Q16676 465 aa16.13■□□□□ 0.17
SLIRP-204ENST00000555890 POTEDQ86YR6 584 aa16.13■□□□□ 0.17
SLIRP-204ENST00000555890 ABCC9O60706 1549 aa15.83■□□□□ 0.12
SLIRP-204ENST00000555890 NISCHQ9Y2I1 1504 aa15.7■□□□□ 0.1
SLIRP-204ENST00000555890 MSH5O43196 834 aa15.48■□□□□ 0.07
SLIRP-204ENST00000555890 TRIM41Q8WV44 630 aa15.06■□□□□ 0
SLIRP-204ENST00000555890 PIAS4Q8N2W9 510 aaPredicted RBP14.98□□□□□ -0.01
SLIRP-204ENST00000555890 PLPPR3Q6T4P5 718 aa14.74□□□□□ -0.05
SLIRP-204ENST00000555890 PABPN1Q86U42 306 aaKnown RBP eCLIP14.53□□□□□ -0.08
SLIRP-204ENST00000555890 ILDR1Q86SU0 546 aaPredicted RBP14.52□□□□□ -0.09
SLIRP-204ENST00000555890 PPP6R1Q9UPN7 881 aa14.52□□□□□ -0.09
SLIRP-204ENST00000555890 CECR2Q9BXF3 1484 aa14.47□□□□□ -0.09
SLIRP-204ENST00000555890 ADRA2BP18089 450 aa14.47□□□□□ -0.09
SLIRP-204ENST00000555890 CUX2O14529 1486 aa14.41□□□□□ -0.1
SLIRP-204ENST00000555890 CCDC180Q9P1Z9 1646 aa14.26□□□□□ -0.13
SLIRP-204ENST00000555890 RB1CC1Q8TDY2 1594 aa14.23□□□□□ -0.13
SLIRP-204ENST00000555890 CC2D2AQ9P2K1 1620 aa14.12□□□□□ -0.15
SLIRP-204ENST00000555890 ERCC6Q03468 1493 aa13.84□□□□□ -0.19
SLIRP-204ENST00000555890 TRHP20396 242 aaPredicted RBP13.82□□□□□ -0.2
SLIRP-204ENST00000555890 BICRAQ9NZM4 1560 aa13.82□□□□□ -0.2
SLIRP-204ENST00000555890 NACADO15069 1562 aa13.71□□□□□ -0.22
SLIRP-204ENST00000555890 SOCS7O14512 581 aa13.68□□□□□ -0.22
SLIRP-204ENST00000555890 CACNB1Q02641 598 aaPredicted RBP13.67□□□□□ -0.22
SLIRP-204ENST00000555890 EIF4G1Q04637 1599 aaKnown RBP13.66□□□□□ -0.22
SLIRP-204ENST00000555890 UNC13AQ9UPW8 1703 aa13.64□□□□□ -0.23
SLIRP-204ENST00000555890 KCNA4P22459 653 aa13.59□□□□□ -0.23
SLIRP-204ENST00000555890 DMRT2Q9Y5R5 561 aa13.59□□□□□ -0.23
SLIRP-204ENST00000555890 LMTK3Q96Q04 1460 aa13.59□□□□□ -0.23
SLIRP-204ENST00000555890 EHMT2Q96KQ7 1210 aa13.58□□□□□ -0.24
SLIRP-204ENST00000555890 OSCARQ8IYS5 282 aa13.57□□□□□ -0.24
SLIRP-204ENST00000555890 SHROOM4Q9ULL8 1493 aa13.56□□□□□ -0.24
SLIRP-204ENST00000555890 MAPK8IP2Q13387 824 aaPredicted RBP13.47□□□□□ -0.25
SLIRP-204ENST00000555890 DCAF8L2P0C7V8 631 aa13.43□□□□□ -0.26
SLIRP-204ENST00000555890 FBXO41Q8TF61 875 aa13.42□□□□□ -0.26
SLIRP-204ENST00000555890 SCAF1Q9H7N4 1312 aaKnown RBP13.41□□□□□ -0.26
SLIRP-204ENST00000555890 ILDR2Q71H61 639 aa13.37□□□□□ -0.27
SLIRP-204ENST00000555890 RIMBP3CA6NJZ7 1639 aa13.36□□□□□ -0.27
SLIRP-204ENST00000555890 RIMBP3BA6NNM3 1639 aa13.36□□□□□ -0.27
SLIRP-204ENST00000555890 RIMBP3Q9UFD9 1639 aa13.36□□□□□ -0.27
SLIRP-204ENST00000555890 CYB5RLQ6IPT4 315 aa13.35□□□□□ -0.27
SLIRP-204ENST00000555890 MYO15BQ96JP2 1530 aa13.29□□□□□ -0.28
SLIRP-204ENST00000555890 BAZ1AQ9NRL2 1556 aaPredicted RBP13.22□□□□□ -0.29
SLIRP-204ENST00000555890 ARHGEF11O15085 1522 aa13.19□□□□□ -0.3
SLIRP-204ENST00000555890 THOC2Q8NI27 1593 aaKnown RBP13.18□□□□□ -0.3
SLIRP-204ENST00000555890 DISP3Q9P2K9 1392 aa13.15□□□□□ -0.3
SLIRP-204ENST00000555890 DCAF8L1A6NGE4 600 aa13.12□□□□□ -0.31
SLIRP-204ENST00000555890 SLC4A1APQ9BWU0 796 aaKnown RBP13.11□□□□□ -0.31
SLIRP-204ENST00000555890 CSRNP3Q8WYN3 585 aa13.08□□□□□ -0.32
SLIRP-204ENST00000555890 KDM4FA0A1W2PPD8 638 aa13.07□□□□□ -0.32
SLIRP-204ENST00000555890 ERCC6L2Q5T890 1561 aa13.07□□□□□ -0.32
SLIRP-204ENST00000555890 PPP4R3CPQ6ZMV5 832 aa13.06□□□□□ -0.32
SLIRP-204ENST00000555890 RNF39Q9H2S5 420 aa13.06□□□□□ -0.32
SLIRP-204ENST00000555890 NESP48681 1621 aa13.04□□□□□ -0.32
SLIRP-204ENST00000555890 NCBP3Q53F19 620 aaKnown RBP12.98□□□□□ -0.33
SLIRP-204ENST00000555890 SCRIBQ14160 1630 aa12.96□□□□□ -0.33
SLIRP-204ENST00000555890 ARAP1Q96P48 1450 aa12.95□□□□□ -0.34
SLIRP-204ENST00000555890 SMARCA2P51531 1590 aa12.94□□□□□ -0.34
SLIRP-204ENST00000555890 DCAF1Q9Y4B6 1507 aa12.93□□□□□ -0.34
SLIRP-204ENST00000555890 C1QBPQ07021 282 aaKnown RBP12.9□□□□□ -0.34
SLIRP-204ENST00000555890 ZCCHC6Q5VYS8 1495 aaKnown RBP12.88□□□□□ -0.35
SLIRP-204ENST00000555890 HOXD11P31277 338 aaPredicted RBP12.82□□□□□ -0.36
SLIRP-204ENST00000555890 HECW2Q9P2P5 1572 aa12.81□□□□□ -0.36
SLIRP-204ENST00000555890 PDS5BQ9NTI5 1447 aa12.78□□□□□ -0.36
SLIRP-204ENST00000555890 SYNJ2O15056 1496 aa12.75□□□□□ -0.37
SLIRP-204ENST00000555890 NCAPD3P42695 1498 aa12.75□□□□□ -0.37
SLIRP-204ENST00000555890 NPM3O75607 178 aaKnown RBP12.74□□□□□ -0.37
SLIRP-204ENST00000555890 MRC2Q9UBG0 1479 aa12.69□□□□□ -0.38
SLIRP-204ENST00000555890 WDR62O43379 1518 aa12.67□□□□□ -0.38
SLIRP-204ENST00000555890 LAMC3Q9Y6N6 1575 aa12.66□□□□□ -0.38
SLIRP-204ENST00000555890 KIF21AQ7Z4S6 1674 aa12.66□□□□□ -0.38
SLIRP-204ENST00000555890 RSF1Q96T23 1441 aaPredicted RBP12.63□□□□□ -0.39
SLIRP-204ENST00000555890 SPATA31D1Q6ZQQ2 1576 aa12.63□□□□□ -0.39
SLIRP-204ENST00000555890 RNF216Q9NWF9 866 aaPredicted RBP12.58□□□□□ -0.4
SLIRP-204ENST00000555890 POTEHQ6S545 545 aa12.55□□□□□ -0.4
SLIRP-204ENST00000555890 CNKSR2Q8WXI2 1034 aa12.54□□□□□ -0.4
SLIRP-204ENST00000555890 ATAD2BQ9ULI0 1458 aa12.53□□□□□ -0.4
SLIRP-204ENST00000555890 ZBTB22O15209 634 aa12.52□□□□□ -0.41
SLIRP-204ENST00000555890 ADGRL1O94910 1474 aa12.46□□□□□ -0.42
SLIRP-204ENST00000555890 HMGXB3Q12766 1538 aa12.45□□□□□ -0.42
SLIRP-204ENST00000555890 CERKQ8TCT0 537 aa12.39□□□□□ -0.43
SLIRP-204ENST00000555890 SMARCA4P51532 1647 aa12.33□□□□□ -0.43
SLIRP-204ENST00000555890 FBLN2P98095 1184 aa12.33□□□□□ -0.44
SLIRP-204ENST00000555890 FOXD4L1Q9NU39 408 aa12.32□□□□□ -0.44
SLIRP-204ENST00000555890 CADPSQ9ULU8 1353 aa12.3□□□□□ -0.44
SLIRP-204ENST00000555890 BAZ1BQ9UIG0 1483 aaKnown RBP12.29□□□□□ -0.44
SLIRP-204ENST00000555890 GRWD1Q9BQ67 446 aaKnown RBP eCLIP12.29□□□□□ -0.444e-8■■■■□ 19.3
SLIRP-204ENST00000555890 CEP164Q9UPV0 1460 aa12.27□□□□□ -0.44
SLIRP-204ENST00000555890 KDM6BO15054 1643 aa12.27□□□□□ -0.44
SLIRP-204ENST00000555890 PEG3Q9GZU2 1588 aa12.26□□□□□ -0.45
SLIRP-204ENST00000555890 FAM69CQ0P6D2 419 aa12.24□□□□□ -0.45
SLIRP-204ENST00000555890 ZNF608Q9ULD9 1512 aaPredicted RBP12.24□□□□□ -0.45
SLIRP-204ENST00000555890 GAPVD1Q14C86 1478 aa12.23□□□□□ -0.45
SLIRP-204ENST00000555890 KIF13AQ9H1H9 1805 aa12.17□□□□□ -0.46
SLIRP-204ENST00000555890 SLC24A1O60721 1099 aa12.17□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms