RNA–Protein interactions for RNA: ENST00000238688.9

SLIRP-201, Transcript of SRA stem-loop interacting RNA binding protein, humanhuman

APPRIS P3 TSL 2 BASIC

Gene SLIRP, Length 394 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SLIRP-201ENST00000238688 NISCHQ9Y2I1 1504 aa31.13■■■□□ 2.57
SLIRP-201ENST00000238688 CCDC180Q9P1Z9 1646 aa27.85■■■□□ 2.05
SLIRP-201ENST00000238688 ABCC9O60706 1549 aa27.6■■■□□ 2.01
SLIRP-201ENST00000238688 RB1CC1Q8TDY2 1594 aa26.35■■□□□ 1.81
SLIRP-201ENST00000238688 NACADO15069 1562 aa26.24■■□□□ 1.79
SLIRP-201ENST00000238688 DCAF8L2P0C7V8 631 aa26.05■■□□□ 1.76
SLIRP-201ENST00000238688 MYO15BQ96JP2 1530 aa25.98■■□□□ 1.75
SLIRP-201ENST00000238688 UNC13AQ9UPW8 1703 aa25.91■■□□□ 1.74
SLIRP-201ENST00000238688 ZCCHC6Q5VYS8 1495 aaKnown RBP25.85■■□□□ 1.73
SLIRP-201ENST00000238688 DNAJC5BQ9UF47 199 aa25.8■■□□□ 1.72
SLIRP-201ENST00000238688 PABPN1Q86U42 306 aaKnown RBP eCLIP25.73■■□□□ 1.71
SLIRP-201ENST00000238688 DCAF1Q9Y4B6 1507 aa25.73■■□□□ 1.71
SLIRP-201ENST00000238688 BICRAQ9NZM4 1560 aa25.69■■□□□ 1.7
SLIRP-201ENST00000238688 SCRIBQ14160 1630 aa25.36■■□□□ 1.65
SLIRP-201ENST00000238688 SHROOM4Q9ULL8 1493 aa25.25■■□□□ 1.63
SLIRP-201ENST00000238688 CC2D2AQ9P2K1 1620 aa24.98■■□□□ 1.59
SLIRP-201ENST00000238688 EIF4G1Q04637 1599 aaKnown RBP24.97■■□□□ 1.59
SLIRP-201ENST00000238688 CECR2Q9BXF3 1484 aa24.83■■□□□ 1.57
SLIRP-201ENST00000238688 NCAPD3P42695 1498 aa24.25■■□□□ 1.47
SLIRP-201ENST00000238688 SMARCA4P51532 1647 aa24.24■■□□□ 1.47
SLIRP-201ENST00000238688 ATAD2BQ9ULI0 1458 aa24.2■■□□□ 1.47
SLIRP-201ENST00000238688 SMARCA2P51531 1590 aa24.11■■□□□ 1.45
SLIRP-201ENST00000238688 BAZ1AQ9NRL2 1556 aaPredicted RBP24.11■■□□□ 1.45
SLIRP-201ENST00000238688 HMGXB3Q12766 1538 aa24.07■■□□□ 1.44
SLIRP-201ENST00000238688 PEG3Q9GZU2 1588 aa24.03■■□□□ 1.44
SLIRP-201ENST00000238688 MROH2BQ7Z745 1585 aa24.01■■□□□ 1.43
SLIRP-201ENST00000238688 BAZ1BQ9UIG0 1483 aaKnown RBP23.93■■□□□ 1.42
SLIRP-201ENST00000238688 NESP48681 1621 aa23.82■■□□□ 1.4
SLIRP-201ENST00000238688 WIZO95785 1651 aa23.74■■□□□ 1.39
SLIRP-201ENST00000238688 ERCC6Q03468 1493 aa23.74■■□□□ 1.39
SLIRP-201ENST00000238688 CUX2O14529 1486 aa23.68■■□□□ 1.38
SLIRP-201ENST00000238688 LAMC3Q9Y6N6 1575 aa23.65■■□□□ 1.38
SLIRP-201ENST00000238688 RSF1Q96T23 1441 aaPredicted RBP23.58■■□□□ 1.36
SLIRP-201ENST00000238688 THOC2Q8NI27 1593 aaKnown RBP23.54■■□□□ 1.36
SLIRP-201ENST00000238688 KIF21AQ7Z4S6 1674 aa23.54■■□□□ 1.36
SLIRP-201ENST00000238688 CADPSQ9ULU8 1353 aa23.49■■□□□ 1.35
SLIRP-201ENST00000238688 DNAJC5Q9H3Z4 198 aa23.46■■□□□ 1.35
SLIRP-201ENST00000238688 PDS5BQ9NTI5 1447 aa23.45■■□□□ 1.34
SLIRP-201ENST00000238688 TOP2AP11388 1531 aaKnown RBP23.41■■□□□ 1.34
SLIRP-201ENST00000238688 CFTRP13569 1480 aa23.29■■□□□ 1.32
SLIRP-201ENST00000238688 MRC2Q9UBG0 1479 aa23.27■■□□□ 1.32
SLIRP-201ENST00000238688 WDR62O43379 1518 aa23.24■■□□□ 1.31
SLIRP-201ENST00000238688 FANCD2Q9BXW9 1451 aa23.22■■□□□ 1.31
SLIRP-201ENST00000238688 CEP164Q9UPV0 1460 aa23.2■■□□□ 1.3
SLIRP-201ENST00000238688 CCDC88BA6NC98 1476 aa23.16■■□□□ 1.3
SLIRP-201ENST00000238688 PRDM2Q13029 1718 aa23.13■■□□□ 1.29
SLIRP-201ENST00000238688 URB2Q14146 1524 aaKnown RBP23.07■■□□□ 1.28
SLIRP-201ENST00000238688 SUPT5HO00267 1087 aaKnown RBP23.06■■□□□ 1.28
SLIRP-201ENST00000238688 TOPBP1Q92547 1522 aa22.83■■□□□ 1.25
SLIRP-201ENST00000238688 DNMBPQ6XZF7 1577 aa22.76■■□□□ 1.23
SLIRP-201ENST00000238688 IFT140Q96RY7 1462 aa22.74■■□□□ 1.23
SLIRP-201ENST00000238688 ZNF608Q9ULD9 1512 aaPredicted RBP22.74■■□□□ 1.23
SLIRP-201ENST00000238688 ABCC8Q09428 1581 aa22.74■■□□□ 1.23
SLIRP-201ENST00000238688 TARBP1Q13395 1621 aaKnown RBP22.65■■□□□ 1.22
SLIRP-201ENST00000238688 POLA1P09884 1462 aaPredicted RBP22.61■■□□□ 1.21
SLIRP-201ENST00000238688 EIF4G3O43432 1585 aaKnown RBP22.61■■□□□ 1.21
SLIRP-201ENST00000238688 OSCARQ8IYS5 282 aa22.61■■□□□ 1.21
SLIRP-201ENST00000238688 CUX1P39880 1505 aa22.54■■□□□ 1.2
SLIRP-201ENST00000238688 AQRO60306 1485 aaKnown RBP eCLIP22.54■■□□□ 1.22e-9■□□□□ 10.8
SLIRP-201ENST00000238688 RAD54L2Q9Y4B4 1467 aa22.54■■□□□ 1.2
SLIRP-201ENST00000238688 FGD5Q6ZNL6 1462 aa22.49■■□□□ 1.19
SLIRP-201ENST00000238688 SOGA1O94964 1423 aa22.48■■□□□ 1.19
SLIRP-201ENST00000238688 CHD1O14646 1710 aa22.44■■□□□ 1.18
SLIRP-201ENST00000238688 TRIM41Q8WV44 630 aa22.43■■□□□ 1.18
SLIRP-201ENST00000238688 TDRD9Q8NDG6 1382 aaKnown RBP22.42■■□□□ 1.18
SLIRP-201ENST00000238688 WDR97A6NE52 1622 aa22.39■■□□□ 1.17
SLIRP-201ENST00000238688 RIMBP3CA6NJZ7 1639 aa22.37■■□□□ 1.17
SLIRP-201ENST00000238688 RIMBP3BA6NNM3 1639 aa22.37■■□□□ 1.17
SLIRP-201ENST00000238688 RIMBP3Q9UFD9 1639 aa22.37■■□□□ 1.17
SLIRP-201ENST00000238688 ARHGEF11O15085 1522 aa22.3■■□□□ 1.16
SLIRP-201ENST00000238688 SNAPC4Q5SXM2 1469 aa22.29■■□□□ 1.16
SLIRP-201ENST00000238688 ABCA10Q8WWZ4 1543 aa22.26■■□□□ 1.15
SLIRP-201ENST00000238688 FBLN2P98095 1184 aa22.25■■□□□ 1.15
SLIRP-201ENST00000238688 GRIN2BQ13224 1484 aa22.25■■□□□ 1.15
SLIRP-201ENST00000238688 BIVM-ERCC5R4GMW8 1640 aa22.24■■□□□ 1.15
SLIRP-201ENST00000238688 PBRM1Q86U86 1689 aa22.24■■□□□ 1.15
SLIRP-201ENST00000238688 MAGI1Q96QZ7 1491 aaPredicted RBP22.23■■□□□ 1.15
SLIRP-201ENST00000238688 CHIC1Q5VXU3 224 aa22.23■■□□□ 1.15
SLIRP-201ENST00000238688 ABCA5Q8WWZ7 1642 aa22.23■■□□□ 1.15
SLIRP-201ENST00000238688 SYNJ1O43426 1573 aa22.22■■□□□ 1.15
SLIRP-201ENST00000238688 TOP2BQ02880 1626 aa22.22■■□□□ 1.15
SLIRP-201ENST00000238688 GAPVD1Q14C86 1478 aa22.22■■□□□ 1.15
SLIRP-201ENST00000238688 WRNQ14191 1432 aaPredicted RBP eCLIP22.19■■□□□ 1.14
SLIRP-201ENST00000238688 CLASP1Q7Z460 1538 aa22.17■■□□□ 1.14
SLIRP-201ENST00000238688 SYNJ2O15056 1496 aa22.16■■□□□ 1.14
SLIRP-201ENST00000238688 CHMP7Q8WUX9 453 aaPredicted RBP22.13■■□□□ 1.13
SLIRP-201ENST00000238688 ARAP1Q96P48 1450 aa22.11■■□□□ 1.13
SLIRP-201ENST00000238688 CYB5RLQ6IPT4 315 aa22.07■■□□□ 1.12
SLIRP-201ENST00000238688 ADAMTS12P58397 1594 aa22.03■■□□□ 1.12
SLIRP-201ENST00000238688 GRIN2AQ12879 1464 aa21.98■■□□□ 1.11
SLIRP-201ENST00000238688 ERICH3Q5RHP9 1530 aa21.96■■□□□ 1.11
SLIRP-201ENST00000238688 CEP170Q5SW79 1584 aa21.94■■□□□ 1.1
SLIRP-201ENST00000238688 FHAD1B1AJZ9 1412 aa21.93■■□□□ 1.1
SLIRP-201ENST00000238688 NUP160Q12769 1436 aa21.93■■□□□ 1.1
SLIRP-201ENST00000238688 ERCC6L2Q5T890 1561 aa21.87■■□□□ 1.09
SLIRP-201ENST00000238688 SHROOM2Q13796 1616 aa21.84■■□□□ 1.09
SLIRP-201ENST00000238688 IGF1RP08069 1367 aa21.75■■□□□ 1.07
SLIRP-201ENST00000238688 KIF27Q86VH2 1401 aa21.72■■□□□ 1.07
SLIRP-201ENST00000238688 RUSC2Q8N2Y8 1516 aa21.71■■□□□ 1.07
SLIRP-201ENST00000238688 TRHP20396 242 aaPredicted RBP21.7■■□□□ 1.06
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms