RNA–Protein interactions for RNA: ENST00000556310.1

SLIRP-205, Transcript of SRA stem-loop interacting RNA binding protein, humanhuman

TSL 2

Gene SLIRP, Length 626 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SLIRP-205ENST00000556310 NISCHQ9Y2I1 1504 aa28.3■■■□□ 2.12
SLIRP-205ENST00000556310 AEBP2Q6ZN18 517 aaPredicted RBP27.35■■□□□ 1.97
SLIRP-205ENST00000556310 CHIC1Q5VXU3 224 aa26.95■■□□□ 1.9
SLIRP-205ENST00000556310 CCDC180Q9P1Z9 1646 aa25.29■■□□□ 1.64
SLIRP-205ENST00000556310 ABCC9O60706 1549 aa24.7■■□□□ 1.54
SLIRP-205ENST00000556310 RB1CC1Q8TDY2 1594 aa23.79■■□□□ 1.4
SLIRP-205ENST00000556310 NACADO15069 1562 aa23.74■■□□□ 1.39
SLIRP-205ENST00000556310 PHF23Q9BUL5 403 aaPredicted RBP23.72■■□□□ 1.39
SLIRP-205ENST00000556310 ZCCHC6Q5VYS8 1495 aaKnown RBP23.59■■□□□ 1.37
SLIRP-205ENST00000556310 MYO15BQ96JP2 1530 aa23.59■■□□□ 1.37
SLIRP-205ENST00000556310 DCAF8L2P0C7V8 631 aa23.52■■□□□ 1.36
SLIRP-205ENST00000556310 DCAF1Q9Y4B6 1507 aa23.46■■□□□ 1.35
SLIRP-205ENST00000556310 UNC13AQ9UPW8 1703 aa23.3■■□□□ 1.32
SLIRP-205ENST00000556310 SENP3Q9H4L4 574 aaPredicted RBP23.18■■□□□ 1.3
SLIRP-205ENST00000556310 BICRAQ9NZM4 1560 aa23.06■■□□□ 1.28
SLIRP-205ENST00000556310 SCRIBQ14160 1630 aa23■■□□□ 1.27
SLIRP-205ENST00000556310 PABPN1Q86U42 306 aaKnown RBP eCLIP22.99■■□□□ 1.27
SLIRP-205ENST00000556310 SHROOM4Q9ULL8 1493 aa22.87■■□□□ 1.25
SLIRP-205ENST00000556310 DNAJC5BQ9UF47 199 aa22.66■■□□□ 1.22
SLIRP-205ENST00000556310 EIF4G1Q04637 1599 aaKnown RBP22.46■■□□□ 1.19
SLIRP-205ENST00000556310 CC2D2AQ9P2K1 1620 aa22.39■■□□□ 1.17
SLIRP-205ENST00000556310 CECR2Q9BXF3 1484 aa22.22■■□□□ 1.15
SLIRP-205ENST00000556310 SMARCA4P51532 1647 aa22.02■■□□□ 1.11
SLIRP-205ENST00000556310 PLPPR3Q6T4P5 718 aa22.01■■□□□ 1.11
SLIRP-205ENST00000556310 BAZ1AQ9NRL2 1556 aaPredicted RBP21.97■■□□□ 1.11
SLIRP-205ENST00000556310 SMARCA2P51531 1590 aa21.88■■□□□ 1.09
SLIRP-205ENST00000556310 ATAD2BQ9ULI0 1458 aa21.87■■□□□ 1.09
SLIRP-205ENST00000556310 NCAPD3P42695 1498 aa21.86■■□□□ 1.09
SLIRP-205ENST00000556310 PEG3Q9GZU2 1588 aa21.82■■□□□ 1.08
SLIRP-205ENST00000556310 HMGXB3Q12766 1538 aa21.81■■□□□ 1.08
SLIRP-205ENST00000556310 MROH2BQ7Z745 1585 aa21.79■■□□□ 1.08
SLIRP-205ENST00000556310 BAZ1BQ9UIG0 1483 aaKnown RBP21.7■■□□□ 1.06
SLIRP-205ENST00000556310 WIZO95785 1651 aa21.58■■□□□ 1.05
SLIRP-205ENST00000556310 RSF1Q96T23 1441 aaPredicted RBP21.49■■□□□ 1.03
SLIRP-205ENST00000556310 FOXD1Q16676 465 aa21.48■■□□□ 1.03
SLIRP-205ENST00000556310 TOP2AP11388 1531 aaKnown RBP21.36■■□□□ 1.01
SLIRP-205ENST00000556310 LAMC3Q9Y6N6 1575 aa21.36■■□□□ 1.01
SLIRP-205ENST00000556310 NESP48681 1621 aa21.35■■□□□ 1.01
SLIRP-205ENST00000556310 ERCC6Q03468 1493 aa21.32■■□□□ 1
SLIRP-205ENST00000556310 CADPSQ9ULU8 1353 aa21.2■□□□□ 0.98
SLIRP-205ENST00000556310 KIF21AQ7Z4S6 1674 aa21.18■□□□□ 0.98
SLIRP-205ENST00000556310 PDS5BQ9NTI5 1447 aa21.16■□□□□ 0.98
SLIRP-205ENST00000556310 CUX2O14529 1486 aa21.15■□□□□ 0.98
SLIRP-205ENST00000556310 THOC2Q8NI27 1593 aaKnown RBP21.14■□□□□ 0.97
SLIRP-205ENST00000556310 CFTRP13569 1480 aa21.09■□□□□ 0.97
SLIRP-205ENST00000556310 CCDC88BA6NC98 1476 aa21.05■□□□□ 0.96
SLIRP-205ENST00000556310 PRDM2Q13029 1718 aa21.04■□□□□ 0.96
SLIRP-205ENST00000556310 FANCD2Q9BXW9 1451 aa20.99■□□□□ 0.95
SLIRP-205ENST00000556310 CEP164Q9UPV0 1460 aa20.99■□□□□ 0.95
SLIRP-205ENST00000556310 MRC2Q9UBG0 1479 aa20.97■□□□□ 0.95
SLIRP-205ENST00000556310 WDR62O43379 1518 aa20.94■□□□□ 0.94
SLIRP-205ENST00000556310 ADRA2BP18089 450 aa20.9■□□□□ 0.94
SLIRP-205ENST00000556310 PPP6R1Q9UPN7 881 aa20.86■□□□□ 0.93
SLIRP-205ENST00000556310 SUPT5HO00267 1087 aaKnown RBP20.79■□□□□ 0.92
SLIRP-205ENST00000556310 URB2Q14146 1524 aaKnown RBP20.78■□□□□ 0.92
SLIRP-205ENST00000556310 DNMBPQ6XZF7 1577 aa20.65■□□□□ 0.9
SLIRP-205ENST00000556310 TOPBP1Q92547 1522 aa20.65■□□□□ 0.9
SLIRP-205ENST00000556310 ABCC8Q09428 1581 aa20.64■□□□□ 0.9
SLIRP-205ENST00000556310 IFT140Q96RY7 1462 aa20.54■□□□□ 0.88
SLIRP-205ENST00000556310 DNAJC5Q9H3Z4 198 aa20.5■□□□□ 0.87
SLIRP-205ENST00000556310 POLA1P09884 1462 aaPredicted RBP20.47■□□□□ 0.87
SLIRP-205ENST00000556310 CUX1P39880 1505 aa20.47■□□□□ 0.87
SLIRP-205ENST00000556310 TARBP1Q13395 1621 aaKnown RBP20.46■□□□□ 0.87
SLIRP-205ENST00000556310 ZNF608Q9ULD9 1512 aaPredicted RBP20.43■□□□□ 0.86
SLIRP-205ENST00000556310 EIF4G3O43432 1585 aaKnown RBP20.42■□□□□ 0.86
SLIRP-205ENST00000556310 FGD5Q6ZNL6 1462 aa20.4■□□□□ 0.86
SLIRP-205ENST00000556310 PIAS4Q8N2W9 510 aaPredicted RBP20.36■□□□□ 0.85
SLIRP-205ENST00000556310 WDR97A6NE52 1622 aa20.35■□□□□ 0.85
SLIRP-205ENST00000556310 RAD54L2Q9Y4B4 1467 aa20.34■□□□□ 0.85
SLIRP-205ENST00000556310 SOGA1O94964 1423 aa20.34■□□□□ 0.85
SLIRP-205ENST00000556310 BIVM-ERCC5R4GMW8 1640 aa20.32■□□□□ 0.84
SLIRP-205ENST00000556310 TOP2BQ02880 1626 aa20.3■□□□□ 0.84
SLIRP-205ENST00000556310 WRNQ14191 1432 aaPredicted RBP eCLIP20.28■□□□□ 0.84
SLIRP-205ENST00000556310 AQRO60306 1485 aaKnown RBP eCLIP20.28■□□□□ 0.842e-9■□□□□ 10.8
SLIRP-205ENST00000556310 SYNJ1O43426 1573 aa20.28■□□□□ 0.84
SLIRP-205ENST00000556310 ABCA10Q8WWZ4 1543 aa20.22■□□□□ 0.83
SLIRP-205ENST00000556310 TDRD9Q8NDG6 1382 aaKnown RBP20.21■□□□□ 0.83
SLIRP-205ENST00000556310 ABCA5Q8WWZ7 1642 aa20.19■□□□□ 0.82
SLIRP-205ENST00000556310 CHD1O14646 1710 aa20.19■□□□□ 0.82
SLIRP-205ENST00000556310 PBRM1Q86U86 1689 aa20.18■□□□□ 0.82
SLIRP-205ENST00000556310 OSCARQ8IYS5 282 aa20.15■□□□□ 0.82
SLIRP-205ENST00000556310 GRIN2BQ13224 1484 aa20.15■□□□□ 0.82
SLIRP-205ENST00000556310 SNAPC4Q5SXM2 1469 aa20.14■□□□□ 0.81
SLIRP-205ENST00000556310 GAPVD1Q14C86 1478 aa20.13■□□□□ 0.81
SLIRP-205ENST00000556310 MAGI1Q96QZ7 1491 aaPredicted RBP20.13■□□□□ 0.81
SLIRP-205ENST00000556310 SYNJ2O15056 1496 aa20.04■□□□□ 0.8
SLIRP-205ENST00000556310 ADAMTS12P58397 1594 aa20■□□□□ 0.79
SLIRP-205ENST00000556310 FBLN2P98095 1184 aa19.99■□□□□ 0.79
SLIRP-205ENST00000556310 ERICH3Q5RHP9 1530 aa19.98■□□□□ 0.79
SLIRP-205ENST00000556310 CHMP7Q8WUX9 453 aaPredicted RBP19.95■□□□□ 0.78
SLIRP-205ENST00000556310 CLASP1Q7Z460 1538 aa19.95■□□□□ 0.78
SLIRP-205ENST00000556310 RIMBP3CA6NJZ7 1639 aa19.94■□□□□ 0.78
SLIRP-205ENST00000556310 RIMBP3BA6NNM3 1639 aa19.94■□□□□ 0.78
SLIRP-205ENST00000556310 RIMBP3Q9UFD9 1639 aa19.94■□□□□ 0.78
SLIRP-205ENST00000556310 ARHGEF11O15085 1522 aa19.92■□□□□ 0.78
SLIRP-205ENST00000556310 FHAD1B1AJZ9 1412 aa19.9■□□□□ 0.78
SLIRP-205ENST00000556310 GRIN2AQ12879 1464 aa19.9■□□□□ 0.78
SLIRP-205ENST00000556310 KIF27Q86VH2 1401 aa19.86■□□□□ 0.77
SLIRP-205ENST00000556310 CUL7Q14999 1698 aa19.83■□□□□ 0.76
SLIRP-205ENST00000556310 CEP170Q5SW79 1584 aa19.83■□□□□ 0.76
Retrieved 100 of 20,778 RNA–protein pairs in 7.6 ms